ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39c07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_467690.1| Oryza sativa (japonica cultivar-group), mRNA 82 2e-12
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
3dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
4dbj|AK099699.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
5gb|BT016893.1| Zea mays clone Contig726 mRNA sequence 78 3e-11
6gb|AY103745.1| Zea mays PCO097601 mRNA sequence 70 7e-09
7gb|BT018372.1| Zea mays clone EL01N0306F02.d mRNA sequence 62 2e-06
8dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
9dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
10dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.096
11ref|NM_106101.2| Arabidopsis thaliana protein binding / ubiquiti... 44 0.38
12ref|NM_106102.3| Arabidopsis thaliana FUT3; fucosyltransferase/ ... 44 0.38
13gb|AY050433.1| Arabidopsis thaliana At1g74410/F1M20_9 mRNA, comp... 44 0.38
14gb|AC011765.6|AC011765 Arabidopsis thaliana chromosome 1 BAC F1M... 44 0.38
15gb|AY087335.1| Arabidopsis thaliana clone 34363 mRNA, complete s... 44 0.38
16gb|AE014841.1| Plasmodium falciparum 3D7 chromosome 11 section 6... 42 1.5
17emb|CR854834.11| Zebrafish DNA sequence from clone DKEYP-92B10 i... 42 1.5
18ref|XM_763163.1| Giardia lamblia ATCC 50803 hypothetical protein... 42 1.5
19gb|AC114967.2| Homo sapiens chromosome 5 clone RP11-301A5, compl... 42 1.5
20emb|BX649469.8| Zebrafish DNA sequence from clone DKEY-273O8 in ... 42 1.5
21gb|M86396.1|SCMEGFRA Schistosoma mansoni epidermal growth factor... 42 1.5
22gb|AC102410.5| Mus musculus chromosome 18, clone RP24-369O1, com... 40 5.9
23gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 5.9
24ref|XM_984295.1| PREDICTED: Mus musculus desmoglein 3 (Dsg3), mRNA 40 5.9
25gb|AF131215.2| Homo sapiens chromosome 8 map 8p23-p22 clone CTC-... 40 5.9
26gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome 40 5.9
27ref|NM_030596.1| Mus musculus desmoglein 3 (Dsg3), mRNA 40 5.9
28emb|AL627313.16| Human DNA sequence from clone RP11-492M19 on ch... 40 5.9
29gb|AC105108.4| Homo sapiens chromosome 8, clone CTD2-3179G6, com... 40 5.9
30gb|AF403184.1| Desulfitobacterium hafniense clone 3277 putative ... 40 5.9
31dbj|AK148657.1| Mus musculus 2 days neonate sympathetic ganglion... 40 5.9
32dbj|AK029018.1| Mus musculus 10 days neonate skin cDNA, RIKEN fu... 40 5.9
33gb|U86016.1|MMU86016 Mus musculus desmoglein 3 (DSG3) mRNA, part... 40 5.9
34dbj|AK037142.1| Mus musculus adult female vagina cDNA, RIKEN ful... 40 5.9
35gb|AC006991.3|AC006991 Homo sapiens BAC clone RP11-270H4 from Y,... 40 5.9
36gb|AC007322.4|AC007322 Homo sapiens BAC clone RP11-553C13 from Y... 40 5.9
37gb|AC008175.2|AC008175 Homo sapiens BAC clone RP11-427G18 from Y... 40 5.9
38gb|AC009947.2|AC009947 Homo sapiens BAC clone RP11-39P20 from Y,... 40 5.9
39ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 40 5.9
40gb|AC012089.13|AC012089 Homo sapiens 3 BAC RP11-758L3 (Roswell P... 40 5.9
41gb|AC009429.3|AC009429 Homo sapiens, clone RP11-45M17, complete ... 40 5.9
42gb|AC156624.1| Ornithorhynchus anatinus clone OA_Bb-193E18, comp... 40 5.9
43emb|AL929582.10| Zebrafish DNA sequence from clone CH211-117M12,... 40 5.9
44gb|AC132091.3| Mus musculus BAC clone RP24-465H15 from 18, compl... 40 5.9
45gb|U36616.1|HSYRRMC01 Human Y-chromosome RNA recognition motif p... 40 5.9
46gb|AC173486.2| Mus musculus BAC clone RP23-18O16 from chromosome... 40 5.9
47gb|AC168066.4| Mus musculus BAC clone RP23-134F19 from chromosom... 40 5.9 
>ref|XM_467690.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3215

