ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl39c10 |
|---|---|
| Clone Library Name | barley_pub |
>M3K4_MOUSE (O08648) Mitogen-activated protein kinase kinase kinase 4 (EC| 2.7.11.25) (MAPK/ERK kinase kinase 4) (MEK kinase 4) (MEKK 4) Length = 1597 Score = 30.0 bits (66), Expect = 1.5 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = -3 Query: 220 PECCPCARHQCML 182 PECCP AR +CML Sbjct: 37 PECCPAARQECML 49
>TAAR6_MOUSE (Q5QD13) Trace amine-associated receptor 6| Length = 345 Score = 30.0 bits (66), Expect = 1.5 Identities = 13/38 (34%), Positives = 18/38 (47%) Frame = +1 Query: 190 IGVLHTDSTPVPDSFFLKILRCQTVATGFSSMPYKMMR 303 I +LH P +F + L C G S MP+ M+R Sbjct: 55 ISILHFKQLHSPTNFLIASLACADFGVGISVMPFSMVR 92
>HUTH_STIAU (Q93TX3) Histidine ammonia-lyase (EC 4.3.1.3) (Histidase)| Length = 510 Score = 29.6 bits (65), Expect = 2.0 Identities = 12/35 (34%), Positives = 23/35 (65%) Frame = +1 Query: 217 PVPDSFFLKILRCQTVATGFSSMPYKMMRLAMALL 321 P+P++ L +LRC +A G+S + + + LA+ +L Sbjct: 95 PLPEARVLLLLRCNVLAKGYSGIRPETLALALEML 129
>ACA12_ARATH (Q9LY77) Putative calcium-transporting ATPase 12, plasma| membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 12) Length = 1033 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/29 (44%), Positives = 15/29 (51%) Frame = -3 Query: 124 CICLASFGWHVGFQFHVIP*LHIMIMSYF 38 CI LAS W +GF IP +SYF Sbjct: 987 CIALASLSWPIGFFTKFIPVSETPFLSYF 1015
>DDX1_DROME (Q9VNV3) ATP-dependent RNA helicase Ddx1 (EC 3.6.1.-) (DEAD box| protein 1) Length = 727 Score = 28.9 bits (63), Expect = 3.3 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = -2 Query: 161 MRGCCIWYFWPNL 123 +RGCCIWY PNL Sbjct: 641 VRGCCIWYNEPNL 653
>TAAR6_RAT (Q923Y5) Trace amine-associated receptor 6 (Trace amine receptor 4)| (TaR-4) Length = 345 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/41 (31%), Positives = 19/41 (46%) Frame = +1 Query: 181 IACIGVLHTDSTPVPDSFFLKILRCQTVATGFSSMPYKMMR 303 + I +LH P +F + L C G S MP+ M+R Sbjct: 52 LVMISILHFKQLHSPTNFLIASLACADFWVGVSVMPFSMVR 92
>RELA_SHIFL (P0AG23) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 744 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Frame = +1 Query: 127 FGQKYHIQQPRIIADK--DYIACIGVLHTDSTPVPDSF 234 F + + ++ RI+A++ D A +G++HT +PD F Sbjct: 270 FDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEF 307
>RELA_ECOLI (P0AG20) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 744 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Frame = +1 Query: 127 FGQKYHIQQPRIIADK--DYIACIGVLHTDSTPVPDSF 234 F + + ++ RI+A++ D A +G++HT +PD F Sbjct: 270 FDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEF 307
>RELA_ECOL6 (P0AG21) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 744 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Frame = +1 Query: 127 FGQKYHIQQPRIIADK--DYIACIGVLHTDSTPVPDSF 234 F + + ++ RI+A++ D A +G++HT +PD F Sbjct: 270 FDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEF 307
>RELA_ECO57 (P0AG22) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 744 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 2/38 (5%) Frame = +1 Query: 127 FGQKYHIQQPRIIADK--DYIACIGVLHTDSTPVPDSF 234 F + + ++ RI+A++ D A +G++HT +PD F Sbjct: 270 FDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEF 307
