ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC130187.4| Atelerix albiventris clone LB4-344F17, complete s... 42 1.4
2gb|AC022306.6| Homo sapiens chromosome 15 clone RP11-295H24 map ... 42 1.4
3gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold 42 1.4
4gb|AC130784.3| Atelerix albiventris clone LB4-112D1, complete se... 42 1.4
5emb|AL607074.13| Mouse DNA sequence from clone RP23-174M9 on chr... 42 1.4
6gb|AC125670.4| Rattus norvegicus BAC CH230-113E22 (Children's H... 40 5.7
7gb|AC113301.7| Mus musculus chromosome 8, clone RP23-430G7, comp... 40 5.7
8emb|BX572101.1| Prochlorococcus marinus MIT9313 complete genome;... 40 5.7
9gb|AC018515.7| Homo sapiens chromosome , clone RP11-250G15, comp... 40 5.7
10gb|AC149572.14| Medicago truncatula clone mth2-116e22, complete ... 40 5.7
11gb|AC093259.2| Homo sapiens chromosome 5 clone RP11-229C3, compl... 40 5.7
12dbj|AK053081.1| Mus musculus 15 days embryo head cDNA, RIKEN ful... 40 5.7
13gb|AC008339.2|AC008339 Drosophila melanogaster, chromosome 2R, r... 40 5.7
14gb|AC009255.4|AC009255 Drosophila melanogaster, chromosome 2R, r... 40 5.7
15gb|AC022309.16|AC022309 Homo sapiens chromosome 15 clone RP11-67... 40 5.7
16gb|AC007121.1|AC007121 Drosophila melanogaster, chromosome 2R, r... 40 5.7
17gb|AE003784.5| Drosophila melanogaster chromosome 2R, section 5 ... 40 5.7
18emb|CT030243.8| M.truncatula DNA sequence from clone MTH2-72K5 o... 40 5.7
19emb|AL928547.12| Mouse DNA sequence from clone RP23-226B16 on ch... 40 5.7
20emb|CT025624.11| Mouse DNA sequence from clone RP24-212N20 on ch... 40 5.7
21gb|AC122435.5| Mus musculus BAC clone RP24-199D4 from 8, complet... 40 5.7
22emb|AL808120.9| Mouse DNA sequence from clone RP23-418E2 on chro... 40 5.7

>gb|AC130187.4| Atelerix albiventris clone LB4-344F17, complete sequence
          Length = 150117

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 76     taaaatgcacaagaaatacat 96
              |||||||||||||||||||||
Sbjct: 101323 taaaatgcacaagaaatacat 101343



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>gb|AC022306.6| Homo sapiens chromosome 15 clone RP11-295H24 map 15q21.1, complete
              sequence
          Length = 176827

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 136    atatatcaaatacctaaaata 156
              |||||||||||||||||||||
Sbjct: 103042 atatatcaaatacctaaaata 103022



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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 76      taaaatgcacaagaaatacat 96
               |||||||||||||||||||||
Sbjct: 1797203 taaaatgcacaagaaatacat 1797223



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>gb|AC130784.3| Atelerix albiventris clone LB4-112D1, complete sequence
          Length = 166122

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 76    taaaatgcacaagaaatacat 96
             |||||||||||||||||||||
Sbjct: 23213 taaaatgcacaagaaatacat 23233



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>emb|AL607074.13| Mouse DNA sequence from clone RP23-174M9 on chromosome 4, complete
              sequence
          Length = 204428

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 235    tgattgtccttcagaggcatt 255
              |||||||||||||||||||||
Sbjct: 166170 tgattgtccttcagaggcatt 166150



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>gb|AC125670.4| Rattus norvegicus  BAC CH230-113E22 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 103836

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 170   atgatctggggttcttgggc 189
             ||||||||||||||||||||
Sbjct: 35578 atgatctggggttcttgggc 35559



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>gb|AC113301.7| Mus musculus chromosome 8, clone RP23-430G7, complete sequence
          Length = 195985

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    caagaaatacatatgattct 104
             ||||||||||||||||||||
Sbjct: 42721 caagaaatacatatgattct 42740



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>emb|BX572101.1| Prochlorococcus marinus MIT9313 complete genome; segment 7/7
          Length = 318136

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 209    ctattcctaatattcaaactgcag 232
              ||||||||| ||||||||||||||
Sbjct: 305332 ctattcctactattcaaactgcag 305355