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                        
Query: 206  atatttctataaacaactgaggtcctctggatacacaccattcatgc-gatctctcgcca 264
            |||||||||| |||||||||| |||||||||||||||||||||||||  |||||||| ||
Sbjct: 3037 atatttctatgaacaactgagatcctctggatacacaccattcatgcaaatctctcgtca 2978

                 
Query: 265  gctct 269
            |||||
Sbjct: 2977 gctct 2973



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 377  ggtgcaggtggcaaccgatttggtgtgcgtcggctgcc 414
            ||||| |||||||| || ||||||||||||||||||||
Sbjct: 2837 ggtgctggtggcaaacggtttggtgtgcgtcggctgcc 2800



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 81   ttacaacaacagagttcagaaccaagatcaactgatatgtggcaacaaaatctcaca 137
            |||||||| |||||| ||  |||||||||||| ||| ||||| ||||||||| ||||
Sbjct: 3171 ttacaacagcagagtacaagaccaagatcaaccgatctgtggtaacaaaatcccaca 3115
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                            
Query: 206      atatttctataaacaactgaggtcctctggatacacaccattcatgc-gatctctcgcca 264
                |||||||||| |||||||||| |||||||||||||||||||||||||  |||||||| ||
Sbjct: 30880346 atatttctatgaacaactgagatcctctggatacacaccattcatgcaaatctctcgtca 30880405

                     
Query: 265      gctct 269
                |||||
Sbjct: 30880406 gctct 30880410



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                      
Query: 377      ggtgcaggtggcaaccgatttggtgtgcgtcggctgcc 414
                ||||| |||||||| || ||||||||||||||||||||
Sbjct: 30880546 ggtgctggtggcaaacggtttggtgtgcgtcggctgcc 30880583



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                         
Query: 81       ttacaacaacagagttcagaaccaagatcaactgatatgtggcaacaaaatctcaca 137
                |||||||| |||||| ||  |||||||||||| ||| ||||| ||||||||| ||||
Sbjct: 30880212 ttacaacagcagagtacaagaccaagatcaaccgatctgtggtaacaaaatcccaca 30880268
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>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0684F11
          Length = 147731

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                         
Query: 206   atatttctataaacaactgaggtcctctggatacacaccattcatgc-gatctctcgcca 264
             |||||||||| |||||||||| |||||||||||||||||||||||||  |||||||| ||
Sbjct: 63923 atatttctatgaacaactgagatcctctggatacacaccattcatgcaaatctctcgtca 63982

                  
Query: 265   gctct 269
             |||||
Sbjct: 63983 gctct 63987



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 377   ggtgcaggtggcaaccgatttggtgtgcgtcggctgcc 414
             ||||| |||||||| || ||||||||||||||||||||
Sbjct: 64123 ggtgctggtggcaaacggtttggtgtgcgtcggctgcc 64160



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                      
Query: 81    ttacaacaacagagttcagaaccaagatcaactgatatgtggcaacaaaatctcaca 137
             |||||||| |||||| ||  |||||||||||| ||| ||||| ||||||||| ||||
Sbjct: 63789 ttacaacagcagagtacaagaccaagatcaaccgatctgtggtaacaaaatcccaca 63845
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>dbj|AK099699.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074K16, full
            insert sequence
          Length = 3215

