Clone Information

BLAST Search Result

Clone Name	rbastl39c09
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_480189.1\| Oryza sativa (japonica cultivar-group), mRNA	96	1e-16
2	gb\|AY452478.1\| Oryza sativa (japonica cultivar-group) circadian ...	96	1e-16
3	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	96	1e-16
4	dbj\|AK121547.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	96	1e-16
5	dbj\|AK111893.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	96	1e-16
6	dbj\|AP004698.3\| Oryza sativa (japonica cultivar-group) genomic D...	96	1e-16
7	dbj\|AP004460.2\| Oryza sativa (japonica cultivar-group) genomic D...	96	1e-16
8	dbj\|AK104073.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	96	1e-16
9	dbj\|AB210845.1\| Lemna paucicostata LpLHY H1 mRNA for LHY homolog...	54	4e-04
10	gb\|AC155718.4\| Mus musculus 10 BAC RP24-217J7 (Roswell Park Canc...	42	1.4
11	emb\|AL441985.9\| Human DNA sequence from clone RP11-417D4 on chro...	42	1.4
12	emb\|AL354861.11\| Human DNA sequence from clone RP11-180I4 on chr...	42	1.4
13	emb\|AJ459419.1\|TRU459419 Takifugu rubripes cacng5 gene, prkca ge...	42	1.4
14	emb\|BX901901.6\| Zebrafish DNA sequence from clone CH211-223B8 in...	42	1.4
15	gb\|AC104512.11\| Drosophila melanogaster BAC RP98-39C15 (Roswell...	42	1.4
16	gb\|AE003442.3\| Drosophila melanogaster chromosome X, section 26 ...	42	1.4
17	gb\|AC160545.8\| Mus musculus chromosome 1, clone RP23-217K18, com...	40	5.7
18	gb\|AF499719.1\| Thellungiella halophila putative selenium-binding...	40	5.7
19	gb\|AC107846.4\| Mus musculus chromosome 1, clone RP23-309I23, com...	40	5.7
20	gb\|AC163687.5\| Mus musculus BAC clone RP23-3H13 from chromosome ...	40	5.7
21	gb\|AC124834.1\| Homo sapiens BAC clone RP11-542H16 from 7, comple...	40	5.7
22	emb\|AL606803.10\| Human DNA sequence from clone RP11-776H12 on ch...	40	5.7
23	emb\|AL590396.13\| Human DNA sequence from clone RP11-193H5 on chr...	40	5.7
24	emb\|AL355611.11\| Human DNA sequence from clone RP11-430K22 on ch...	40	5.7
25	emb\|AL121916.14\|HSJ189G13 Human DNA sequence from clone RP1-189G...	40	5.7
26	gb\|AC164638.4\| Mus musculus BAC clone RP23-198N12 from chromosom...	40	5.7
27	emb\|AL132969.2\|ATF8J2 Arabidopsis thaliana DNA chromosome 3, BAC...	40	5.7
28	gb\|AC023712.5\| Drosophila melanogaster X BAC RP98-1M22 (Roswell ...	40	5.7
29	gb\|AC023692.5\| Drosophila melanogaster X BAC RP98-15B10 (Roswell...	40	5.7
30	gb\|AC016644.9\| Homo sapiens chromosome 5 clone RP11-52M14, compl...	40	5.7
31	gb\|AC010767.7\| Homo sapiens chromosome 17, clone RP11-188K10, co...	40	5.7
32	gb\|AC015943.7\| Homo sapiens chromosome 17, clone RP11-581B19, co...	40	5.7
33	gb\|AC073850.4\| Homo sapiens BAC clone RP11-697H17 from 7, comple...	40	5.7
34	gb\|AC008937.7\| Homo sapiens chromosome 5 clone CTD-2310F14, comp...	40	5.7
35	emb\|BX510996.12\| Zebrafish DNA sequence from clone DKEYP-81E1 in...	40	5.7
36	gb\|AC147097.3\| Pan troglodytes BAC clone RP43-51D4 from chromoso...	40	5.7
37	gb\|AC022464.4\|AC022464 Genomic sequence for Arabidopsis thaliana...	40	5.7
38	gb\|AC157819.5\| Mus musculus chromosome 3, clone RP24-273H20, com...	40	5.7
39	emb\|Y12736.2\|LLCPJW565 Lactococcus lactis subsp. cremoris plasmi...	40	5.7
40	gb\|AC154288.2\| Mus musculus BAC clone RP23-447G10 from 17, compl...	40	5.7
41	gb\|AE003433.3\| Drosophila melanogaster chromosome X, section 17 ...	40	5.7
42	gb\|AC163725.4\| Pan troglodytes BAC clone CH251-612A20 from chrom...	40	5.7
43	emb\|CR847844.6\| Zebrafish DNA sequence from clone DKEY-181C13 in...	40	5.7
44	emb\|CT009575.8\| Mouse DNA sequence from clone RP23-107N17 on chr...	40	5.7
45	gb\|AC103937.16\| Mus musculus chromosome 3, clone RP23-229C5, com...	40	5.7

