ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39e02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CCPR_YARLI (Q6C0Z6) Cytochrome c peroxidase, mitochondrial precu... 29 3.8
2MIPO1_HUMAN (Q8TD10) Mirror-image polydactyly gene 1 protein 28 8.5

>CCPR_YARLI (Q6C0Z6) Cytochrome c peroxidase, mitochondrial precursor (EC|
           1.11.1.5) (CCP)
          Length = 340

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
 Frame = -2

Query: 167 GRCMQNNLGFGDPW--SPVYFFND 102
           GRC + N GF  PW  SP  F ND
Sbjct: 227 GRCHKQNSGFEGPWTFSPTMFTND 250



to top

>MIPO1_HUMAN (Q8TD10) Mirror-image polydactyly gene 1 protein|
          Length = 442

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = +2

Query: 53  ESLWATVNKNYNVMDHRH*KNTLETMGPQNLSCSACICQTSSKKNR 190
           ES++ T  K YNVM+HRH     E M P         CQ +S  ++
Sbjct: 74  ESVYCTTEK-YNVMEHRHNDMHYECMTP---------CQVTSDSDK 109


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,393,565
Number of Sequences: 219361
Number of extensions: 628739
Number of successful extensions: 1360
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 80,573,946
effective HSP length: 46
effective length of database: 70,483,340
effective search space used: 1691600160
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top