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Minus

                                                                        
Query: 206  atatttctataaacaactgaggtcctctggatacacaccattcatgc-gatctctcgcca 264
            |||||||||| |||||||||| |||||||||||||||||||||||||  |||||||| ||
Sbjct: 3037 atatttctatgaacaactgagatcctctggatacacaccattcatgcaaatctctcgtca 2978

                 
Query: 265  gctct 269
            |||||
Sbjct: 2977 gctct 2973



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 377  ggtgcaggtggcaaccgatttggtgtgcgtcggctgcc 414
            ||||| |||||||| || ||||||||||||||||||||
Sbjct: 2837 ggtgctggtggcaaacggtttggtgtgcgtcggctgcc 2800



 Score = 50.1 bits (25), Expect = 0.006
 Identities = 49/57 (85%)
 Strand = Plus / Minus

                                                                     
Query: 81   ttacaacaacagagttcagaaccaagatcaactgatatgtggcaacaaaatctcaca 137
            |||||||| |||||| ||  |||||||||||| ||| ||||| ||||||||| ||||
Sbjct: 3171 ttacaacagcagagtacaagaccaagatcaaccgatctgtggtaacaaaatcccaca 3115
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>gb|BT016893.1| Zea mays clone Contig726 mRNA sequence
          Length = 858

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                       
Query: 364 ttagtatttcggcggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggc 423
           ||||||||| |||||||| ||||||||||| ||||||||||| |||||||| || |||||
Sbjct: 212 ttagtattttggcggtgctggtggcaaccggtttggtgtgcgccggctgccagagttggc 271

              
Query: 424 acc 426
           |||
Sbjct: 272 acc 274
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>gb|AY103745.1| Zea mays PCO097601 mRNA sequence
          Length = 1567

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                        
Query: 364  ttagtatttcggcggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggc 423
            ||||||||| |||||||| ||||||||||| || |||||||| |||||||| || |||||
Sbjct: 1316 ttagtattttggcggtgctggtggcaaccggttcggtgtgcgccggctgccagagttggc 1257

               
Query: 424  acc 426
            |||
Sbjct: 1256 acc 1254



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 200  acctacatatttctataaacaact 223
            ||||| ||||||||||||||||||
Sbjct: 1509 acctatatatttctataaacaact 1486
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>gb|BT018372.1| Zea mays clone EL01N0306F02.d mRNA sequence
          Length = 1254

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                        
Query: 364  ttagtatttcggcggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggc 423
            ||||||||| ||||| || ||||||||||| || |||||||| |||||||| || |||||
Sbjct: 1079 ttagtattttggcggggctggtggcaaccggttcggtgtgcgccggctgccagagttggc 1020

               
Query: 424  acc 426
            |||
Sbjct: 1019 acc 1017
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                           
Query: 364     ttagtatttcggcggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggc 423
               ||||||||| || ||||| || || ||||| ||||| |||||||||||||| || |||||
Sbjct: 7680453 ttagtatttaggaggtgctggaggtaaccggtttggagtgcgtcggctgccggagttggc 7680394

                  
Query: 424     acc 426
               |||
Sbjct: 7680393 acc 7680391
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>dbj|AP004027.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OJ1136_C11
          Length = 124827

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 54/63 (85%)
 Strand = Plus / Minus

                                                                          
Query: 364    ttagtatttcggcggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggc 423
              ||||||||| || ||||| || || ||||| ||||| |||||||||||||| || |||||
Sbjct: 103708 ttagtatttaggaggtgctggaggtaaccggtttggagtgcgtcggctgccggagttggc 103649

                 
Query: 424    acc 426
              |||
Sbjct: 103648 acc 103646
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>dbj|AK102187.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033086P03, full
            insert sequence
          Length = 3307

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 53/63 (84%)
 Strand = Plus / Minus

                                                                        
Query: 364  ttagtatttcggcggtgcaggtggcaaccgatttggtgtgcgtcggctgcctgaattggc 423
            ||||||||| || ||||| || || ||||| ||||| || ||||||||||| || |||||
Sbjct: 2949 ttagtatttaggaggtgctggaggtaaccggtttggagtacgtcggctgccggagttggc 2890

