ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104750.1| Zea mays PCO077049 mRNA sequence 127 3e-26
2ref|NM_195184.1| Oryza sativa (japonica cultivar-group) putative... 101 2e-18
3dbj|AK066368.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
4gb|AC091238.2| Oryza sativa (japonica cultivar-group) chromosome... 60 6e-06
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 60 6e-06
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 60 6e-06
7emb|X63049.1|AQPETBDOP A.quadruplicatum petBD operon 42 1.4
8emb|BX537356.4| Zebrafish DNA sequence from clone DKEY-46P12 in ... 42 1.4
9gb|AC079183.5| Mus musculus strain C57BL6/J chromosome 6 clone R... 42 1.4
10emb|AL162633.3|CNS01RHY Human chromosome 14 DNA sequence BAC R-2... 42 1.4
11emb|AL355073.5|CNS05TC7 Human chromosome 14 DNA sequence BAC R-9... 42 1.4
12dbj|AP004895.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 1.4
13emb|X80345.1|HC28SRIB H.catenoides gene for 28S ribosomal RNA 42 1.4
14gb|AC122560.8| Mus musculus chromosome 15, clone RP24-93E14, com... 40 5.7
15ref|XM_512589.1| PREDICTED: Pan troglodytes similar to ZD52F10 p... 40 5.7
16gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 5.7
17gb|AC107679.19| Mus musculus chromosome 1, clone RP23-256H11, co... 40 5.7
18gb|AY622965.1| Homo sapiens dermokine-beta mRNA, complete cds 40 5.7
19gb|BC065111.1| Mus musculus RIKEN cDNA 4931407K02 gene, mRNA (cD... 40 5.7
20gb|AC135914.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
21gb|CP000238.1| Baumannia cicadellinicola str. Hc (Homalodisca co... 40 5.7
22gb|AY358412.1| Homo sapiens clone DNA59212 KFQG729 (UNQ729) mRNA... 40 5.7
23emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 40 5.7
24gb|BC035311.1| Homo sapiens dermokine, mRNA (cDNA clone MGC:2166... 40 5.7
25gb|AE006030.1| Caulobacter crescentus CB15 section 356 of 359 of... 40 5.7
26ref|NM_033317.2| Homo sapiens dermokine (ZD52F10), transcript va... 40 5.7
27gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 gen... 40 5.7
28dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 40 5.7
29ref|NM_029946.3| Mus musculus RIKEN cDNA 4931407K02 gene (493140... 40 5.7
30gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 40 5.7
31gb|AY789697.1| Homo sapiens dermokine-gamma 2 mRNA, complete cds... 40 5.7
32gb|AY789696.1| Homo sapiens dermokine-gamma 1 mRNA, complete cds... 40 5.7
33gb|AY789695.1| Homo sapiens dermokine-beta mRNA, complete cds 40 5.7
34gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 40 5.7
35gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 40 5.7
36dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
37gb|AC012074.9| Homo sapiens BAC clone RP11-458N5 from 2, complet... 40 5.7
38gb|U18530.1|SCE9871 Saccharomyces cerevisiae chromosome V cosmid... 40 5.7
39gb|AC138125.1| Homo sapiens chromosome 19 clone LLNLR-228H6, com... 40 5.7
40dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 40 5.7
41dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 40 5.7
42emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 40 5.7
43emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 40 5.7
44gb|AC002389.1|AC002389 Human DNA from chromosome 19 specific cos... 40 5.7
45emb|AL513354.14| Mouse DNA sequence from clone RP23-150J22 on ch... 40 5.7 
>gb|AY104750.1| Zea mays PCO077049 mRNA sequence
          Length = 3244

 Score =  127 bits (64), Expect = 3e-26
 Identities = 109/124 (87%)
 Strand = Plus / Minus

                                                                        
Query: 280  ccattgcctccttgacccgagaagcatcacttccctggccctgggcaagaccattcttgc 339
            ||||||| ||||||| | ||||||| ||||| |||||||||||||| |  || |||||||
Sbjct: 2973 ccattgcttccttgagctgagaagcgtcactcccctggccctgggcgacgccgttcttgc 2914

