Clone Name | rbastl39c10 |
---|---|
Clone Library Name | barley_pub |
>gb|BC041761.2| Homo sapiens dedicator of cytokinesis 5, mRNA (cDNA clone IMAGE:3912471), partial cds Length = 4186 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 agcaactgggttcagcagcatgcct 288 |||||||| |||||||||||||||| Sbjct: 1355 agcaactgtgttcagcagcatgcct 1379
>gb|BC057384.1| Homo sapiens dedicator of cytokinesis 5, mRNA (cDNA clone IMAGE:4283490), partial cds Length = 1185 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 264 agcaactgggttcagcagcatgcct 288 |||||||| |||||||||||||||| Sbjct: 80 agcaactgtgttcagcagcatgcct 56
>emb|CR933718.1| Homo sapiens mRNA; cDNA DKFZp779M164 (from clone DKFZp779M164) Length = 3719 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 agcaactgggttcagcagcatgcct 288 |||||||| |||||||||||||||| Sbjct: 3348 agcaactgtgttcagcagcatgcct 3372
>emb|CR627414.1| Homo sapiens mRNA; cDNA DKFZp451J181 (from clone DKFZp451J181) Length = 5480 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 agcaactgggttcagcagcatgcct 288 |||||||| |||||||||||||||| Sbjct: 8 agcaactgtgttcagcagcatgcct 32
>dbj|AK126249.1| Homo sapiens cDNA FLJ44261 fis, clone TLIVE2001327, moderately similar to Human DOCK180 protein mRNA Length = 3434 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 agcaactgggttcagcagcatgcct 288 |||||||| |||||||||||||||| Sbjct: 1893 agcaactgtgttcagcagcatgcct 1917
>ref|NM_024940.5| Homo sapiens dedicator of cytokinesis 5 (DOCK5), mRNA Length = 7555 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 agcaactgggttcagcagcatgcct 288 |||||||| |||||||||||||||| Sbjct: 4725 agcaactgtgttcagcagcatgcct 4749
>gb|AC091185.6| Homo sapiens chromosome 8, clone RP11-395I14, complete sequence Length = 189018 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 264 agcaactgggttcagcagcatgcct 288 |||||||| |||||||||||||||| Sbjct: 31064 agcaactgtgttcagcagcatgcct 31040
>gb|AC099476.6| Rattus norvegicus BAC CH230-159G8 (Children's Hospital Oakland Research Institute) complete sequence Length = 208229 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 13 aatttcctccacttgcttggtaact 37 ||||||||||||||||||| ||||| Sbjct: 196570 aatttcctccacttgcttgttaact 196546
>gb|AC128966.4| Rattus norvegicus BAC CH230-194D11 (Children's Hospital Oakland Research Institute) complete sequence Length = 214096 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 13 aatttcctccacttgcttggtaact 37 ||||||||||||||||||| ||||| Sbjct: 175311 aatttcctccacttgcttgttaact 175335
>emb|BX648352.1|HSM808500 Homo sapiens mRNA; cDNA DKFZp686D14185 (from clone DKFZp686D14185) Length = 4931 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 264 agcaactgggttcagcagcatgcct 288 |||||||| |||||||||||||||| Sbjct: 2866 agcaactgtgttcagcagcatgcct 2890
>ref|NM_174324.2| Bos taurus adenylate cyclase-inhibiting G alpha protein (GNAI1), mRNA Length = 3099 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aaatttcctccacttgcttg 31 |||||||||||||||||||| Sbjct: 2352 aaatttcctccacttgcttg 2371
>gb|AC161609.6| Mus musculus BAC clone RP23-139D15 from chromosome 14, complete sequence Length = 219723 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 catagcatgcattggtgtct 199 |||||||||||||||||||| Sbjct: 164270 catagcatgcattggtgtct 164289
>ref|XM_535402.2| PREDICTED: Canis familiaris similar to guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 (LOC478227), mRNA Length = 3079 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aaatttcctccacttgcttg 31 |||||||||||||||||||| Sbjct: 2362 aaatttcctccacttgcttg 2381
>gb|AC138400.12| Mus musculus chromosome 14, clone RP23-260C21, complete sequence Length = 213423 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 180 catagcatgcattggtgtct 199 |||||||||||||||||||| Sbjct: 44895 catagcatgcattggtgtct 44876
>emb|BX324199.7| Zebrafish DNA sequence from clone DKEYP-7D4 in linkage group 17, complete sequence Length = 69782 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 acaaaaatggaaatttcctc 21 |||||||||||||||||||| Sbjct: 37420 acaaaaatggaaatttcctc 37401
>emb|CR956396.6| Pig DNA sequence from clone CH242-205N12 on chromosome 7, complete sequence Length = 175108 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 acatggaactgaaaacctac 94 |||||||||||||||||||| Sbjct: 64639 acatggaactgaaaacctac 64620
>emb|AL591851.12| Mouse DNA sequence from clone RP23-43M4 on chromosome 13 Contains a novel gene, an X-linked lymphocyte-regulated 5 (Xlr5) pseudogene and the 5' end of the gene for novel protein similar to human C6orf32 (KIAA0386, DIFF48), complete sequence Length = 53867 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 caaaaatggaaatttcctcc 22 |||||||||||||||||||| Sbjct: 36123 caaaaatggaaatttcctcc 36142
>gb|BC105419.1| Bos taurus adenylate cyclase-inhibiting G alpha protein, mRNA (cDNA clone MGC:128528 IMAGE:7984914), complete cds Length = 2825 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aaatttcctccacttgcttg 31 |||||||||||||||||||| Sbjct: 2394 aaatttcctccacttgcttg 2413
>emb|BX004772.17| Zebrafish DNA sequence from clone DKEY-15L1 in linkage group 7, complete sequence Length = 210545 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 acaaaaatggaaatttcctc 21 |||||||||||||||||||| Sbjct: 6404 acaaaaatggaaatttcctc 6423
>emb|AL954383.13| Zebrafish DNA sequence from clone CH211-226M11 in linkage group 17, complete sequence Length = 206679 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 aacaaaaatggaaatttcctccac 24 |||||||||||||||||| ||||| Sbjct: 177994 aacaaaaatggaaatttcttccac 178017
>gb|AC108670.10| Homo sapiens 3 BAC RP11-218A22 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 163157 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 tgggttcagcagcatgcctt 289 |||||||||||||||||||| Sbjct: 157326 tgggttcagcagcatgcctt 157345
>gb|AC163039.6| Mus musculus BAC clone RP23-188J1 from chromosome 14, complete sequence Length = 198538 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 catagcatgcattggtgtct 199 |||||||||||||||||||| Sbjct: 20560 catagcatgcattggtgtct 20579
>emb|AL672242.12| Mouse DNA sequence from clone RP23-83P17 on chromosome 17, complete sequence Length = 222709 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 acatggaactgaaaacctac 94 |||||||||||||||||||| Sbjct: 54700 acatggaactgaaaacctac 54719
>emb|X03642.1|BTGIAR Bovine mRNA for alpha-subunit of G(i) protein (Gi=adenylate cyclase-inhibiting G-protein) Length = 3099 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 aaatttcctccacttgcttg 31 |||||||||||||||||||| Sbjct: 2352 aaatttcctccacttgcttg 2371 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,890,896 Number of Sequences: 3902068 Number of extensions: 2890896 Number of successful extensions: 54454 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54422 Number of HSP's gapped (non-prelim): 32 length of query: 336 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 314 effective length of database: 17,147,199,772 effective search space: 5384220728408 effective search space used: 5384220728408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)