ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MUTS_BUCAI (P57504) DNA mismatch repair protein mutS 30 1.8
2MUTS_BUCAP (Q8K9D2) DNA mismatch repair protein mutS 28 9.0

>MUTS_BUCAI (P57504) DNA mismatch repair protein mutS|
          Length = 802

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +1

Query: 322 VKANPFGTNLVSSRHPILLCFHRAPLVR 405
           + +  +G +L+ SRHP++ CF + P ++
Sbjct: 574 IMSEKYGISLLESRHPVVECFLKTPFIK 601



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>MUTS_BUCAP (Q8K9D2) DNA mismatch repair protein mutS|
          Length = 805

 Score = 28.1 bits (61), Expect = 9.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 337 FGTNLVSSRHPILLCFHRAPLV 402
           +G  LV SRHP++ CF   P +
Sbjct: 579 YGITLVESRHPVVECFLENPFI 600


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,948,920
Number of Sequences: 219361
Number of extensions: 1048005
Number of successful extensions: 2292
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2292
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2336739400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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