Clone Information

BLAST Search Result

Clone Name	rbastl39c11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_001031597.1\| Gallus gallus poly(A) binding protein, cytop...	44	0.37
2	ref\|XM_428581.1\| PREDICTED: Gallus gallus similar to poly(A) bin...	44	0.37
3	emb\|AJ719881.1\| Gallus gallus mRNA for hypothetical protein, clo...	44	0.37
4	dbj\|AP008934.1\| Staphylococcus saprophyticus subsp. saprophyticu...	44	0.37
5	gb\|BC034057.1\| Mus musculus elastin, mRNA (cDNA clone IMAGE:4038...	42	1.5
6	gb\|AC091250.2\| Mus musculus strain C57BL6/J chromosome 5 clone R...	42	1.5
7	emb\|Z97339.2\|ATFCA4 Arabidopsis thaliana DNA chromosome 4, ESSA ...	42	1.5
8	emb\|AL161542.2\|ATCHRIV42 Arabidopsis thaliana DNA chromosome 4, ...	42	1.5
9	ref\|NM_007925.2\| Mus musculus elastin (Eln), mRNA	42	1.5
10	dbj\|AK080277.1\| Mus musculus 3 days neonate thymus cDNA, RIKEN f...	42	1.5
11	dbj\|AK041860.1\| Mus musculus 3 days neonate thymus cDNA, RIKEN f...	42	1.5
12	gb\|AC092122.5\| Homo sapiens chromosome 16 clone RP11-102F12, com...	42	1.5
13	gb\|AF289665.1\|AF289665 Mus musculus EIF4H gene, partial cds; LIM...	42	1.5
14	gb\|BC051649.1\| Mus musculus elastin, mRNA (cDNA clone MGC:51697 ...	42	1.5
15	gb\|U08210.1\|MMU08210 Mus musculus tropoelastin mRNA, complete cds	42	1.5
16	gb\|CP000153.1\| Thiomicrospira denitrificans ATCC 33889, complete...	40	5.8
17	gb\|BT023919.1\| Drosophila melanogaster RH42017 full insert cDNA	40	5.8
18	ref\|XM_458224.1\| Debaryomyces hansenii CBS767 hypothetical prote...	40	5.8
19	gb\|DQ491003.1\| Chlorella virus AR158 ctg_1047243734156 genomic s...	40	5.8
20	gb\|DQ491002.1\| Paramecium bursaria Chlorella virus NY2A Chlorell...	40	5.8
21	emb\|CR450841.7\| Zebrafish DNA sequence from clone DKEY-16N9 in l...	40	5.8
22	gb\|AC023483.5\| Homo sapiens chromosome 3 clone RP11-453A3 map 3p...	40	5.8
23	gb\|AC034191.6\| Homo sapiens chromosome 3 clone RP11-344L9 map 3p...	40	5.8
24	emb\|AL359692.9\| Human DNA sequence from clone RP11-3J11 on chrom...	40	5.8
25	emb\|AL132875.22\|HSDJ92C4 Human DNA sequence from clone RP1-92C4 ...	40	5.8
26	emb\|AL121748.7\|HSA342D11 Human DNA sequence from clone RP11-342D...	40	5.8
27	emb\|AL096867.15\|HSJ365O19 Human DNA sequence from clone RP3-365O...	40	5.8
28	emb\|AL035073.7\|HS997O15 Human DNA sequence from clone RP5-997O15...	40	5.8
29	emb\|CR382135.1\| Debaryomyces hansenii chromosome C of strain CBS...	40	5.8
30	emb\|AL031765.1\|DMC22E5 Drosophila melanogaster cosmid clone 22E5	40	5.8
31	emb\|BX936428.10\| Zebrafish DNA sequence from clone RP71-19F19 in...	40	5.8
32	gb\|AC105055.2\| Drosophila melanogaster X BAC RP98-5N9 (Roswell P...	40	5.8
33	ref\|NM_130616.2\| Drosophila melanogaster CG4290-RA (CG4290), mRNA	40	5.8
34	gb\|AC104146.4\| Drosophila melanogaster X BAC RP98-32O19 (Roswell...	40	5.8
35	gb\|AF116684.1\|AF116684 Homo sapiens PRO2037 mRNA, complete cds	40	5.8
36	emb\|BX649392.6\| Zebrafish DNA sequence from clone DKEY-84J12 in ...	40	5.8
37	gb\|AF279650.1\|AF279649S2 Homo sapiens ELOVL4 gene, exon 2	40	5.8
38	gb\|AC009953.4\| Homo sapiens BAC clone RP11-193F16 from 2, comple...	40	5.8
39	gb\|AC131532.7\| Homo sapiens 12 BAC RP11-408B11 (Roswell Park Can...	40	5.8
40	emb\|X79794.1\|NTPNLA35 N.tabacum mRNA pNLA-35	40	5.8
41	emb\|BX664610.10\| Zebrafish DNA sequence from clone DKEY-11N6 in ...	40	5.8
42	emb\|BX927238.7\| Zebrafish DNA sequence from clone DKEY-98N4 in l...	40	5.8
43	gb\|AE003422.2\| Drosophila melanogaster chromosome X, section 6 o...	40	5.8
44	gb\|CP000155.1\| Hahella chejuensis KCTC 2396, complete genome	40	5.8
45	emb\|AL669891.12\| Mouse DNA sequence from clone RP23-271F3 on chr...	40	5.8

