ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39d12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 105 7e-20
2dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 105 7e-20
3gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome... 105 7e-20
4ref|XM_637282.1| Dictyostelium discoideum hypothetical protein (... 42 0.87
5gb|AC134927.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.87
6ref|XM_369504.1| Magnaporthe grisea 70-15 chromosome III hypothe... 42 0.87
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.87
8emb|BX510325.3| Zebrafish DNA sequence from clone CH211-149A22 i... 42 0.87
9gb|AC138395.8| Mus musculus chromosome 3, clone RP24-128I24, com... 40 3.4
10gb|AC108813.8| Mus musculus chromosome 1, clone RP23-320P13, com... 40 3.4
11gb|AC140985.3| Mus musculus BAC clone RP23-60H23 from chromosome... 40 3.4
12gb|AC159968.3| Mus musculus chromosome 3, clone RP23-256J12, com... 40 3.4
13gb|AC154604.2| Mus musculus BAC clone RP23-348F20 from chromosom... 40 3.4

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  105 bits (53), Expect = 7e-20
 Identities = 97/111 (87%), Gaps = 3/111 (2%)
 Strand = Plus / Minus

                                                                            
Query: 146      ctactttggttcaacctttgactggaaggaatatcctccgctgtagtcgtcgaacgagtc 205
                |||||| ||||| | ||| || ||||||||||| |||||||||||||||   ||||||||
Sbjct: 12095949 ctacttcggttcgatcttggattggaaggaataccctccgctgtagtcg---aacgagtc 12095893

                                                                   
Query: 206      ggtgctcatgcccttgtccttgtttgggagaggatcattgtaagggtggcg 256
                |||||||||| |||||||||| || ||||||||||| |||||||| |||||
Sbjct: 12095892 ggtgctcatgtccttgtccttcttcgggagaggatcgttgtaaggatggcg 12095842



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  105 bits (53), Expect = 7e-20
 Identities = 97/111 (87%), Gaps = 3/111 (2%)
 Strand = Plus / Minus

                                                                            
Query: 146      ctactttggttcaacctttgactggaaggaatatcctccgctgtagtcgtcgaacgagtc 205
                |||||| ||||| | ||| || ||||||||||| |||||||||||||||   ||||||||
Sbjct: 12092712 ctacttcggttcgatcttggattggaaggaataccctccgctgtagtcg---aacgagtc 12092656

                                                                   
Query: 206      ggtgctcatgcccttgtccttgtttgggagaggatcattgtaagggtggcg 256
                |||||||||| |||||||||| || ||||||||||| |||||||| |||||
Sbjct: 12092655 ggtgctcatgtccttgtccttcttcgggagaggatcgttgtaaggatggcg 12092605



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>gb|AC137547.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0052J20,
              complete sequence
          Length = 144969

 Score =  105 bits (53), Expect = 7e-20
 Identities = 97/111 (87%), Gaps = 3/111 (2%)
 Strand = Plus / Minus

                                                                          
Query: 146    ctactttggttcaacctttgactggaaggaatatcctccgctgtagtcgtcgaacgagtc 205
              |||||| ||||| | ||| || ||||||||||| |||||||||||||||   ||||||||
Sbjct: 116529 ctacttcggttcgatcttggattggaaggaataccctccgctgtagtcg---aacgagtc 116473

                                                                 
Query: 206    ggtgctcatgcccttgtccttgtttgggagaggatcattgtaagggtggcg 256
              |||||||||| |||||||||| || ||||||||||| |||||||| |||||
Sbjct: 116472 ggtgctcatgtccttgtccttcttcgggagaggatcgttgtaaggatggcg 116422



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>ref|XM_637282.1| Dictyostelium discoideum hypothetical protein (DDB0205464), partial
            mRNA
          Length = 2472

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 106  acttgttgaggaggaagaaaa 126
            |||||||||||||||||||||
Sbjct: 2085 acttgttgaggaggaagaaaa 2105



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>gb|AC134927.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1036C05,
             complete sequence
          Length = 143400

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 99    gcatgctacttgttgaggaggaaga 123
             |||||| ||||||||||||||||||
Sbjct: 49432 gcatgccacttgttgaggaggaaga 49456



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>ref|XM_369504.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
            (MG05960.4) partial mRNA
          Length = 5220

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 192  tcgtcgaacgagtcggtgctcatgc 216
            |||||||||||| ||||||||||||
Sbjct: 3727 tcgtcgaacgagacggtgctcatgc 3751



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 99       gcatgctacttgttgaggaggaaga 123
                |||||| ||||||||||||||||||
Sbjct: 16098262 gcatgccacttgttgaggaggaaga 16098286



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>emb|BX510325.3| Zebrafish DNA sequence from clone CH211-149A22 in linkage group 19,
              complete sequence
          Length = 147275

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 147    tactttggttcaacctttgac 167
              |||||||||||||||||||||
Sbjct: 120178 tactttggttcaacctttgac 120198



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>gb|AC138395.8| Mus musculus chromosome 3, clone RP24-128I24, complete sequence
          Length = 171020

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     atgtaaaatcactctaataa 37
              ||||||||||||||||||||
Sbjct: 150764 atgtaaaatcactctaataa 150783



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>gb|AC108813.8| Mus musculus chromosome 1, clone RP23-320P13, complete sequence
          Length = 198759

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   aggatcattgtaagggtggc 255
             ||||||||||||||||||||
Sbjct: 85545 aggatcattgtaagggtggc 85526



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>gb|AC140985.3| Mus musculus BAC clone RP23-60H23 from chromosome 13, complete sequence
          Length = 222741

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     aaatcacatagaataacaat 72
              ||||||||||||||||||||
Sbjct: 143575 aaatcacatagaataacaat 143556



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>gb|AC159968.3| Mus musculus chromosome 3, clone RP23-256J12, complete sequence
          Length = 153684

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    atgtaaaatcactctaataa 37
             ||||||||||||||||||||
Sbjct: 91147 atgtaaaatcactctaataa 91166



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>gb|AC154604.2| Mus musculus BAC clone RP23-348F20 from chromosome 17, complete sequence
          Length = 198374

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 207    gtgctcatgcccttgtcctt 226
              ||||||||||||||||||||
Sbjct: 141306 gtgctcatgcccttgtcctt 141325


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,211,976
Number of Sequences: 3902068
Number of extensions: 2211976
Number of successful extensions: 43161
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43107
Number of HSP's gapped (non-prelim): 51
length of query: 265
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 243
effective length of database: 17,147,199,772
effective search space: 4166769544596
effective search space used: 4166769544596
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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