Clone Name | rbastl39d12 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 105 bits (53), Expect = 7e-20 Identities = 97/111 (87%), Gaps = 3/111 (2%) Strand = Plus / Minus Query: 146 ctactttggttcaacctttgactggaaggaatatcctccgctgtagtcgtcgaacgagtc 205 |||||| ||||| | ||| || ||||||||||| ||||||||||||||| |||||||| Sbjct: 12095949 ctacttcggttcgatcttggattggaaggaataccctccgctgtagtcg---aacgagtc 12095893 Query: 206 ggtgctcatgcccttgtccttgtttgggagaggatcattgtaagggtggcg 256 |||||||||| |||||||||| || ||||||||||| |||||||| ||||| Sbjct: 12095892 ggtgctcatgtccttgtccttcttcgggagaggatcgttgtaaggatggcg 12095842
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 105 bits (53), Expect = 7e-20 Identities = 97/111 (87%), Gaps = 3/111 (2%) Strand = Plus / Minus Query: 146 ctactttggttcaacctttgactggaaggaatatcctccgctgtagtcgtcgaacgagtc 205 |||||| ||||| | ||| || ||||||||||| ||||||||||||||| |||||||| Sbjct: 12092712 ctacttcggttcgatcttggattggaaggaataccctccgctgtagtcg---aacgagtc 12092656 Query: 206 ggtgctcatgcccttgtccttgtttgggagaggatcattgtaagggtggcg 256 |||||||||| |||||||||| || ||||||||||| |||||||| ||||| Sbjct: 12092655 ggtgctcatgtccttgtccttcttcgggagaggatcgttgtaaggatggcg 12092605
>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20, complete sequence Length = 144969 Score = 105 bits (53), Expect = 7e-20 Identities = 97/111 (87%), Gaps = 3/111 (2%) Strand = Plus / Minus Query: 146 ctactttggttcaacctttgactggaaggaatatcctccgctgtagtcgtcgaacgagtc 205 |||||| ||||| | ||| || ||||||||||| ||||||||||||||| |||||||| Sbjct: 116529 ctacttcggttcgatcttggattggaaggaataccctccgctgtagtcg---aacgagtc 116473 Query: 206 ggtgctcatgcccttgtccttgtttgggagaggatcattgtaagggtggcg 256 |||||||||| |||||||||| || ||||||||||| |||||||| ||||| Sbjct: 116472 ggtgctcatgtccttgtccttcttcgggagaggatcgttgtaaggatggcg 116422
>ref|XM_637282.1| Dictyostelium discoideum hypothetical protein (DDB0205464), partial mRNA Length = 2472 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Plus Query: 106 acttgttgaggaggaagaaaa 126 ||||||||||||||||||||| Sbjct: 2085 acttgttgaggaggaagaaaa 2105
>gb|AC134927.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1036C05, complete sequence Length = 143400 Score = 42.1 bits (21), Expect = 0.87 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 gcatgctacttgttgaggaggaaga 123 |||||| |||||||||||||||||| Sbjct: 49432 gcatgccacttgttgaggaggaaga 49456
>ref|XM_369504.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG05960.4) partial mRNA Length = 5220 Score = 42.1 bits (21), Expect = 0.87 Identities = 24/25 (96%) Strand = Plus / Plus Query: 192 tcgtcgaacgagtcggtgctcatgc 216 |||||||||||| |||||||||||| Sbjct: 3727 tcgtcgaacgagacggtgctcatgc 3751
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 0.87 Identities = 24/25 (96%) Strand = Plus / Plus Query: 99 gcatgctacttgttgaggaggaaga 123 |||||| |||||||||||||||||| Sbjct: 16098262 gcatgccacttgttgaggaggaaga 16098286
>emb|BX510325.3| Zebrafish DNA sequence from clone CH211-149A22 in linkage group 19, complete sequence Length = 147275 Score = 42.1 bits (21), Expect = 0.87 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 tactttggttcaacctttgac 167 ||||||||||||||||||||| Sbjct: 120178 tactttggttcaacctttgac 120198
>gb|AC138395.8| Mus musculus chromosome 3, clone RP24-128I24, complete sequence Length = 171020 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 atgtaaaatcactctaataa 37 |||||||||||||||||||| Sbjct: 150764 atgtaaaatcactctaataa 150783
>gb|AC108813.8| Mus musculus chromosome 1, clone RP23-320P13, complete sequence Length = 198759 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 236 aggatcattgtaagggtggc 255 |||||||||||||||||||| Sbjct: 85545 aggatcattgtaagggtggc 85526
>gb|AC140985.3| Mus musculus BAC clone RP23-60H23 from chromosome 13, complete sequence Length = 222741 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 aaatcacatagaataacaat 72 |||||||||||||||||||| Sbjct: 143575 aaatcacatagaataacaat 143556
>gb|AC159968.3| Mus musculus chromosome 3, clone RP23-256J12, complete sequence Length = 153684 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 atgtaaaatcactctaataa 37 |||||||||||||||||||| Sbjct: 91147 atgtaaaatcactctaataa 91166
>gb|AC154604.2| Mus musculus BAC clone RP23-348F20 from chromosome 17, complete sequence Length = 198374 Score = 40.1 bits (20), Expect = 3.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 gtgctcatgcccttgtcctt 226 |||||||||||||||||||| Sbjct: 141306 gtgctcatgcccttgtcctt 141325 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,211,976 Number of Sequences: 3902068 Number of extensions: 2211976 Number of successful extensions: 43161 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43107 Number of HSP's gapped (non-prelim): 51 length of query: 265 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 243 effective length of database: 17,147,199,772 effective search space: 4166769544596 effective search space used: 4166769544596 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)