               
Query: 424  acc 426
            |||
Sbjct: 2889 acc 2887
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>ref|NM_106101.2| Arabidopsis thaliana protein binding / ubiquitin-protein ligase/
           zinc ion binding AT1G74410 mRNA, complete cds
          Length = 1062

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 70  agacttacaagttacaacaaca 91
           ||||||||||||||||||||||
Sbjct: 914 agacttacaagttacaacaaca 893
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>ref|NM_106102.3| Arabidopsis thaliana FUT3; fucosyltransferase/ transferase,
            transferring glycosyl groups AT1G74420 (FUT3) transcript
            variant AT1G74420.1 mRNA, complete cds
          Length = 2114

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 70   agacttacaagttacaacaaca 91
            ||||||||||||||||||||||
Sbjct: 1913 agacttacaagttacaacaaca 1934
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>gb|AY050433.1| Arabidopsis thaliana At1g74410/F1M20_9 mRNA, complete cds
          Length = 1061

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 70  agacttacaagttacaacaaca 91
           ||||||||||||||||||||||
Sbjct: 912 agacttacaagttacaacaaca 891
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>gb|AC011765.6|AC011765 Arabidopsis thaliana chromosome 1 BAC F1M20 genomic sequence, complete
             sequence
          Length = 134402

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 70    agacttacaagttacaacaaca 91
             ||||||||||||||||||||||
Sbjct: 24074 agacttacaagttacaacaaca 24053
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>gb|AY087335.1| Arabidopsis thaliana clone 34363 mRNA, complete sequence
          Length = 1036

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 70  agacttacaagttacaacaaca 91
           ||||||||||||||||||||||
Sbjct: 914 agacttacaagttacaacaaca 893
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>gb|AE014841.1| Plasmodium falciparum 3D7 chromosome 11 section 6 of 8 of the complete
              sequence
          Length = 252420

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 19     aggaatataatacaccaatgg 39
              |||||||||||||||||||||
Sbjct: 148264 aggaatataatacaccaatgg 148284
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>emb|CR854834.11| Zebrafish DNA sequence from clone DKEYP-92B10 in linkage group 11,
             complete sequence
          Length = 140484

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 322   atgccatgaaaaatatgattc 342
             |||||||||||||||||||||
Sbjct: 40570 atgccatgaaaaatatgattc 40590
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>ref|XM_763163.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_127_27159_25633) partial mRNA
          Length = 1527

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 77  caagttacaacaacagagttcagaa 101
           |||||||||| ||||||||||||||
Sbjct: 969 caagttacaagaacagagttcagaa 993
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>gb|AC114967.2| Homo sapiens chromosome 5 clone RP11-301A5, complete sequence
          Length = 215308

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 157   tgatcaatatagtaaaatgat 177
             |||||||||||||||||||||
Sbjct: 83518 tgatcaatatagtaaaatgat 83498
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>emb|BX649469.8| Zebrafish DNA sequence from clone DKEY-273O8 in linkage group 7,
             complete sequence
          Length = 80705

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 273   ttcttcatcccagtctgtttt 293
             |||||||||||||||||||||
Sbjct: 15968 ttcttcatcccagtctgtttt 15948
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>gb|M86396.1|SCMEGFRA Schistosoma mansoni epidermal growth factor receptor (SER, class 1
            product) mRNA, complete cds
          Length = 6051

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 321  catgccatgaaaaatatgatt 341
            |||||||||||||||||||||
Sbjct: 2823 catgccatgaaaaatatgatt 2803
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>gb|AC102410.5| Mus musculus chromosome 18, clone RP24-369O1, complete sequence
          Length = 164142

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 271    tattcttcatcccagtctgt 290
              ||||||||||||||||||||
Sbjct: 153695 tattcttcatcccagtctgt 153676
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>gb|AE017348.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 8, complete
              sequence
          Length = 1194300