>ref|XM_480189.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2178

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                        
Query: 316  ttcgctgtcaaggcgaatccttttggtaccaacctcgtcagcagccggcaccctattctc 375
            |||||| ||||| |||||||| |||||||||||||| ||   |||||| ||||| |||||
Sbjct: 2166 ttcgctctcaagacgaatcctcttggtaccaacctcatcgctagccggtaccctgttctc 2107

                                                
Query: 376  ctttgcttccaccgagcacctcttgtaaggtttgaa 411
            ||| |||||||| |||||||||||||| ||||||||
Sbjct: 2106 cttcgcttccactgagcacctcttgtatggtttgaa 2071

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>gb|AY452478.1| Oryza sativa (japonica cultivar-group) circadian oscillator component
            (COC1) mRNA, complete cds
          Length = 2608

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                        
Query: 316  ttcgctgtcaaggcgaatccttttggtaccaacctcgtcagcagccggcaccctattctc 375
            |||||| ||||| |||||||| |||||||||||||| ||   |||||| ||||| |||||
Sbjct: 2412 ttcgctctcaagacgaatcctcttggtaccaacctcatcgctagccggtaccctgttctc 2353

                                                
Query: 376  ctttgcttccaccgagcacctcttgtaaggtttgaa 411
            ||| |||||||| |||||||||||||| ||||||||
Sbjct: 2352 cttcgcttccactgagcacctcttgtatggtttgaa 2317



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 85/100 (85%), Gaps = 3/100 (3%)
 Strand = Plus / Minus

                                                                        
Query: 143  gctgctcggcaagcattaacatacaacacataacaaattgagttctgtgaaacactgcat 202
            |||||| |||||||||||| |||||||||| || |||||||||| |||||   | |||||
Sbjct: 2566 gctgcttggcaagcattaagatacaacacacaataaattgagtt-tgtgaggtaatgcat 2508

                                                    
Query: 203  tgcaaggactggcaagtcctatagtagcttagatgtaaat 242
            || |||| |||  ||||||||| |||||| ||||||||||
Sbjct: 2507 tggaaggtctg--aagtcctatggtagctcagatgtaaat 2470

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                           
Query: 316     ttcgctgtcaaggcgaatccttttggtaccaacctcgtcagcagccggcaccctattctc 375
               |||||| ||||| |||||||| |||||||||||||| ||   |||||| ||||| |||||
Sbjct: 3366760 ttcgctctcaagacgaatcctcttggtaccaacctcatcgctagccggtaccctgttctc 3366701

                                                   
Query: 376     ctttgcttccaccgagcacctcttgtaaggtttgaa 411
               ||| |||||||| |||||||||||||| ||||||||
Sbjct: 3366700 cttcgcttccactgagcacctcttgtatggtttgaa 3366665



