ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CETN2_MOUSE (Q9R1K9) Centrin-2 (Caltractin isoform 1) 28 6.4
2CETN2_HUMAN (P41208) Centrin-2 (Caltractin isoform 1) 28 6.4
3PECR_CAVPO (Q9JIF5) Peroxisomal trans-2-enoyl-CoA reductase (EC ... 28 6.4
4EXT2_DROME (Q9Y169) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225) (P... 28 6.4
5YDFE_ECOLI (Q47138) Hypothetical protein ydfE (ORF6) (Fragment) 28 8.3
6CETN1_MOUSE (P41209) Centrin-1 (Caltractin) 28 8.3
7ZMYM3_MOUSE (Q9JLM4) Zinc finger MYM-type protein 3 (Zinc finger... 28 8.3
8ZMYM3_HUMAN (Q14202) Zinc finger MYM-type protein 3 (Zinc finger... 28 8.3

>CETN2_MOUSE (Q9R1K9) Centrin-2 (Caltractin isoform 1)|
          Length = 172

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 240 LPLISSKIDPSDTELEIMKRCTPQESGGNFPVEFSNDKRLARNLADALT 386
           L +++ K+   DT+ EI+K     +      + F N KR+A+ L + LT
Sbjct: 90  LTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLT 138



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>CETN2_HUMAN (P41208) Centrin-2 (Caltractin isoform 1)|
          Length = 172

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 240 LPLISSKIDPSDTELEIMKRCTPQESGGNFPVEFSNDKRLARNLADALT 386
           L +++ K+   DT+ EI+K     +      + F N KR+A+ L + LT
Sbjct: 90  LTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLT 138



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>PECR_CAVPO (Q9JIF5) Peroxisomal trans-2-enoyl-CoA reductase (EC 1.3.1.38)|
          Length = 302

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
 Frame = -2

Query: 403 HNACLTVSASARFRANRLSLENSTGKFPPDSCGVHLFIISSSVSEGSILELMR------G 242
           H  C  V AS +F   R + E      PP +      I  +   E  +  LM+      G
Sbjct: 40  HLGCNVVIASRKFDRLRAAAEELKATLPPSNKAEVTPIQCNIRKEEEVNNLMKSTLALYG 99

Query: 241 RVNFGAYEREGQFWS 197
           +++F      GQFWS
Sbjct: 100 KIDFLVNNGGGQFWS 114



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>EXT2_DROME (Q9Y169) Exostosin-2 (EC 2.4.1.224) (EC 2.4.1.225) (Protein sister|
           of tout-velu)
          Length = 717

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 19/75 (25%), Positives = 33/75 (44%)
 Frame = +3

Query: 123 ILYTGTCTNIYISAKDKCPCSPSHKLQNWPSLS*APKLTLPLISSKIDPSDTELEIMKRC 302
           +L  G C N+ ++ +  CP S  HK   +P L    K  L   S ++   D    + + C
Sbjct: 282 LLLLGACENLDLTMR--CPLSQHHKSLEYPRLLSRGKFCLLGRSLRMGQPDLVEIMSQHC 339

Query: 303 TPQESGGNFPVEFSN 347
            P  +  N+ + F +
Sbjct: 340 IPVIAVDNYVLPFED 354



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>YDFE_ECOLI (Q47138) Hypothetical protein ydfE (ORF6) (Fragment)|
          Length = 255

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 373 ARFRANRLSLENSTGKFPPDSCGVH 299
           AR RAN+   ENSTGK  P    +H
Sbjct: 216 ARARANQQYTENSTGKISPVIAAIH 240



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>CETN1_MOUSE (P41209) Centrin-1 (Caltractin)|
          Length = 172

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 240 LPLISSKIDPSDTELEIMKRCTPQESGGNFPVEFSNDKRLARNLADALT 386
           L +++ K+   DT+ EI+K     +      + F N KR+A  L ++LT
Sbjct: 90  LAVMTQKMAEKDTKEEILKAFRLFDDDETGKISFKNLKRVANELGESLT 138



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>ZMYM3_MOUSE (Q9JLM4) Zinc finger MYM-type protein 3 (Zinc finger protein 261)|
           (DXHXS6673E protein)
          Length = 1370

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -3

Query: 201 GAYERENKGIYLSQKCKYLCKYLYTI*PKSTLRSFAQHELFVSLYTVVTYG*LKQSGKVL 22
           GAY+++N  +Y    CK LCK    +   S +    +  LF SL    +Y  +KQ+G   
Sbjct: 488 GAYKKKNTRVYPCVWCKTLCKNFEML---SHVDRNGKTSLFCSLCCTTSYK-VKQAGLTG 543

Query: 21  P 19
           P
Sbjct: 544 P 544



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>ZMYM3_HUMAN (Q14202) Zinc finger MYM-type protein 3 (Zinc finger protein 261)|
           (DXS6673E protein)
          Length = 1370

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -3

Query: 201 GAYERENKGIYLSQKCKYLCKYLYTI*PKSTLRSFAQHELFVSLYTVVTYG*LKQSGKVL 22
           GAY+++N  +Y    CK LCK    +   S +    +  LF SL    +Y  +KQ+G   
Sbjct: 486 GAYKKKNTRVYPCVWCKTLCKNFEML---SHVDRNGKTSLFCSLCCTTSYK-VKQAGLTG 541

Query: 21  P 19
           P
Sbjct: 542 P 542


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,205,865
Number of Sequences: 219361
Number of extensions: 1251872
Number of successful extensions: 2816
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2810
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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