>ref|NM_001031597.1| Gallus gallus poly(A) binding protein, cytoplasmic 1 (PABPC1), mRNA
          Length = 2853

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 402  tcctgcagcagcagctactgca 423
            ||||||||||||||||||||||
Sbjct: 1958 tcctgcagcagcagctactgca 1979

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>ref|XM_428581.1| PREDICTED: Gallus gallus similar to poly(A) binding protein,
           cytoplasmic 1 (LOC431029), partial mRNA
          Length = 559

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 402 tcctgcagcagcagctactgca 423
           ||||||||||||||||||||||
Sbjct: 237 tcctgcagcagcagctactgca 258

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>emb|AJ719881.1| Gallus gallus mRNA for hypothetical protein, clone 7l20
          Length = 2853

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 402  tcctgcagcagcagctactgca 423
            ||||||||||||||||||||||
Sbjct: 1958 tcctgcagcagcagctactgca 1979

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>dbj|AP008934.1| Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 DNA, complete
               genome
          Length = 2516575

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 32      tgataatgaacataactcagcaagta 57
               ||||| ||||||||||||||||||||
Sbjct: 2239322 tgatactgaacataactcagcaagta 2239297

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>gb|BC034057.1| Mus musculus elastin, mRNA (cDNA clone IMAGE:4038838), with
           apparent retained intron
          Length = 3114

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 399 aactcctgcagcagcagctactgca 423
           ||||||||||||||||||| |||||
Sbjct: 615 aactcctgcagcagcagctgctgca 639

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>gb|AC091250.2| Mus musculus strain C57BL6/J chromosome 5 clone RP23-315E2, complete
             sequence
          Length = 201395

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 399   aactcctgcagcagcagctactgca 423
             ||||||||||||||||||| |||||
Sbjct: 63372 aactcctgcagcagcagctgctgca 63348

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>emb|Z97339.2|ATFCA4 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 4
          Length = 205065

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 37     atgaacataactcagcaagta 57
              |||||||||||||||||||||
Sbjct: 161024 atgaacataactcagcaagta 161004

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>emb|AL161542.2|ATCHRIV42 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 42
          Length = 195068

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 37     atgaacataactcagcaagta 57
              |||||||||||||||||||||
Sbjct: 118078 atgaacataactcagcaagta 118058

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>ref|NM_007925.2| Mus musculus elastin (Eln), mRNA
          Length = 3782

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 399  aactcctgcagcagcagctactgca 423
            ||||||||||||||||||| |||||
Sbjct: 1079 aactcctgcagcagcagctgctgca 1103

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>dbj|AK080277.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630021B08 product:elastin, full insert
            sequence
          Length = 3751

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 399  aactcctgcagcagcagctactgca 423
            ||||||||||||||||||| |||||
Sbjct: 1102 aactcctgcagcagcagctgctgca 1126

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>dbj|AK041860.1| Mus musculus 3 days neonate thymus cDNA, RIKEN full-length enriched
            library, clone:A630042I19 product:elastin, full insert
            sequence
          Length = 3782

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 399  aactcctgcagcagcagctactgca 423
            ||||||||||||||||||| |||||
Sbjct: 1079 aactcctgcagcagcagctgctgca 1103

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>gb|AC092122.5| Homo sapiens chromosome 16 clone RP11-102F12, complete sequence
          Length = 174809

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 228    gtatgagtaactctataagtgactc 252
              |||| ||||||||||||||||||||
Sbjct: 159013 gtataagtaactctataagtgactc 159037

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>gb|AF289665.1|AF289665 Mus musculus EIF4H gene, partial cds; LIMK1 gene, complete cds; and ELN
             gene, partial cds
          Length = 107257

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 399   aactcctgcagcagcagctactgca 423
             ||||||||||||||||||| |||||
Sbjct: 87472 aactcctgcagcagcagctgctgca 87448

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>gb|BC051649.1| Mus musculus elastin, mRNA (cDNA clone MGC:51697 IMAGE:5346255),
            complete cds
          Length = 3643