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 84/100 (84%), Gaps = 3/100 (3%)
 Strand = Plus / Minus

                                                                           
Query: 143     gctgctcggcaagcattaacatacaacacataacaaattgagttctgtgaaacactgcat 202
               |||||| |||||||||||| |||||||||| || |||||||||| |||||   | |||||
Sbjct: 3366914 gctgcttggcaagcattaagatacaacacacaataaattgagtt-tgtgaggtaatgcat 3366856

                                                       
Query: 203     tgcaaggactggcaagtcctatagtagcttagatgtaaat 242
               || |||| |||  ||||||||| ||||||  |||||||||
Sbjct: 3366855 tggaaggtctg--aagtcctatggtagctcggatgtaaat 3366818

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>dbj|AK121547.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033032F11, full
           insert sequence
          Length = 650

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                       
Query: 316 ttcgctgtcaaggcgaatccttttggtaccaacctcgtcagcagccggcaccctattctc 375
           |||||| ||||| |||||||| |||||||||||||| ||   |||||| ||||| |||||
Sbjct: 359 ttcgctctcaagacgaatcctcttggtaccaacctcatcgctagccggtaccctgttctc 300

                                               
Query: 376 ctttgcttccaccgagcacctcttgtaaggtttgaa 411
           ||| |||||||| |||||||||||||| ||||||||
Sbjct: 299 cttcgcttccactgagcacctcttgtatggtttgaa 264



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 84/100 (84%), Gaps = 3/100 (3%)
 Strand = Plus / Minus

                                                                       
Query: 143 gctgctcggcaagcattaacatacaacacataacaaattgagttctgtgaaacactgcat 202
           |||||| |||||||||||| |||||||||| || |||||||||| |||||   | |||||
Sbjct: 513 gctgcttggcaagcattaagatacaacacacaataaattgagtt-tgtgaggtaatgcat 455

                                                   
Query: 203 tgcaaggactggcaagtcctatagtagcttagatgtaaat 242
           || |||| |||  ||||||||| ||||||  |||||||||
Sbjct: 454 tggaaggtctg--aagtcctatggtagctcggatgtaaat 417

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>dbj|AK111893.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071N16, full
            insert sequence
          Length = 3237

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                        
Query: 316  ttcgctgtcaaggcgaatccttttggtaccaacctcgtcagcagccggcaccctattctc 375
            |||||| ||||| |||||||| |||||||||||||| ||   |||||| ||||| |||||
Sbjct: 2957 ttcgctctcaagacgaatcctcttggtaccaacctcatcgctagccggtaccctgttctc 2898

                                                
Query: 376  ctttgcttccaccgagcacctcttgtaaggtttgaa 411
            ||| |||||||| |||||||||||||| ||||||||
Sbjct: 2897 cttcgcttccactgagcacctcttgtatggtttgaa 2862



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 84/100 (84%), Gaps = 3/100 (3%)
 Strand = Plus / Minus

                                                                        
Query: 143  gctgctcggcaagcattaacatacaacacataacaaattgagttctgtgaaacactgcat 202
            |||||| |||||||||||| |||||||||| || |||||||||| |||||   | |||||
Sbjct: 3111 gctgcttggcaagcattaagatacaacacacaataaattgagtt-tgtgaggtaatgcat 3053

                                                    
Query: 203  tgcaaggactggcaagtcctatagtagcttagatgtaaat 242
            || |||| |||  ||||||||| ||||||  |||||||||
Sbjct: 3052 tggaaggtctg--aagtcctatggtagctcggatgtaaat 3015

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>dbj|AP004698.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
           PAC clone:P0498E12
          Length = 153523

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                       
Query: 316 ttcgctgtcaaggcgaatccttttggtaccaacctcgtcagcagccggcaccctattctc 375
           |||||| ||||| |||||||| |||||||||||||| ||   |||||| ||||| |||||
Sbjct: 179 ttcgctctcaagacgaatcctcttggtaccaacctcatcgctagccggtaccctgttctc 120