                                                                        
Query: 340  cgccgcctcctcttcccttgagtggtgcgattgaaggtgtaagccaatccaacaccttga 399
            |||| || ||||||||||||||||| || ||||||||||| ||||| |||||||||||||
Sbjct: 2913 cgccaccgcctcttcccttgagtggcgcaattgaaggtgttagccagtccaacaccttga 2854

                
Query: 400  agcc 403
            ||||
Sbjct: 2853 agcc 2850
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>ref|NM_195184.1| Oryza sativa (japonica cultivar-group) putative cytosolic tRNA-Ala
            synthetase (OSJNBb0022I16.6), mRNA
          Length = 2085

 Score =  101 bits (51), Expect = 2e-18
 Identities = 129/155 (83%)
 Strand = Plus / Minus

                                                                        
Query: 248  cagcttcatcgaagctatctgggtagcaagctccattgcctccttgacccgagaagcatc 307
            ||||||||| ||||||||||||||||||| |||||| || ||||| |   |||| || ||
Sbjct: 2079 cagcttcattgaagctatctgggtagcaacctccatagcttcctttagttgagaggcctc 2020

                                                                        
Query: 308  acttccctggccctgggcaagaccattcttgccgccgcctcctcttcccttgagtggtgc 367
            | ||||||||||||||||||  ||||||||||| || |||||  |||| ||||| || ||
Sbjct: 2019 agttccctggccctgggcaattccattcttgccaccacctccctttcctttgaggggcgc 1960

                                               
Query: 368  gattgaaggtgtaagccaatccaacaccttgaagc 402
             || || ||||| | ||||||||||||||| ||||
Sbjct: 1959 aatcgatggtgtcaaccaatccaacaccttcaagc 1925
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>dbj|AK066368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059M16, full
            insert sequence
          Length = 3214

 Score =  101 bits (51), Expect = 2e-18
 Identities = 129/155 (83%)
 Strand = Plus / Minus

                                                                        
Query: 248  cagcttcatcgaagctatctgggtagcaagctccattgcctccttgacccgagaagcatc 307
            ||||||||| ||||||||||||||||||| |||||| || ||||| |   |||| || ||
Sbjct: 3002 cagcttcattgaagctatctgggtagcaacctccatagcttcctttagttgagaggcctc 2943

                                                                        
Query: 308  acttccctggccctgggcaagaccattcttgccgccgcctcctcttcccttgagtggtgc 367
            | ||||||||||||||||||  ||||||||||| || |||||  |||| ||||| || ||
Sbjct: 2942 agttccctggccctgggcaattccattcttgccaccacctccctttcctttgaggggcgc 2883

                                               
Query: 368  gattgaaggtgtaagccaatccaacaccttgaagc 402
             || || ||||| | ||||||||||||||| ||||
Sbjct: 2882 aatcgatggtgtcaaccaatccaacaccttcaagc 2848
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>gb|AC091238.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0022I16, complete sequence
          Length = 127068

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 75/90 (83%)
 Strand = Plus / Minus

                                                                         
Query: 313   cctggccctgggcaagaccattcttgccgccgcctcctcttcccttgagtggtgcgattg 372
             |||||||||||||||  ||||||||||| || |||||  |||| ||||| || || || |
Sbjct: 56559 cctggccctgggcaattccattcttgccaccacctccctttcctttgaggggcgcaatcg 56500

                                           
Query: 373   aaggtgtaagccaatccaacaccttgaagc 402
             | ||||| | ||||||||||||||| ||||
Sbjct: 56499 atggtgtcaaccaatccaacaccttcaagc 56470



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 248   cagcttcatcgaagctatctgggtagcaagctccattgcctcctt 292
             ||||||||| ||||||||||||||||||| |||||| || |||||
Sbjct: 56729 cagcttcattgaagctatctgggtagcaacctccatagcttcctt 56685
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 75/90 (83%)
 Strand = Plus / Minus