>TAAR6_PANTR (Q5W8W0) Trace amine-associated receptor 6 (Trace amine receptor 4)| (TaR-4) Length = 345 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/41 (29%), Positives = 19/41 (46%) Frame = +1 Query: 181 IACIGVLHTDSTPVPDSFFLKILRCQTVATGFSSMPYKMMR 303 + I +LH P +F + L C G + MP+ M+R Sbjct: 52 LVMISILHFKQLHSPTNFLVASLACADFLVGVTVMPFSMVR 92
>TAAR6_HUMAN (Q96RI8) Trace amine-associated receptor 6 (Trace amine receptor 4)| (TaR-4) Length = 345 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/41 (29%), Positives = 19/41 (46%) Frame = +1 Query: 181 IACIGVLHTDSTPVPDSFFLKILRCQTVATGFSSMPYKMMR 303 + I +LH P +F + L C G + MP+ M+R Sbjct: 52 LVMISILHFKQLHSPTNFLVASLACADFLVGVTVMPFSMVR 92
>STCS_EMENI (Q00714) Probable sterigmatocystin biosynthesis P450 monooxygenase| stcS (EC 1.14.-.-) (Cytochrome P450 59) Length = 505 Score = 27.7 bits (60), Expect = 7.4 Identities = 15/50 (30%), Positives = 19/50 (38%) Frame = -2 Query: 155 GCCIWYFWPNLYLPCQFWLACRFSVPCNSLVAHHDHVLFQLPSKWRKFPF 6 GC +W L+ W +P LV DH L+ WR F F Sbjct: 381 GCNVWTLTVALHHNSAHWAEAESFIPERWLVGS-DHPLYPAKGAWRAFEF 429
>Y467_BUCAP (Q8K982) UPF0133 protein BUsg467| Length = 109 Score = 27.7 bits (60), Expect = 7.4 Identities = 13/48 (27%), Positives = 22/48 (45%) Frame = +2 Query: 65 LGNYMELKTYMPTKTGKANTDLAKSTIYSSPASSRIKIT*HALVSCTR 208 LGN M+ M K K ++AK + + +K+T + +C R Sbjct: 7 LGNLMKQAQQMQEKMAKVQEEIAKMEVTGEAGAGLVKVTINGAHNCRR 54
>EGFR_CHICK (P13387) Epidermal growth factor receptor precursor (EC 2.7.10.1)| (CER) (Fragment) Length = 703 Score = 27.7 bits (60), Expect = 7.4 Identities = 16/66 (24%), Positives = 28/66 (42%) Frame = +1 Query: 58 CATRELHGTENLHANQNWQGKYRFGQKYHIQQPRIIADKDYIACIGVLHTDSTPVPDSFF 237 C L+ + N +GKY FG + P D+ +C+ +TD+ V ++ Sbjct: 271 CPPLVLYNPTTYQMDVNPEGKYSFGATCVRECPHNYVVTDHGSCVRSCNTDTYEVEENGV 330 Query: 238 LKILRC 255 K +C Sbjct: 331 RKCKKC 336
>SPP1_YEAST (Q03012) COMPASS component SPP1 (Complex proteins associated with| SET1 protein SPP1) (Set1C component SPP1) (Suppressor of PRP protein 1) Length = 353 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/50 (28%), Positives = 23/50 (46%) Frame = -2 Query: 254 HRRIFKKKLSGTGVLSVCKTPMHAM*SLSAMMRGCCIWYFWPNLYLPCQF 105 H + + +G V +CK P + L GC W+ + L++P QF Sbjct: 10 HSTLKRNPTTGEDVYCICKRPDYG--ELMVGCDGCDDWFHFTCLHIPEQF 57
>PCX_DROME (P18490) Protein pecanex| Length = 3433 Score = 27.3 bits (59), Expect = 9.7 Identities = 16/49 (32%), Positives = 23/49 (46%) Frame = +2 Query: 23 TCLVTEIRHDHDVQLGNYMELKTYMPTKTGKANTDLAKSTIYSSPASSR 169 TC+V+ R D D L + T T +G AN+ + T S+P R Sbjct: 1540 TCIVSTYRDDEDEDLSQMQHIATGTVTGSGTANSTALQLTT-STPKQHR 1587
>5HT1B_PANTR (P60020) 5-hydroxytryptamine 1B receptor (5-HT-1B) (Serotonin| receptor 1B) (5-HT1B) Length = 390 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/47 (27%), Positives = 22/47 (46%) Frame = -2 Query: 146 IWYFWPNLYLPCQFWLACRFSVPCNSLVAHHDHVLFQLPSKWRKFPF 6 +W F ++ LP FW + + V + DH+L+ + S F F Sbjct: 173 VWVFSISISLPPFFWRQAKAEEEVSECVVNTDHILYTVYSTVGAFYF 219
