ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl39e01 |
|---|---|
| Clone Library Name | barley_pub |
>CRI4_MAIZE (O24585) Putative receptor protein kinase CRINKLY4 precursor (EC| 2.7.11.1) Length = 901 Score = 72.0 bits (175), Expect = 3e-13 Identities = 34/36 (94%), Positives = 34/36 (94%) Frame = -1 Query: 374 TDGRNVGSSIGDGLRSLEEEIGPASPQGNLYLQHNF 267 TDGRNVGSSIGDGLRSLEEEI PASPQ NLYLQHNF Sbjct: 866 TDGRNVGSSIGDGLRSLEEEIAPASPQENLYLQHNF 901
>SYFB_BORPE (Q7VVR5) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 805 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = +2 Query: 266 RSCAASTGSPVETPAQSLPPVTADHLL 346 R AA TG+P+ PA PVT DH L Sbjct: 177 REVAALTGTPLTAPAAEPVPVTIDHRL 203
>SYFB_BORPA (Q7W7C6) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 805 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = +2 Query: 266 RSCAASTGSPVETPAQSLPPVTADHLL 346 R AA TG+P+ PA PVT DH L Sbjct: 177 REVAALTGTPLTAPAAEPVPVTIDHRL 203
>SYFB_BORBR (Q7WKR4) Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 805 Score = 29.6 bits (65), Expect = 1.8 Identities = 14/27 (51%), Positives = 16/27 (59%) Frame = +2 Query: 266 RSCAASTGSPVETPAQSLPPVTADHLL 346 R AA TG+P+ PA PVT DH L Sbjct: 177 REVAALTGTPLTAPAAEPVPVTIDHRL 203
>UPPS_SULTO (Q976K2) Undecaprenyl pyrophosphate synthetase (EC 2.5.1.31) (UPP| synthetase) (Di-trans,poly-cis-decaprenylcistransferase) (Undecaprenyl diphosphate synthase) (UDS) Length = 262 Score = 28.9 bits (63), Expect = 3.2 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = -2 Query: 253 RSAENMETVCRF--KFRLCDLLLWPFRREDLAI*STYWKDF*HLEAFLCRLIRS 98 + E+++ V R + R+ + LLW +L TYW DF ++ L R IRS Sbjct: 201 KELEDIDLVIRSSGEIRISNFLLWHIAYSELFFVDTYWPDFRKID--LWRAIRS 252
>HDAC7_MOUSE (Q8C2B3) Histone deacetylase 7a (HD7a)| Length = 938 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = -1 Query: 374 TDGRNVGSSIGDGLRSLEEEIGPASPQGNLYLQHN 270 TDG VG DGL E GP +G++ LQ + Sbjct: 404 TDGGGVGPMANDGLEHRESGRGPPEGRGSISLQQH 438
>SYL_MYCTU (P67510) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 969 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Frame = -3 Query: 324 GGRDWAGVSTGE--PVLAAQLLMKCQDQLKTWKP--SAVLSSDFVT 199 GGRDWA ++ GE V+ L+ D L W P VL+++ VT Sbjct: 211 GGRDWAKLTAGERADVIDEYRLVYRADSLVNWCPGLGTVLANEEVT 256
>SYL_MYCBO (P67511) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 969 Score = 28.5 bits (62), Expect = 4.1 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 4/46 (8%) Frame = -3 Query: 324 GGRDWAGVSTGE--PVLAAQLLMKCQDQLKTWKP--SAVLSSDFVT 199 GGRDWA ++ GE V+ L+ D L W P VL+++ VT Sbjct: 211 GGRDWAKLTAGERADVIDEYRLVYRADSLVNWCPGLGTVLANEEVT 256
>RTEL1_HUMAN (Q9NZ71) Regulator of telomere elongation helicase 1 (EC 3.6.1.-)| (Helicase-like protein NHL) Length = 1400 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%) Frame = -2 Query: 133 HLEAFLCRLIRSSYNCHLYL*VE----WPQLMSPVL*LADTSK 17 HL+ LCR +S +CH Y VE +L SP+L + D K Sbjct: 157 HLQIHLCRKKVASRSCHFYNNVEEKSLEQELASPILDIEDLVK 199
>TBX10_MOUSE (Q810F8) T-box transcription factor TBX10 (T-box protein 10)| Length = 385 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/23 (47%), Positives = 13/23 (56%) Frame = -2 Query: 325 WRKRLGRRLHRGTCTCSTTSDEM 257 W RLG R G+CT ST + M Sbjct: 27 WESRLGTRFPSGSCTMSTEAQAM 49
>PEPA4_RABIT (P28713) Pepsin II-4 precursor (EC 3.4.23.1) (Pepsin A)| Length = 387 Score = 27.7 bits (60), Expect = 7.0 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 7/82 (8%) Frame = +3 Query: 24 VSASYRTGLINCGHSTYKYKWQL*DDRINLQRNASRC*KSFQYV-------LYIARSSLR 182 + +SY TG +N +Y+ WQ+ D +++ C S Q + L S++ Sbjct: 231 IDSSYYTGSLNWVPVSYEGYWQITMDSVSINGETIACADSCQAIVDTGTSLLTGPTSAIS 290 Query: 183 NGQSNRSQSLNLKRQTVSMFSA 248 N QS S NL + V SA Sbjct: 291 NIQSYIGASKNLLGENVISCSA 312
