>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID|
            domain-containing protein 1B) (Osa homolog 2) (hOsa2)
            (p250R) (BRG1-binding protein hELD/OSA1) (BRG1-associated
            factor 250b) (BAF250B)
          Length = 2236

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = +2

Query: 281  PSIHHYGRQGGPTTAEPSP----KAQEAAAS-CRAWTGAAASQQGGSP 409
            PS     +QGGP    P P    KAQEAAA+  +A   +A S+QG  P
Sbjct: 905  PSSPGMSQQGGPGMGPPMPTVNRKAQEAAAAVMQAAANSAQSRQGSFP 952

>MTSS1_HUMAN (O43312) Metastasis suppressor protein 1 (Missing in metastasis|
           protein) (Metastasis suppressor YGL-1)
          Length = 755

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 308 GGPTTAEPSPKAQEAAASCRAWTGAAASQQG 400
           GGPTTA   P A E A   R+ T +AA++ G
Sbjct: 440 GGPTTASGPPAAAEEAQRPRSMTVSAATRPG 470

>RLUB_XANAC (Q8PK58) Ribosomal large subunit pseudouridine synthase B (EC|
           5.4.99.-) (rRNA-uridine isomerase B) (rRNA
           pseudouridylate synthase B)
          Length = 550

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +2

Query: 281 PSIHHYGRQGGPTTAEPSPKAQEAAASCRAWTGAAASQQGGSPTR 415
           PS H      GP T +  P A++     R  TG     + G P R
Sbjct: 397 PSGHRNAGPSGPGTGQARPYAKKGPGGARPGTGGPVGARSGGPGR 441

>OVO_DROME (P51521) Protein ovo (Protein shaven baby)|
          Length = 1351

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 254  REQQAP*IHPSIHHYGRQGGPTTAEPSPKAQEAAASCRAWTGAAAS 391
            ++Q  P  H S HH         + PSP A  AAA+  A   AAA+
Sbjct: 972  QQQPQPQSHHSHHHGHGHDNSNMSLPSPTAAAAAAAAAAAAAAAAA 1017

>ACK1_HUMAN (Q07912) Activated CDC42 kinase 1 (EC 2.7.10.2) (ACK-1) (Tyrosine|
            kinase non-receptor protein 2)
          Length = 1036

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 24/83 (28%), Positives = 29/83 (34%), Gaps = 13/83 (15%)
 Frame = +2

Query: 185  VRVSVHACLDPNRNNFTNN*QLAREQQAP*IHPSIHHYGRQG-GPTTAEPSPKAQ----- 346
            VR    A LDP  N  TNN         P     +   G  G GP    P+ K Q     
Sbjct: 907  VRPMPQAALDPKANFSTNNSNPGARPPPPRATARLPQRGCPGDGPEAGRPADKIQMAMVH 966

Query: 347  -------EAAASCRAWTGAAASQ 394
                   +AA  C  W+   A+Q
Sbjct: 967  GVTTEECQAALQCHGWSVQRAAQ 989

>TRUD_HALSA (Q9HSG5) Probable tRNA pseudouridine synthase D (EC 5.4.99.-)|
           (tRNA-uridine isomerase D) (tRNA pseudouridylate
           synthase D)
          Length = 434

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +2

Query: 308 GGPTTAEP--SPKAQEAAASCRAWTGAAA 388
           G PT  EP  S +A+E  A  R WTGA A
Sbjct: 207 GAPTEHEPADSQRAREYVAETRDWTGALA 235


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,378,890
Number of Sequences: 219361
Number of extensions: 724024
Number of successful extensions: 1871
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1868
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)