                                                                           
Query: 313     cctggccctgggcaagaccattcttgccgccgcctcctcttcccttgagtggtgcgattg 372
               |||||||||||||||  ||||||||||| || |||||  |||| ||||| || || || |
Sbjct: 5293361 cctggccctgggcaattccattcttgccaccacctccctttcctttgaggggcgcaatcg 5293302

                                             
Query: 373     aaggtgtaagccaatccaacaccttgaagc 402
               | ||||| | ||||||||||||||| ||||
Sbjct: 5293301 atggtgtcaaccaatccaacaccttcaagc 5293272



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                            
Query: 248     cagcttcatcgaagctatctgggtagcaagctccattgcctcctt 292
               ||||||||| ||||||||||||||||||| |||||| || |||||
Sbjct: 5293531 cagcttcattgaagctatctgggtagcaacctccatagcttcctt 5293487



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 338      gccgccgcctcctcttccct 357
                ||||||||||||||||||||
Sbjct: 20868267 gccgccgcctcctcttccct 20868248
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 75/90 (83%)
 Strand = Plus / Minus

                                                                           
Query: 313     cctggccctgggcaagaccattcttgccgccgcctcctcttcccttgagtggtgcgattg 372
               |||||||||||||||  ||||||||||| || |||||  |||| ||||| || || || |
Sbjct: 5294148 cctggccctgggcaattccattcttgccaccacctccctttcctttgaggggcgcaatcg 5294089

                                             
Query: 373     aaggtgtaagccaatccaacaccttgaagc 402
               | ||||| | ||||||||||||||| ||||
Sbjct: 5294088 atggtgtcaaccaatccaacaccttcaagc 5294059



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                            
Query: 248     cagcttcatcgaagctatctgggtagcaagctccattgcctcctt 292
               ||||||||| ||||||||||||||||||| |||||| || |||||
Sbjct: 5294318 cagcttcattgaagctatctgggtagcaacctccatagcttcctt 5294274



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 338      gccgccgcctcctcttccct 357
                ||||||||||||||||||||
Sbjct: 20879531 gccgccgcctcctcttccct 20879512
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>emb|X63049.1|AQPETBDOP A.quadruplicatum petBD operon
          Length = 2858

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 331 cattcttgccgccgcctcctc 351
           |||||||||||||||||||||
Sbjct: 727 cattcttgccgccgcctcctc 747
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>emb|BX537356.4| Zebrafish DNA sequence from clone DKEY-46P12 in linkage group 7,
             complete sequence
          Length = 105480

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 133   agttgattttcgtgaataatt 153
             |||||||||||||||||||||
Sbjct: 74412 agttgattttcgtgaataatt 74392
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>gb|AC079183.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-258N2, complete
             sequence
          Length = 170233

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     aaataagtctgtactattatt 24
             |||||||||||||||||||||
Sbjct: 12115 aaataagtctgtactattatt 12095
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>emb|AL162633.3|CNS01RHY Human chromosome 14 DNA sequence BAC R-210O8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 164550

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 230   agtctcaacaaatcagctcagcttc 254
             ||||||| |||||||||||||||||
Sbjct: 60085 agtctcatcaaatcagctcagcttc 60061
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>emb|AL355073.5|CNS05TC7 Human chromosome 14 DNA sequence BAC R-930O11 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175988

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 230    agtctcaacaaatcagctcagcttc 254
              ||||||| |||||||||||||||||
Sbjct: 154766 agtctcatcaaatcagctcagcttc 154790
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>dbj|AP004895.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT02D01, TM0039,
             complete sequence
          Length = 91268

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 246   ctcagcttcatcgaagctatc 266
             |||||||||||||||||||||
Sbjct: 46883 ctcagcttcatcgaagctatc 46903
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>emb|X80345.1|HC28SRIB H.catenoides gene for 28S ribosomal RNA
          Length = 3655

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 273  gcaagctccattgcctccttg 293
            |||||||||||||||||||||
Sbjct: 2849 gcaagctccattgcctccttg 2869
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>gb|AC122560.8| Mus musculus chromosome 15, clone RP24-93E14, complete sequence
          Length = 174003