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 399  aactcctgcagcagcagctactgca 423
            ||||||||||||||||||| |||||
Sbjct: 1147 aactcctgcagcagcagctgctgca 1171

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>gb|U08210.1|MMU08210 Mus musculus tropoelastin mRNA, complete cds
          Length = 2651

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 399  aactcctgcagcagcagctactgca 423
            ||||||||||||||||||| |||||
Sbjct: 1065 aactcctgcagcagcagctgctgca 1089

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>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome
          Length = 2201561

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 406     gcagcagcagctactgcacc 425
               ||||||||||||||||||||
Sbjct: 2149817 gcagcagcagctactgcacc 2149836

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>gb|BT023919.1| Drosophila melanogaster RH42017 full insert cDNA
          Length = 5245

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 404  ctgcagcagcagctactgca 423
            ||||||||||||||||||||
Sbjct: 4032 ctgcagcagcagctactgca 4051

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>ref|XM_458224.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0C13585g)
           partial mRNA
          Length = 1566

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 27  attcttgataatgaacataa 46
           ||||||||||||||||||||
Sbjct: 226 attcttgataatgaacataa 207

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>gb|DQ491003.1| Chlorella virus AR158 ctg_1047243734156 genomic sequence
          Length = 344691

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 81     gtttttcaccattgtcatta 100
              ||||||||||||||||||||
Sbjct: 146460 gtttttcaccattgtcatta 146441

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>gb|DQ491002.1| Paramecium bursaria Chlorella virus NY2A Chlorella virus NY2A ctg_13
              genomic sequence
          Length = 368683

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     gtttttcaccattgtcatta 100
              ||||||||||||||||||||
Sbjct: 223180 gtttttcaccattgtcatta 223199

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>emb|CR450841.7| Zebrafish DNA sequence from clone DKEY-16N9 in linkage group 11, complete
              sequence
          Length = 263287

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 327    cagagcctttccaaaacatt 346
              ||||||||||||||||||||
Sbjct: 146376 cagagcctttccaaaacatt 146395

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>gb|AC023483.5| Homo sapiens chromosome 3 clone RP11-453A3 map 3p, complete sequence
          Length = 171051

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 181    cctctctgaagataaagttt 200
              ||||||||||||||||||||
Sbjct: 151741 cctctctgaagataaagttt 151722

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>gb|AC034191.6| Homo sapiens chromosome 3 clone RP11-344L9 map 3p, complete sequence
          Length = 172221

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   cctctctgaagataaagttt 200
             ||||||||||||||||||||
Sbjct: 87530 cctctctgaagataaagttt 87511

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>emb|AL359692.9| Human DNA sequence from clone RP11-3J11 on chromosome 9 Contains the
             ACTL7A and ACTL7B genes for  Actin-like 7A and 7B, the 3'
             end of the IKBKAP gene encoding an inhibitor of kappa
             light polypeptide gene enhancer in B-cells (kinase
             complex-associated protein (IKAP)), an ATP synthase F
             chain (mitochondrial) pseudogene, a novel gene, and a CpG
             island, complete sequence
          Length = 78376

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 15    atcatttttaccattcttgataat 38
             |||||||||| |||||||||||||
Sbjct: 53801 atcatttttatcattcttgataat 53778

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>emb|AL132875.22|HSDJ92C4 Human DNA sequence from clone RP1-92C4 on chromosome 6q14.1-15 Contains a
              novel pseudogene, a novel gene and the 3' part of the
              ELOVL4 gene for elongation of very long chain fatty acids
              (FEN1/Elo2, SUR4/Elo3, yeast)-like 4, complete sequence
          Length = 115009

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 178    atacctctctgaagataaag 197
              ||||||||||||||||||||
Sbjct: 109454 atacctctctgaagataaag 109473

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>emb|AL121748.7|HSA342D11 Human DNA sequence from clone RP11-342D11 on chromosome 10 Contains the
             3' end of the NRP1 gene for neuropilin 1 and two novel
             genes, complete sequence
          Length = 178183

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   gaaatatggattcttctttt 223
             ||||||||||||||||||||
Sbjct: 49365 gaaatatggattcttctttt 49346

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>emb|AL096867.15|HSJ365O19 Human DNA sequence from clone RP3-365O19 on chromosome 6q23.1-24.3
              Contains the 5' end of the GRM1 gene for metabotropic
              glutamate receptor 1, complete sequence
          Length = 156935

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     atcatttttaccattcttga 34
              ||||||||||||||||||||
Sbjct: 148569 atcatttttaccattcttga 148588

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>emb|AL035073.7|HS997O15 Human DNA sequence from clone RP5-997O15 on chromosome 20p11.21-12
             Contains genomic marker D20S904, STSs and GSSs, complete
             sequence
          Length = 97011

