>VGNM_BPMV (P23009) Genome polyprotein M (RNA2 polyprotein) [Contains:|
           Movement protein (MP); Large coat protein (LCP) (Coat
           protein VP37); Small coat protein (SCP) (Coat protein
           VP23)]
          Length = 1018

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 203 NKPLSQLEKQASWEENCLVVQTVYIGD 283
           N P+S L + A+W++ CL+V+ V  G+
Sbjct: 873 NSPISNLLRVAAWKKGCLMVKVVMSGN 899

>VGNB_BPMV (Q9YJU5) Genome polyprotein B (RNA1 polyprotein) [Contains:|
           Protease cofactor (32 kDa protein); Putative helicase
           (EC 3.6.1.-) (NTP-binding protein) (NTB)
           (Membrane-binding protein) (58 kDa protein); Viral
           genome-linked protein (VPg); Picornain
          Length = 1850

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 9/37 (24%), Positives = 20/37 (54%)
 Frame = +3

Query: 117 LVSNCALPWSQHINHSQPNRSMLVRDATEINHFHSLR 227
           L+++C   W +H+   + N S +    +E  HF++ +
Sbjct: 640 LLAHCFTKWERHVKEQESNLSQIKGKKSESGHFYNFQ 676


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,551,754
Number of Sequences: 219361
Number of extensions: 978111
Number of successful extensions: 2089
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2089
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)