Clone Name | rbastl39c09 |
---|---|
Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | MUTS_BUCAI (P57504) DNA mismatch repair protein mutS | 30 | 1.8 | 2 | MUTS_BUCAP (Q8K9D2) DNA mismatch repair protein mutS | 28 | 9.0 |
---|
>MUTS_BUCAI (P57504) DNA mismatch repair protein mutS| Length = 802 Score = 30.4 bits (67), Expect = 1.8 Identities = 9/28 (32%), Positives = 19/28 (67%) Frame = +1 Query: 322 VKANPFGTNLVSSRHPILLCFHRAPLVR 405 + + +G +L+ SRHP++ CF + P ++ Sbjct: 574 IMSEKYGISLLESRHPVVECFLKTPFIK 601
>MUTS_BUCAP (Q8K9D2) DNA mismatch repair protein mutS| Length = 805 Score = 28.1 bits (61), Expect = 9.0 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +1 Query: 337 FGTNLVSSRHPILLCFHRAPLV 402 +G LV SRHP++ CF P + Sbjct: 579 YGITLVESRHPVVECFLENPFI 600 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,948,920 Number of Sequences: 219361 Number of extensions: 1048005 Number of successful extensions: 2292 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 2254 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2292 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)