                                               
Query: 376 ctttgcttccaccgagcacctcttgtaaggtttgaa 411
           ||| |||||||| |||||||||||||| ||||||||
Sbjct: 119 cttcgcttccactgagcacctcttgtatggtttgaa 84



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 84/100 (84%), Gaps = 3/100 (3%)
 Strand = Plus / Minus

                                                                       
Query: 143 gctgctcggcaagcattaacatacaacacataacaaattgagttctgtgaaacactgcat 202
           |||||| |||||||||||| |||||||||| || |||||||||| |||||   | |||||
Sbjct: 333 gctgcttggcaagcattaagatacaacacacaataaattgagtt-tgtgaggtaatgcat 275

                                                   
Query: 203 tgcaaggactggcaagtcctatagtagcttagatgtaaat 242
           || |||| |||  ||||||||| ||||||  |||||||||
Sbjct: 274 tggaaggtctg--aagtcctatggtagctcggatgtaaat 237

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>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0438H08
          Length = 148626

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                          
Query: 316    ttcgctgtcaaggcgaatccttttggtaccaacctcgtcagcagccggcaccctattctc 375
              |||||| ||||| |||||||| |||||||||||||| ||   |||||| ||||| |||||
Sbjct: 144327 ttcgctctcaagacgaatcctcttggtaccaacctcatcgctagccggtaccctgttctc 144268

                                                  
Query: 376    ctttgcttccaccgagcacctcttgtaaggtttgaa 411
              ||| |||||||| |||||||||||||| ||||||||
Sbjct: 144267 cttcgcttccactgagcacctcttgtatggtttgaa 144232



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 84/100 (84%), Gaps = 3/100 (3%)
 Strand = Plus / Minus

                                                                          
Query: 143    gctgctcggcaagcattaacatacaacacataacaaattgagttctgtgaaacactgcat 202
              |||||| |||||||||||| |||||||||| || |||||||||| |||||   | |||||
Sbjct: 144481 gctgcttggcaagcattaagatacaacacacaataaattgagtt-tgtgaggtaatgcat 144423

                                                      
Query: 203    tgcaaggactggcaagtcctatagtagcttagatgtaaat 242
              || |||| |||  ||||||||| ||||||  |||||||||
Sbjct: 144422 tggaaggtctg--aagtcctatggtagctcggatgtaaat 144385

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>dbj|AK104073.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-C12, full
           insert sequence
          Length = 1275

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 84/96 (87%)
 Strand = Plus / Minus

                                                                       
Query: 316 ttcgctgtcaaggcgaatccttttggtaccaacctcgtcagcagccggcaccctattctc 375
           |||||| ||||| |||||||| |||||||||||||| ||   |||||| ||||| |||||
Sbjct: 995 ttcgctctcaagacgaatcctcttggtaccaacctcatcgctagccggtaccctgttctc 936

                                               
Query: 376 ctttgcttccaccgagcacctcttgtaaggtttgaa 411
           ||| |||||||| |||||||||||||| ||||||||
Sbjct: 935 cttcgcttccactgagcacctcttgtatggtttgaa 900



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 84/100 (84%), Gaps = 3/100 (3%)
 Strand = Plus / Minus

                                                                        
Query: 143  gctgctcggcaagcattaacatacaacacataacaaattgagttctgtgaaacactgcat 202
            |||||| |||||||||||| |||||||||| || |||||||||| |||||   | |||||
Sbjct: 1149 gctgcttggcaagcattaagatacaacacacaataaattgagtt-tgtgaggtaatgcat 1091

                                                    
Query: 203  tgcaaggactggcaagtcctatagtagcttagatgtaaat 242
            || |||| |||  ||||||||| ||||||  |||||||||
Sbjct: 1090 tggaaggtctg--aagtcctatggtagctcggatgtaaat 1053