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 232    tctcaacaaatcagctcagc 251
              ||||||||||||||||||||
Sbjct: 108976 tctcaacaaatcagctcagc 108995
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>ref|XM_512589.1| PREDICTED: Pan troglodytes similar to ZD52F10 protein (LOC455950),
            mRNA
          Length = 2690

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 278  ctccattgcctccttgaccc 297
            ||||||||||||||||||||
Sbjct: 1222 ctccattgcctccttgaccc 1203
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>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
             sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   ccattgcctccttgacccga 299
             ||||||||||||||||||||
Sbjct: 21794 ccattgcctccttgacccga 21813
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>gb|AC107679.19| Mus musculus chromosome 1, clone RP23-256H11, complete sequence
          Length = 168732

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 309    cttccctggccctgggcaag 328
              ||||||||||||||||||||
Sbjct: 100668 cttccctggccctgggcaag 100687
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>gb|AY622965.1| Homo sapiens dermokine-beta mRNA, complete cds
          Length = 1431

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 ctccattgcctccttgaccc 297
           ||||||||||||||||||||
Sbjct: 598 ctccattgcctccttgaccc 579
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>gb|BC065111.1| Mus musculus RIKEN cDNA 4931407K02 gene, mRNA (cDNA clone MGC:86101
            IMAGE:30536704), complete cds
          Length = 5031

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 127  gcttccagttgattttcgtg 146
            ||||||||||||||||||||
Sbjct: 1265 gcttccagttgattttcgtg 1246
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>gb|AC135914.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0074P11, complete sequence
          Length = 148753

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 339   ccgccgcctcctcttccctt 358
             ||||||||||||||||||||
Sbjct: 85544 ccgccgcctcctcttccctt 85525
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>gb|CP000238.1| Baumannia cicadellinicola str. Hc (Homalodisca coagulata), complete
              genome
          Length = 686194

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     tataacactccatttgataa 60
              ||||||||||||||||||||
Sbjct: 292285 tataacactccatttgataa 292304
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>gb|AY358412.1| Homo sapiens clone DNA59212 KFQG729 (UNQ729) mRNA, complete cds
          Length = 1734

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 ctccattgcctccttgaccc 297
           ||||||||||||||||||||
Sbjct: 781 ctccattgcctccttgaccc 762
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>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 214     aatatgtatgaagaccagtc 233
               ||||||||||||||||||||
Sbjct: 2574907 aatatgtatgaagaccagtc 2574888
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>gb|BC035311.1| Homo sapiens dermokine, mRNA (cDNA clone MGC:21664 IMAGE:4752921),
           complete cds
          Length = 1982

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 ctccattgcctccttgaccc 297
           ||||||||||||||||||||
Sbjct: 775 ctccattgcctccttgaccc 756
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>gb|AE006030.1| Caulobacter crescentus CB15 section 356 of 359 of the complete genome
          Length = 11452

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 312  ccctggccctgggcaagacc 331
            ||||||||||||||||||||
Sbjct: 2649 ccctggccctgggcaagacc 2668
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>ref|NM_033317.2| Homo sapiens dermokine (ZD52F10), transcript variant 2, mRNA
          Length = 1982

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 ctccattgcctccttgaccc 297
           ||||||||||||||||||||
Sbjct: 775 ctccattgcctccttgaccc 756
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>gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 genomic sequence, complete
              sequence
          Length = 178022

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 338    gccgccgcctcctcttccct 357
              ||||||||||||||||||||
Sbjct: 130666 gccgccgcctcctcttccct 130647
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>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 214     aatatgtatgaagaccagtc 233
               ||||||||||||||||||||
Sbjct: 2656844 aatatgtatgaagaccagtc 2656825
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>ref|NM_029946.3| Mus musculus RIKEN cDNA 4931407K02 gene (4931407K02Rik), mRNA
          Length = 5031

