ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DRP2B_ARATH (Q9LQ55) Dynamin-2B (EC 3.6.5.5) (Dynamin-related pr... 34 0.14
2DRP2A_ARATH (Q9SE83) Dynamin-2A (EC 3.6.5.5) (Dynamin-related pr... 33 0.41
3LACR_STAXY (O33813) Lactose operon transcription activator 31 1.6
4EXOC2_RAT (O54921) Exocyst complex component 2 (Exocyst complex ... 31 1.6
5EXOC2_MOUSE (Q9D4H1) Exocyst complex component 2 (Exocyst comple... 31 1.6
6YKR6_YEAST (P34239) Hypothetical 93.4 kDa protein in STE3-GIN10 ... 29 4.5
7YMER_STAAU (P08655) Hypothetical 19.7 kDa protein in mercuric re... 29 4.5

>DRP2B_ARATH (Q9LQ55) Dynamin-2B (EC 3.6.5.5) (Dynamin-related protein 2B)|
           (Dynamin-like protein 3)
          Length = 920

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 15/23 (65%), Positives = 19/23 (82%), Gaps = 1/23 (4%)
 Frame = -2

Query: 435 DANGANSGSRRT-PNRLPPAPPK 370
           D++G+   SRRT PNRLPPAPP+
Sbjct: 891 DSSGSGGSSRRTTPNRLPPAPPQ 913



to top

>DRP2A_ARATH (Q9SE83) Dynamin-2A (EC 3.6.5.5) (Dynamin-related protein 2A)|
           (Dynamin-like protein 6)
          Length = 914

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = -2

Query: 426 GANSGSRRTPNRLPPAPP 373
           G+ S  R TPNRLPPAPP
Sbjct: 889 GSGSNRRTTPNRLPPAPP 906



to top

>LACR_STAXY (O33813) Lactose operon transcription activator|
          Length = 279

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = +2

Query: 194 YITYIFL*TTEVLWIHT---IHAISRQLSILHPSLFSHQYHKGVRACHEKYDSHIA 352
           Y+TYI +     L IHT   I  ISRQ+    P LFS  + K       +Y  H +
Sbjct: 219 YLTYIRMYHASQLLIHTSTLISDISRQVGYKDPLLFSKNFTKHFEISASEYRHHFS 274



to top

>EXOC2_RAT (O54921) Exocyst complex component 2 (Exocyst complex component|
           Sec5) (rSec5)
          Length = 924

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
 Frame = -3

Query: 377 RRNTKDVDWQCENHIFHGMLSLPCDIDGKTDWDEE*RAGE---RSHEWCVSRGPQLFIEI 207
           +R  +  DW  +N    G+ SLPC  +       +   G    +  E  V + P+   E+
Sbjct: 599 KRLAEKEDWIVDNE---GLTSLPCQFEQSIVHSLQSLKGVVDCKPGEASVFQQPKTQEEV 655

Query: 206 CRLCMVIVTRSFYYIDQSDALSACEILLPHIS 111
           C+LC+ I+    Y ++Q       +I   H+S
Sbjct: 656 CQLCISIMQVFIYCLEQLSTKPDADIDTTHLS 687



to top

>EXOC2_MOUSE (Q9D4H1) Exocyst complex component 2 (Exocyst complex component|
           Sec5)
          Length = 924

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
 Frame = -3

Query: 377 RRNTKDVDWQCENHIFHGMLSLPCDIDGKTDWDEE*RAGE---RSHEWCVSRGPQLFIEI 207
           +R  +  DW  +N    G+ SLPC  +       +   G    +  E  V + P+   E+
Sbjct: 599 KRLAEKEDWVVDNE---GLTSLPCQFEQSIVHSLQSLKGVVDCKPGEASVFQQPKTQEEV 655

Query: 206 CRLCMVIVTRSFYYIDQSDALSACEILLPHIS 111
           C+LC+ I+    Y ++Q       +I   H+S
Sbjct: 656 CQLCINIMQVFIYCLEQLSTKPDADIDTTHLS 687



to top

>YKR6_YEAST (P34239) Hypothetical 93.4 kDa protein in STE3-GIN10 intergenic|
           region
          Length = 828

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
 Frame = -3

Query: 194 MVIVTRSFYYIDQSD--ALSAC--EILLPHIS*SW 102
           +V++TR FYY  Q +  A+S C   ILLP ++ SW
Sbjct: 187 LVLITRIFYYTHQYNRIAISLCIPRILLPVVAESW 221



to top

>YMER_STAAU (P08655) Hypothetical 19.7 kDa protein in mercuric resistance|
           operon
          Length = 180

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 9/30 (30%), Positives = 21/30 (70%)
 Frame = -3

Query: 440 NGTPMVPIQAADAHQIGCHLHRRNTKDVDW 351
           +G P+ P+ +AD+H +  +L + N+K +++
Sbjct: 39  DGLPLTPVASADSHVVASNLLKGNSKKIEY 68


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,393,451
Number of Sequences: 219361
Number of extensions: 1332238
Number of successful extensions: 3043
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3043
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top