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>dbj|AB210845.1| Lemna paucicostata LpLHY H1 mRNA for LHY homologue1, complete cds
          Length = 2338

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 383  tccaccgagcacctcttgtaaggtttgaagcctgt 417
            ||||||||||||||||||||||| ||||| |||||
Sbjct: 2116 tccaccgagcacctcttgtaaggcttgaatcctgt 2082

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>gb|AC155718.4| Mus musculus 10 BAC RP24-217J7 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 155643

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 53    tccttcatcacagaaaaataa 73
             |||||||||||||||||||||
Sbjct: 60685 tccttcatcacagaaaaataa 60665

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>emb|AL441985.9| Human DNA sequence from clone RP11-417D4 on chromosome X Contains a
             pseudogene similar to part of ubiquitin-conjugating enzyme
             E2, complete sequence
          Length = 185969

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 56    ttcatcacagaaaaataagca 76
             |||||||||||||||||||||
Sbjct: 29355 ttcatcacagaaaaataagca 29375

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>emb|AL354861.11| Human DNA sequence from clone RP11-180I4 on chromosome 9 Contains an
              alpha type 7 proteasome subunit (PSMA7) pseudogene, the 3'
              end of a novel gene, a novel gene and a CpG island,
              complete sequence
          Length = 182653

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 67     aaaataagcagaattactttt 87
              |||||||||||||||||||||
Sbjct: 173675 aaaataagcagaattactttt 173695

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>emb|AJ459419.1|TRU459419 Takifugu rubripes cacng5 gene, prkca gene and putative LINE-like
             retrotransposon, cosmids C012B17 and C123B01
          Length = 64219

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 215   caagtcctatagtagcttagatgta 239
             ||||||||| |||||||||||||||
Sbjct: 15454 caagtcctacagtagcttagatgta 15478

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>emb|BX901901.6| Zebrafish DNA sequence from clone CH211-223B8 in linkage group 1,
              complete sequence
          Length = 172983

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 157    attaacatacaacacataacaaatt 181
              ||||||||| |||||||||||||||
Sbjct: 162761 attaacatataacacataacaaatt 162785

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>gb|AC104512.11| Drosophila melanogaster  BAC RP98-39C15 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 172654

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 59    atcacagaaaaataagcagaa 79
             |||||||||||||||||||||
Sbjct: 99077 atcacagaaaaataagcagaa 99057

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>gb|AE003442.3| Drosophila melanogaster chromosome X, section 26 of 74 of the complete
             sequence
          Length = 316794

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 59    atcacagaaaaataagcagaa 79
             |||||||||||||||||||||
Sbjct: 44595 atcacagaaaaataagcagaa 44615

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>gb|AC160545.8| Mus musculus chromosome 1, clone RP23-217K18, complete sequence
          Length = 240081

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 68     aaataagcagaattactttt 87
              ||||||||||||||||||||
Sbjct: 228630 aaataagcagaattactttt 228611

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>gb|AF499719.1| Thellungiella halophila putative selenium-binding protein mRNA,
           complete cds
          Length = 1509

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 336 ttttggtaccaacctcgtca 355
           ||||||||||||||||||||
Sbjct: 509 ttttggtaccaacctcgtca 528

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>gb|AC107846.4| Mus musculus chromosome 1, clone RP23-309I23, complete sequence
          Length = 178870

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    aaataagcagaattactttt 87
             ||||||||||||||||||||
Sbjct: 87930 aaataagcagaattactttt 87949

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>gb|AC163687.5| Mus musculus BAC clone RP23-3H13 from chromosome 17, complete sequence
          Length = 220643

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 63    cagaaaaataagcagaatta 82
             ||||||||||||||||||||
Sbjct: 56672 cagaaaaataagcagaatta 56653

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>gb|AC124834.1| Homo sapiens BAC clone RP11-542H16 from 7, complete sequence
          Length = 29244