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 127  gcttccagttgattttcgtg 146
            ||||||||||||||||||||
Sbjct: 1265 gcttccagttgattttcgtg 1246
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>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 214     aatatgtatgaagaccagtc 233
               ||||||||||||||||||||
Sbjct: 2583910 aatatgtatgaagaccagtc 2583891
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>gb|AY789697.1| Homo sapiens dermokine-gamma 2 mRNA, complete cds, alternatively
           spliced
          Length = 1293

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 ctccattgcctccttgaccc 297
           ||||||||||||||||||||
Sbjct: 604 ctccattgcctccttgaccc 585
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>gb|AY789696.1| Homo sapiens dermokine-gamma 1 mRNA, complete cds, alternatively
           spliced
          Length = 1257

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 ctccattgcctccttgaccc 297
           ||||||||||||||||||||
Sbjct: 604 ctccattgcctccttgaccc 585
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>gb|AY789695.1| Homo sapiens dermokine-beta mRNA, complete cds
          Length = 1437

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 ctccattgcctccttgaccc 297
           ||||||||||||||||||||
Sbjct: 604 ctccattgcctccttgaccc 585
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>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 214     aatatgtatgaagaccagtc 233
               ||||||||||||||||||||
Sbjct: 2595854 aatatgtatgaagaccagtc 2595835
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>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 214     aatatgtatgaagaccagtc 233
               ||||||||||||||||||||
Sbjct: 2647216 aatatgtatgaagaccagtc 2647197
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 339     ccgccgcctcctcttccctt 358
               ||||||||||||||||||||
Sbjct: 6854590 ccgccgcctcctcttccctt 6854571
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>gb|AC012074.9| Homo sapiens BAC clone RP11-458N5 from 2, complete sequence
          Length = 197652

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   tgccgccgcctcctcttccc 356
             ||||||||||||||||||||
Sbjct: 77341 tgccgccgcctcctcttccc 77360
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>gb|U18530.1|SCE9871 Saccharomyces cerevisiae chromosome V cosmids 9871, 8199, 9867, 9495
             and lambda clones 6693 and 5898
          Length = 62643

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 304   catcacttccctggccctgg 323
             ||||||||||||||||||||
Sbjct: 22165 catcacttccctggccctgg 22184
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>gb|AC138125.1| Homo sapiens chromosome 19 clone LLNLR-228H6, complete sequence
          Length = 11311

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 278  ctccattgcctccttgaccc 297
            ||||||||||||||||||||
Sbjct: 4989 ctccattgcctccttgaccc 5008
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>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 214     aatatgtatgaagaccagtc 233
               ||||||||||||||||||||
Sbjct: 2595548 aatatgtatgaagaccagtc 2595529
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>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 214     aatatgtatgaagaccagtc 233
               ||||||||||||||||||||
Sbjct: 2586418 aatatgtatgaagaccagtc 2586399
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>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 214     aatatgtatgaagaccagtc 233
               ||||||||||||||||||||
Sbjct: 2675152 aatatgtatgaagaccagtc 2675133
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>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 214     aatatgtatgaagaccagtc 233
               ||||||||||||||||||||
Sbjct: 2523311 aatatgtatgaagaccagtc 2523292
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>gb|AC002389.1|AC002389 Human DNA from chromosome 19 specific cosmid R28461, genomic
            sequence, complete sequence
          Length = 46275

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 278  ctccattgcctccttgaccc 297
            ||||||||||||||||||||
Sbjct: 2144 ctccattgcctccttgaccc 2163
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>emb|AL513354.14| Mouse DNA sequence from clone RP23-150J22 on chromosome 15, complete
              sequence
          Length = 227073

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    gcttccagttgattttcgtg 146
              ||||||||||||||||||||
Sbjct: 166338 gcttccagttgattttcgtg 166357


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,259,875
Number of Sequences: 3902068
Number of extensions: 4259875
Number of successful extensions: 83348
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83019
Number of HSP's gapped (non-prelim): 329
length of query: 424
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 402
effective length of database: 17,147,199,772
effective search space: 6893174308344
effective search space used: 6893174308344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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