>PEPA2_RABIT (P27821) Pepsin II-2/3 precursor (EC 3.4.23.1) (Pepsin A)| Length = 387 Score = 27.7 bits (60), Expect = 7.0 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 7/82 (8%) Frame = +3 Query: 24 VSASYRTGLINCGHSTYKYKWQL*DDRINLQRNASRC*KSFQYV-------LYIARSSLR 182 + +SY TG +N +Y+ WQ+ D +++ C S Q + L S++ Sbjct: 231 IDSSYYTGSLNWVPVSYEGYWQITMDSVSINGETIACADSCQAIVDTGTSLLTGPTSAIS 290 Query: 183 NGQSNRSQSLNLKRQTVSMFSA 248 N QS S NL + V SA Sbjct: 291 NIQSYIGASKNLLGENVISCSA 312
>DPYL4_HUMAN (O14531) Dihydropyrimidinase-related protein 4 (DRP-4) (Collapsin| response mediator protein 3) (CRMP-3) (UNC33-like phosphoprotein 4) (ULIP4 protein) Length = 572 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = +2 Query: 227 DGFHVFS*SWHFIRSCAASTGSPVETPAQSLPPVTADHLLC 349 DG H +S +W A + V +P + P TADHL C Sbjct: 286 DGSHYWSKNW-------AKAAAFVTSPPVNPDPTTADHLTC 319
>RNZ_SULAC (Q4J9A4) Ribonuclease Z (EC 3.1.26.11) (RNase Z) (tRNase Z) (tRNA 3| endonuclease) Length = 292 Score = 27.7 bits (60), Expect = 7.0 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Frame = +1 Query: 1 ERQLHTYSYLRATE-----QDSSTVAIPLINTSGNYRTTESIYKE 120 ER+ H Y + T+ + + L + SG Y+TTE + KE Sbjct: 226 EREAHDYGHSNCTDAAEIASKADVKRLALYHISGRYQTTEPLLKE 270
>NEDD1_HUMAN (Q8NHV4) Protein NEDD1| Length = 660 Score = 27.3 bits (59), Expect = 9.2 Identities = 13/47 (27%), Positives = 30/47 (63%) Frame = +3 Query: 141 SFQYVLYIARSSLRNGQSNRSQSLNLKRQTVSMFSADLGISSEVVLQ 281 +FQY + +SSL G SN+ ++N +++V++ +A G+ + +++ Sbjct: 298 AFQYSTVLTKSSLNKGCSNKPTTVN--KRSVNVNAASGGVQNSGIVR 342
>KITH_HSVBM (P33802) Thymidine kinase (EC 2.7.1.21)| Length = 686 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = +1 Query: 13 HTYSYLRATEQDSSTVAIPLIN-TSGNYRTTESIYKEMPPDAKNPS 147 +T S LR++ D + + +N TS + E +Y+E+PP A NPS Sbjct: 114 NTASGLRSSCSDFTILGSSGVNPTSHANLSEEEMYEEIPPLASNPS 159
>BIOA_CORGL (P46395) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase| (EC 2.6.1.62) (7,8-diamino-pelargonic acid aminotransferase) (DAPA aminotransferase) Length = 423 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 5/64 (7%) Frame = +2 Query: 5 DNYTLTRICELQNRTHQLWPFHL*IQV-----AIIGRPNQSTKKCLQMLKILPVRTLYS* 169 D +T +C+ +N H LW L Q+ + G Q+ + L+ +++L T+ + Sbjct: 147 DTFTAMSVCDPENGMHSLWKGTLPEQIFAPAPPVRGSSPQAISEYLRSMELLIDETVSAI 206 Query: 170 ILSP 181 I+ P Sbjct: 207 IIEP 210
>PPIH_USTMA (Q4P6X6) Peptidyl-prolyl cis-trans isomerase H (EC 5.2.1.8) (PPIase| H) (Rotamase H) (Fragment) Length = 156 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -2 Query: 292 GTCTCSTTSDEMPRSAENMETVCRFKFR 209 G C SD +PR++EN +C +FR Sbjct: 4 GRLKCELFSDIVPRTSENFRQLCTGEFR 31
>ZN33A_HUMAN (Q06730) Zinc finger protein 33A (Zinc finger protein KOX31) (Zinc| finger and ZAK-associated protein with KRAB domain) (ZZaPK) Length = 810 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/28 (53%), Positives = 17/28 (60%), Gaps = 2/28 (7%) Frame = +2 Query: 299 ETPAQSLPPVTADHLLCCSR--HSSHLW 376 E P+QS P TADHL S+ S HLW Sbjct: 76 EFPSQSFPVWTADHLKERSQENQSKHLW 103
>RL7A_CHICK (P32429) 60S ribosomal protein L7a| Length = 265 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/15 (66%), Positives = 12/15 (80%) Frame = -2 Query: 322 RKRLGRRLHRGTCTC 278 + RLGR +HR TCTC Sbjct: 186 KARLGRLVHRKTCTC 200
>NU153_RAT (P49791) Nuclear pore complex protein Nup153 (Nucleoporin Nup153)| (153 kDa nucleoporin) Length = 1468 Score = 27.3 bits (59), Expect = 9.2 Identities = 10/18 (55%), Positives = 13/18 (72%) Frame = -2 Query: 286 CTCSTTSDEMPRSAENME 233 C+CS +DE+PR EN E Sbjct: 67 CSCSVNADEVPRWPENRE 84 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,766,968 Number of Sequences: 219361 Number of extensions: 1201702 Number of successful extensions: 3458 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3364 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3458 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