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    aagcaaaattacaagtatta 52
             ||||||||||||||||||||
Sbjct: 28902 aagcaaaattacaagtatta 28883

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>emb|AL606803.10| Human DNA sequence from clone RP11-776H12 on chromosome 1 Contains the
             3' end of a novel gene, complete sequence
          Length = 54039

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    aaaataagcagaattacttt 86
             ||||||||||||||||||||
Sbjct: 39534 aaaataagcagaattacttt 39515

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>emb|AL590396.13| Human DNA sequence from clone RP11-193H5 on chromosome 1 Contains the
             3' end of a novel gene (LOC401987), a actin pseudogene, a
             cytochrome b (MTCYB) pseudogene, a NADH dehydrogenase 6
             (MTND6) pseudogene and a NADH dehydrogenase 5 (MTND5)
             pseudogene, complete sequence
          Length = 122108

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 75    cagaattacttttttaccaataaa 98
             |||||||||||||| |||||||||
Sbjct: 11891 cagaattactttttgaccaataaa 11914

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>emb|AL355611.11| Human DNA sequence from clone RP11-430K22 on chromosome 13 Contains a
             60S ribosomal protein L12 (RPL12) pseudogene and a
             pseudogene similar to part of ribosomal protein S3A
             (RPS3A)(FTE1), complete sequence
          Length = 176939

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    cagtaaaatgaagcaaaatt 42
             ||||||||||||||||||||
Sbjct: 94512 cagtaaaatgaagcaaaatt 94493

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>emb|AL121916.14|HSJ189G13 Human DNA sequence from clone RP1-189G13 on chromosome 20 Contains the
             RPL7AL2 gene for ribosomal protein L7a like 2 (pseudogene)
             and part of a ribosomal protein S4 pseudogene, complete
             sequence
          Length = 100167

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 202   ttgcaaggactggcaagtcc 221
             ||||||||||||||||||||
Sbjct: 24880 ttgcaaggactggcaagtcc 24899

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>gb|AC164638.4| Mus musculus BAC clone RP23-198N12 from chromosome 7, complete sequence
          Length = 242297

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 162   catacaacacataacaaatt 181
             ||||||||||||||||||||
Sbjct: 69968 catacaacacataacaaatt 69949

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>emb|AL132969.2|ATF8J2 Arabidopsis thaliana DNA chromosome 3, BAC clone F8J2
          Length = 99814

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 156   cattaacatacaacacataa 175
             ||||||||||||||||||||
Sbjct: 99133 cattaacatacaacacataa 99152

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>gb|AC023712.5| Drosophila melanogaster X BAC RP98-1M22 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 170129

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    taaaatgaagcaaaattaca 45
             ||||||||||||||||||||
Sbjct: 38319 taaaatgaagcaaaattaca 38338

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>gb|AC023692.5| Drosophila melanogaster X BAC RP98-15B10 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 163090

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    taaaatgaagcaaaattaca 45
             ||||||||||||||||||||
Sbjct: 12630 taaaatgaagcaaaattaca 12611

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>gb|AC016644.9| Homo sapiens chromosome 5 clone RP11-52M14, complete sequence
          Length = 157751

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     tgaagcaaaattacaagtat 50
              ||||||||||||||||||||
Sbjct: 106832 tgaagcaaaattacaagtat 106851

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>gb|AC010767.7| Homo sapiens chromosome 17, clone RP11-188K10, complete sequence
          Length = 184952

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 75     cagaattacttttttaccaataaa 98
              ||||| ||||||||||||||||||
Sbjct: 114652 cagaaatacttttttaccaataaa 114675

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>gb|AC015943.7| Homo sapiens chromosome 17, clone RP11-581B19, complete sequence
          Length = 161958

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 75     cagaattacttttttaccaataaa 98
              ||||| ||||||||||||||||||
Sbjct: 148287 cagaaatacttttttaccaataaa 148264