>5HT1B_HUMAN (P28222) 5-hydroxytryptamine 1B receptor (5-HT-1B) (Serotonin| receptor 1B) (5-HT1B) (5-HT-1D-beta) (Serotonin 1D beta receptor) (S12) Length = 390 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/47 (27%), Positives = 22/47 (46%) Frame = -2 Query: 146 IWYFWPNLYLPCQFWLACRFSVPCNSLVAHHDHVLFQLPSKWRKFPF 6 +W F ++ LP FW + + V + DH+L+ + S F F Sbjct: 173 VWVFSISISLPPFFWRQAKAEEEVSECVVNTDHILYTVYSTVGAFYF 219
>5HT1B_GORGO (Q9N2B7) 5-hydroxytryptamine 1B receptor (5-HT-1B) (Serotonin| receptor 1B) (5-HT1B) Length = 390 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/47 (27%), Positives = 22/47 (46%) Frame = -2 Query: 146 IWYFWPNLYLPCQFWLACRFSVPCNSLVAHHDHVLFQLPSKWRKFPF 6 +W F ++ LP FW + + V + DH+L+ + S F F Sbjct: 173 VWVFSISISLPPFFWRQAKAEEEVSECVVNTDHILYTVYSTVGAFYF 219
>Y5101_BRAJA (Q89K17) UPF0078 membrane protein blr5101| Length = 198 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/36 (36%), Positives = 18/36 (50%) Frame = -2 Query: 167 AMMRGCCIWYFWPNLYLPCQFWLACRFSVPCNSLVA 60 A+ G + FWP + C WLA F+ +SL A Sbjct: 110 AVYIGILLGLFWPAAVVFCLLWLATAFTTRYSSLSA 145
>YLAB_ECOLI (P77473) Hypothetical protein ylaB| Length = 516 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/31 (35%), Positives = 13/31 (41%) Frame = +3 Query: 192 WCLAHGQHSGARQFFFKDPPVPDSSNWVQQH 284 W HG H G + K P D W +QH Sbjct: 485 WLRQHGVHYGQGWLYSKALPKEDFLRWAEQH 515
>RHCE_HUMAN (P18577) Blood group Rh(CE) polypeptide (Rhesus C/E antigens)| (Rh30A) (RhIXB) (Rh polypeptide 1) (RhPI) Length = 416 Score = 27.3 bits (59), Expect = 9.7 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = -2 Query: 176 SLSAMMRGCCIWYFWPNLYLP 114 SLSAM+ +W FWP++ P Sbjct: 205 SLSAMLGALFLWMFWPSVNSP 225
>EGFR_HUMAN (P00533) Epidermal growth factor receptor precursor (EC 2.7.10.1)| (Receptor tyrosine-protein kinase ErbB-1) Length = 1210 Score = 27.3 bits (59), Expect = 9.7 Identities = 16/67 (23%), Positives = 27/67 (40%) Frame = +1 Query: 58 CATRELHGTENLHANQNWQGKYRFGQKYHIQQPRIIADKDYIACIGVLHTDSTPVPDSFF 237 C L+ + N +GKY FG + PR D+ +C+ DS + + Sbjct: 264 CPPLMLYNPTTYQMDVNPEGKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGV 323 Query: 238 LKILRCQ 258 K +C+ Sbjct: 324 RKCKKCE 330
>5HT1B_VULVU (Q6XXX8) 5-hydroxytryptamine 1B receptor (5-HT-1B) (Serotonin| receptor 1B) (5-HT1B) (5-HTR1B) Length = 389 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/47 (27%), Positives = 22/47 (46%) Frame = -2 Query: 146 IWYFWPNLYLPCQFWLACRFSVPCNSLVAHHDHVLFQLPSKWRKFPF 6 +W F ++ LP FW + + V + DH+L+ + S F F Sbjct: 172 VWVFSISISLPPFFWRQAKAEEEVSDCVVNTDHILYTVYSTVGAFYF 218
>5HT1B_CANFA (P79250) 5-hydroxytryptamine 1B receptor (5-HT-1B) (Serotonin| receptor 1B) (5-HT1B) (5-HTR1B) (5-HT1D subtype beta) Length = 389 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/47 (27%), Positives = 22/47 (46%) Frame = -2 Query: 146 IWYFWPNLYLPCQFWLACRFSVPCNSLVAHHDHVLFQLPSKWRKFPF 6 +W F ++ LP FW + + V + DH+L+ + S F F Sbjct: 172 VWVFSISISLPPFFWRQAKAEEEVSDCVVNTDHILYTVYSTVGAFYF 218 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,411,772 Number of Sequences: 219361 Number of extensions: 1082831 Number of successful extensions: 2834 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 2779 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2834 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