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 79    tagtttttcaccattgtcat 98
             ||||||||||||||||||||
Sbjct: 19973 tagtttttcaccattgtcat 19992

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>emb|CR382135.1| Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces
               hansenii
          Length = 1592360

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 27      attcttgataatgaacataa 46
               ||||||||||||||||||||
Sbjct: 1110265 attcttgataatgaacataa 1110246

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>emb|AL031765.1|DMC22E5 Drosophila melanogaster cosmid clone 22E5
          Length = 45672

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 404   ctgcagcagcagctactgca 423
             ||||||||||||||||||||
Sbjct: 23541 ctgcagcagcagctactgca 23522

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>emb|BX936428.10| Zebrafish DNA sequence from clone RP71-19F19 in linkage group 5, complete
              sequence
          Length = 188618

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 346    ttattatgcagtcatggcac 365
              ||||||||||||||||||||
Sbjct: 154235 ttattatgcagtcatggcac 154254

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>gb|AC105055.2| Drosophila melanogaster X BAC RP98-5N9 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 169618

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 404    ctgcagcagcagctactgca 423
              ||||||||||||||||||||
Sbjct: 164136 ctgcagcagcagctactgca 164117

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>ref|NM_130616.2| Drosophila melanogaster CG4290-RA (CG4290), mRNA
          Length = 4622

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 404  ctgcagcagcagctactgca 423
            ||||||||||||||||||||
Sbjct: 4032 ctgcagcagcagctactgca 4051

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>gb|AC104146.4| Drosophila melanogaster X BAC RP98-32O19 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 177724

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 404   ctgcagcagcagctactgca 423
             ||||||||||||||||||||
Sbjct: 30561 ctgcagcagcagctactgca 30542

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>gb|AF116684.1|AF116684 Homo sapiens PRO2037 mRNA, complete cds
          Length = 1330

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 358 catggcacataatctcttct 377
           ||||||||||||||||||||
Sbjct: 873 catggcacataatctcttct 854

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>emb|BX649392.6| Zebrafish DNA sequence from clone DKEY-84J12 in linkage group 5, complete
              sequence
          Length = 197352

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    ttattatgcagtcatggcac 365
              ||||||||||||||||||||
Sbjct: 102844 ttattatgcagtcatggcac 102825

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>gb|AF279650.1|AF279649S2 Homo sapiens ELOVL4 gene, exon 2
          Length = 450

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 178 atacctctctgaagataaag 197
           ||||||||||||||||||||
Sbjct: 381 atacctctctgaagataaag 362

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>gb|AC009953.4| Homo sapiens BAC clone RP11-193F16 from 2, complete sequence
          Length = 160810

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 358   catggcacataatctcttct 377
             ||||||||||||||||||||
Sbjct: 35073 catggcacataatctcttct 35092

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>gb|AC131532.7| Homo sapiens 12 BAC RP11-408B11 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 85167

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 216   cttcttttctgagtatgagtaact 239
             ||||||||||||| ||||||||||
Sbjct: 14761 cttcttttctgagaatgagtaact 14738

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>emb|X79794.1|NTPNLA35 N.tabacum mRNA pNLA-35
          Length = 3256

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 402  tcctgcagcagcagctactgcacc 425
            |||||| |||||||||||||||||
Sbjct: 2701 tcctgctgcagcagctactgcacc 2724

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>emb|BX664610.10| Zebrafish DNA sequence from clone DKEY-11N6 in linkage group 22,
             complete sequence
          Length = 206964

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   ctttccaaaacatttattat 352
             ||||||||||||||||||||
Sbjct: 31340 ctttccaaaacatttattat 31359

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>emb|BX927238.7| Zebrafish DNA sequence from clone DKEY-98N4 in linkage group 19,
            complete sequence
          Length = 52866

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 31   ttgataatgaacataactca 50
            ||||||||||||||||||||
Sbjct: 3070 ttgataatgaacataactca 3051

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>gb|AE003422.2| Drosophila melanogaster chromosome X, section 6 of 74 of the complete
              sequence
          Length = 300933

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 404    ctgcagcagcagctactgca 423
              ||||||||||||||||||||
Sbjct: 291113 ctgcagcagcagctactgca 291094

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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    tttctgagtatgagtaactc 240
              ||||||||||||||||||||
Sbjct: 694435 tttctgagtatgagtaactc 694454

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>emb|AL669891.12| Mouse DNA sequence from clone RP23-271F3 on chromosome X, complete
             sequence
          Length = 221898

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   aaacaatatgatcctcttca 163
             ||||||||||||||||||||
Sbjct: 30109 aaacaatatgatcctcttca 30090


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,162,928
Number of Sequences: 3902068
Number of extensions: 5162928
Number of successful extensions: 120917
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120780
Number of HSP's gapped (non-prelim): 137
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result