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>gb|AC073850.4| Homo sapiens BAC clone RP11-697H17 from 7, complete sequence
          Length = 183846

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 33   aagcaaaattacaagtatta 52
            ||||||||||||||||||||
Sbjct: 1658 aagcaaaattacaagtatta 1639

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>gb|AC008937.7| Homo sapiens chromosome 5 clone CTD-2310F14, complete sequence
          Length = 171480

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    tgaagcaaaattacaagtat 50
             ||||||||||||||||||||
Sbjct: 65766 tgaagcaaaattacaagtat 65785

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>emb|BX510996.12| Zebrafish DNA sequence from clone DKEYP-81E1 in linkage group 21,
              complete sequence
          Length = 197012

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     tcatcacagaaaaataagca 76
              ||||||||||||||||||||
Sbjct: 195229 tcatcacagaaaaataagca 195248

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>gb|AC147097.3| Pan troglodytes BAC clone RP43-51D4 from chromosome 7, complete
             sequence
          Length = 192069

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 33    aagcaaaattacaagtatta 52
             ||||||||||||||||||||
Sbjct: 29937 aagcaaaattacaagtatta 29918

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>gb|AC022464.4|AC022464 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I,
             complete sequence
          Length = 104830

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 48    tattatccttcatcacagaa 67
             ||||||||||||||||||||
Sbjct: 78745 tattatccttcatcacagaa 78726

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>gb|AC157819.5| Mus musculus chromosome 3, clone RP24-273H20, complete sequence
          Length = 151601

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   taccgcaatttcttgaaaat 261
             ||||||||||||||||||||
Sbjct: 13926 taccgcaatttcttgaaaat 13907

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>emb|Y12736.2|LLCPJW565 Lactococcus lactis subsp. cremoris plasmid pJW565 DNA, LlaBIIM,
            LlaBIIR genes and orfX
          Length = 12828

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 248  aatttcttgaaaatacacta 267
            ||||||||||||||||||||
Sbjct: 8201 aatttcttgaaaatacacta 8182

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>gb|AC154288.2| Mus musculus BAC clone RP23-447G10 from 17, complete sequence
          Length = 195195

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 63     cagaaaaataagcagaatta 82
              ||||||||||||||||||||
Sbjct: 135930 cagaaaaataagcagaatta 135911

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>gb|AE003433.3| Drosophila melanogaster chromosome X, section 17 of 74 of the complete
              sequence
          Length = 303602

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 26     taaaatgaagcaaaattaca 45
              ||||||||||||||||||||
Sbjct: 199020 taaaatgaagcaaaattaca 199039

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>gb|AC163725.4| Pan troglodytes BAC clone CH251-612A20 from chromosome unknown,
             complete sequence
          Length = 179999

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    tgaagcaaaattacaagtat 50
             ||||||||||||||||||||
Sbjct: 70304 tgaagcaaaattacaagtat 70323

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>emb|CR847844.6| Zebrafish DNA sequence from clone DKEY-181C13 in linkage group 10,
             complete sequence
          Length = 121598

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 40    attacaagtattatccttcatcac 63
             ||||||||||||||| ||||||||
Sbjct: 99699 attacaagtattatctttcatcac 99676

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>emb|CT009575.8| Mouse DNA sequence from clone RP23-107N17 on chromosome 17, complete
             sequence
          Length = 226188

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    cagaaaaataagcagaatta 82
             ||||||||||||||||||||
Sbjct: 44419 cagaaaaataagcagaatta 44438

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>gb|AC103937.16| Mus musculus chromosome 3, clone RP23-229C5, complete sequence
          Length = 179805

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 242   taccgcaatttcttgaaaat 261
             ||||||||||||||||||||
Sbjct: 87184 taccgcaatttcttgaaaat 87165


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,913,298
Number of Sequences: 3902068
Number of extensions: 3913298
Number of successful extensions: 77732
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77620
Number of HSP's gapped (non-prelim): 112
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result