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     aagaatggaaggaatataat 29
              ||||||||||||||||||||
Sbjct: 923427 aagaatggaaggaatataat 923446
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>ref|XM_984295.1| PREDICTED: Mus musculus desmoglein 3 (Dsg3), mRNA
          Length = 2830

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 tattcttcatcccagtctgt 290
           ||||||||||||||||||||
Sbjct: 988 tattcttcatcccagtctgt 969
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>gb|AF131215.2| Homo sapiens chromosome 8 map 8p23-p22 clone CTC-306G11, complete
             sequence; and clones CTC-493P15, CTB-91N18, CTC-164D9,
             partial sequence
          Length = 186607

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 134   cacaggccgagagagcatca 153
             ||||||||||||||||||||
Sbjct: 11593 cacaggccgagagagcatca 11612
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>gb|CP000323.1| Psychrobacter cryohalolentis K5, complete genome
          Length = 3059876

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 409    gctgcctgaattggcaccattggc 432
              |||||||| |||||||||||||||
Sbjct: 465022 gctgcctgtattggcaccattggc 465045
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>ref|NM_030596.1| Mus musculus desmoglein 3 (Dsg3), mRNA
          Length = 3578

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 tattcttcatcccagtctgt 290
           ||||||||||||||||||||
Sbjct: 992 tattcttcatcccagtctgt 973
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>emb|AL627313.16| Human DNA sequence from clone RP11-492M19 on chromosome 1 Contains a
              novel pseudogene (LOC151871), a novel gene similar to
              ribosomal protein S6 kinase, 90kDa, polypeptide 1
              (RPS6KA1), a chromosome 20 open reading frame 52 (C20orf52)
              pseudogene and two CpG islands, complete sequence
          Length = 128342

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 317    agagcatgccatgaaaaata 336
              ||||||||||||||||||||
Sbjct: 119310 agagcatgccatgaaaaata 119291
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>gb|AC105108.4| Homo sapiens chromosome 8, clone CTD2-3179G6, complete sequence
          Length = 141073

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    cacaggccgagagagcatca 153
              ||||||||||||||||||||
Sbjct: 116902 cacaggccgagagagcatca 116921
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>gb|AF403184.1| Desulfitobacterium hafniense clone 3277 putative uroporphyrinogen
           III synthase/methyltransferase, membrane docking
           protein, reductive dehalogenase, putative membrane
           docking protein, putative reductive dehalogenase,
           putative transcription regulator, putative GroEL-type
           chaperonin, putative membrane-bound regulatory protein,
           and putative GroEL-type chaperonin genes, complete cds;
           and unknown genes
          Length = 27716

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 308 aagggagtgagagcatgcca 327
           ||||||||||||||||||||
Sbjct: 684 aagggagtgagagcatgcca 703
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>dbj|AK148657.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
           full-length enriched library, clone:7120431F07
           product:desmoglein 3, full insert sequence
          Length = 4109

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 tattcttcatcccagtctgt 290
           ||||||||||||||||||||
Sbjct: 962 tattcttcatcccagtctgt 943
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>dbj|AK029018.1| Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched
           library, clone:4732482D04 product:desmoglein 3, full
           insert sequence
          Length = 3483

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 tattcttcatcccagtctgt 290
           ||||||||||||||||||||
Sbjct: 983 tattcttcatcccagtctgt 964
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>gb|U86016.1|MMU86016 Mus musculus desmoglein 3 (DSG3) mRNA, partial cds
          Length = 2979

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 tattcttcatcccagtctgt 290
           ||||||||||||||||||||
Sbjct: 890 tattcttcatcccagtctgt 871
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>dbj|AK037142.1| Mus musculus adult female vagina cDNA, RIKEN full-length enriched
           library, clone:9930125N18 product:desmoglein 3, full
           insert sequence
          Length = 3578

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 271 tattcttcatcccagtctgt 290
           ||||||||||||||||||||
Sbjct: 992 tattcttcatcccagtctgt 973
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>gb|AC006991.3|AC006991 Homo sapiens BAC clone RP11-270H4 from Y, complete sequence
          Length = 173242