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>gb|AC018515.7| Homo sapiens chromosome , clone RP11-250G15, complete sequence
          Length = 123722

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   acacaattacagtgaccttg 332
             ||||||||||||||||||||
Sbjct: 98718 acacaattacagtgaccttg 98699



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>gb|AC149572.14| Medicago truncatula clone mth2-116e22, complete sequence
          Length = 120017

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 132    taatatatatcaaataccta 151
              ||||||||||||||||||||
Sbjct: 113963 taatatatatcaaataccta 113982



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>gb|AC093259.2| Homo sapiens chromosome 5 clone RP11-229C3, complete sequence
          Length = 183380

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 74     cataaaatgcacaagaaatacata 97
              ||||||||||| ||||||||||||
Sbjct: 151460 cataaaatgcaaaagaaatacata 151483



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>dbj|AK053081.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched
            library, clone:D930046F11 product:unclassifiable, full
            insert sequence
          Length = 4509

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 85   caagaaatacatatgattct 104
            ||||||||||||||||||||
Sbjct: 3075 caagaaatacatatgattct 3056



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>gb|AC008339.2|AC008339 Drosophila melanogaster, chromosome 2R, region 42A-42A, BAC clone
             BACR13P06, complete sequence
          Length = 180699

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    taaaatgcacaagaaatacatatg 99
             |||||||||||||| |||||||||
Sbjct: 54125 taaaatgcacaagacatacatatg 54148



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>gb|AC009255.4|AC009255 Drosophila melanogaster, chromosome 2R, region 42A-42A, BAC clone
             BACR39E09, complete sequence
          Length = 163990

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 76    taaaatgcacaagaaatacatatg 99
             |||||||||||||| |||||||||
Sbjct: 97950 taaaatgcacaagacatacatatg 97973



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>gb|AC022309.16|AC022309 Homo sapiens chromosome 15 clone RP11-67O17, complete sequence
          Length = 172482

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 313    acacaattacagtgaccttg 332
              ||||||||||||||||||||
Sbjct: 155379 acacaattacagtgaccttg 155360



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>gb|AC007121.1|AC007121 Drosophila melanogaster, chromosome 2R, region 42A8-42A16, P1 clones
             DS06954 and DS05325, complete sequence
          Length = 135182

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 76    taaaatgcacaagaaatacatatg 99
             |||||||||||||| |||||||||
Sbjct: 90817 taaaatgcacaagacatacatatg 90794



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>gb|AE003784.5| Drosophila melanogaster chromosome 2R, section 5 of 73 of the complete
              sequence
          Length = 305162

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 76     taaaatgcacaagaaatacatatg 99
              |||||||||||||| |||||||||
Sbjct: 116612 taaaatgcacaagacatacatatg 116635



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>emb|CT030243.8| M.truncatula DNA sequence from clone MTH2-72K5 on chromosome 3,
           complete sequence
          Length = 111036

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 132 taatatatatcaaataccta 151
           ||||||||||||||||||||
Sbjct: 732 taatatatatcaaataccta 751



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>emb|AL928547.12| Mouse DNA sequence from clone RP23-226B16 on chromosome 2, complete
             sequence
          Length = 131255

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    tgcaggaggacactgtgtta 66
             ||||||||||||||||||||
Sbjct: 20500 tgcaggaggacactgtgtta 20519



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>emb|CT025624.11| Mouse DNA sequence from clone RP24-212N20 on chromosome 14, complete
              sequence
          Length = 198113

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 319    ttacagtgaccttgcccaag 338
              ||||||||||||||||||||
Sbjct: 102003 ttacagtgaccttgcccaag 102022



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>gb|AC122435.5| Mus musculus BAC clone RP24-199D4 from 8, complete sequence
          Length = 161717

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 85    caagaaatacatatgattct 104
             ||||||||||||||||||||
Sbjct: 40421 caagaaatacatatgattct 40402



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>emb|AL808120.9| Mouse DNA sequence from clone RP23-418E2 on chromosome X, complete
              sequence
          Length = 148328

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 75     ataaaatgcacaagaaatacatat 98
              ||||||||||||||||| ||||||
Sbjct: 107269 ataaaatgcacaagaaacacatat 107292


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,079,803
Number of Sequences: 3902068
Number of extensions: 5079803
Number of successful extensions: 83669
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83624
Number of HSP's gapped (non-prelim): 45
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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