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   catacataacctacatattt 211
             ||||||||||||||||||||
Sbjct: 54222 catacataacctacatattt 54203
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>gb|AC007322.4|AC007322 Homo sapiens BAC clone RP11-553C13 from Y, complete sequence
          Length = 184215

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   catacataacctacatattt 211
             ||||||||||||||||||||
Sbjct: 88857 catacataacctacatattt 88876
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>gb|AC008175.2|AC008175 Homo sapiens BAC clone RP11-427G18 from Y, complete sequence
          Length = 205237

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    catacataacctacatattt 211
              ||||||||||||||||||||
Sbjct: 199476 catacataacctacatattt 199457
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>gb|AC009947.2|AC009947 Homo sapiens BAC clone RP11-39P20 from Y, complete sequence
          Length = 149230

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    catacataacctacatattt 211
              ||||||||||||||||||||
Sbjct: 110799 catacataacctacatattt 110818
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>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 192     catacataacctacatattt 211
               ||||||||||||||||||||
Sbjct: 4313000 catacataacctacatattt 4312981



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 192     catacataacctacatattt 211
               ||||||||||||||||||||
Sbjct: 1735844 catacataacctacatattt 1735863



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    catacataacctacatattt 211
              ||||||||||||||||||||
Sbjct: 838571 catacataacctacatattt 838552



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    catacataacctacatattt 211
              ||||||||||||||||||||
Sbjct: 126052 catacataacctacatattt 126071
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>gb|AC012089.13|AC012089 Homo sapiens 3 BAC RP11-758L3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 150429

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 53    attgcaagtttgatggaaga 72
             ||||||||||||||||||||
Sbjct: 22666 attgcaagtttgatggaaga 22647
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>gb|AC009429.3|AC009429 Homo sapiens, clone RP11-45M17, complete sequence
          Length = 160417

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 53     attgcaagtttgatggaaga 72
              ||||||||||||||||||||
Sbjct: 129797 attgcaagtttgatggaaga 129778
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>gb|AC156624.1| Ornithorhynchus anatinus clone OA_Bb-193E18, complete sequence
          Length = 162554

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   catacataacctacatattt 211
             ||||||||||||||||||||
Sbjct: 26113 catacataacctacatattt 26094
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>emb|AL929582.10| Zebrafish DNA sequence from clone CH211-117M12, complete sequence
          Length = 175577

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 7      aaaaagaatggaaggaatataata 30
              |||||||||| |||||||||||||
Sbjct: 117289 aaaaagaatgaaaggaatataata 117266
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>gb|AC132091.3| Mus musculus BAC clone RP24-465H15 from 18, complete sequence
          Length = 140256

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 271  tattcttcatcccagtctgt 290
            ||||||||||||||||||||
Sbjct: 1619 tattcttcatcccagtctgt 1600
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>gb|U36616.1|HSYRRMC01 Human Y-chromosome RNA recognition motif protein (YRRM) gene, exon
           2, subclone 7S2
          Length = 418

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 192 catacataacctacatattt 211
           ||||||||||||||||||||
Sbjct: 321 catacataacctacatattt 302
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>gb|AC173486.2| Mus musculus BAC clone RP23-18O16 from chromosome 16, complete sequence
          Length = 208322

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   tggcaacaaaatctcacagg 139
             ||||||||||||||||||||
Sbjct: 71162 tggcaacaaaatctcacagg 71143
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>gb|AC168066.4| Mus musculus BAC clone RP23-134F19 from chromosome 16, complete
             sequence
          Length = 198238

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 120   tggcaacaaaatctcacagg 139
             ||||||||||||||||||||
Sbjct: 82449 tggcaacaaaatctcacagg 82468


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,350,177
Number of Sequences: 3902068
Number of extensions: 4350177
Number of successful extensions: 100414
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100205
Number of HSP's gapped (non-prelim): 209
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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