ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39c04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_481609.1| Oryza sativa (japonica cultivar-group), mRNA 72 2e-09
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
3dbj|AP005493.3| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
4dbj|AK060470.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
5ref|NM_189287.1| Oryza sativa (japonica cultivar-group), predic... 58 3e-05
6dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
7dbj|AP002871.2| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
8gb|AY107758.1| Zea mays PCO143163 mRNA sequence 52 0.002
9gb|AC091755.3| Sus scrofa clone RP44-123F10, complete sequence 46 0.095
10emb|AL137004.7| Human DNA sequence from clone RP1-216A11 on chro... 42 1.5
11gb|AC005623.3| Arabidopsis thaliana chromosome 2 clone T20P8 map... 42 1.5
12ref|XM_221540.2| PREDICTED: Rattus norvegicus similar to RIKEN c... 42 1.5
13gb|AE000512.1| Thermotoga maritima MSB8, complete genome 42 1.5
14gb|DQ240224.1| Avicennia germinans clone Agerm_GA_002 microsatel... 40 5.9
15ref|NM_004745.3| Homo sapiens discs, large (Drosophila) homolog-... 40 5.9
16gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 5.9
17ref|NM_013860.1| Mus musculus LIM domains containing 1 (Limd1), ... 40 5.9
18gb|AC125254.9| Mus musculus chromosome 9, clone RP24-156I15, com... 40 5.9
19ref|XM_567148.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 5.9
20gb|AC126333.7| Homo sapiens chromosome 8, clone RP11-666I19, com... 40 5.9
21gb|AC018816.6| Homo sapiens chromosome 3 clone RP11-250A15 map 3... 40 5.9
22gb|AC127382.4| Homo sapiens BAC clone RP11-1380M11 from UL, comp... 40 5.9
23emb|AL606535.11| Human DNA sequence from clone RP11-438I12 on ch... 40 5.9
24emb|AL512508.8| Human DNA sequence from clone RP11-364E8 on chro... 40 5.9
25gb|AF188030.5| Homo sapiens chromosome 8 clone RP4-593A12 map p2... 40 5.9
26emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P... 40 5.9
27gb|AC159208.2| Mus musculus BAC clone RP23-152K15 from chromosom... 40 5.9
28gb|AC093200.4| Homo sapiens chromosome 8 clone CTD-2336o2 map p2... 40 5.9
29emb|AL645587.9| Mouse DNA sequence from clone RP23-171O15 on chr... 40 5.9
30emb|AJ132409.1|MMU132409 Mus musculus mRNA for LIM domains conta... 40 5.9
31gb|AC102677.9| Mus musculus chromosome 5, clone RP24-67M11, comp... 40 5.9
32gb|AF119818.1| Homo sapiens discs, large (Drosophila) homolog-as... 40 5.9
33gb|AF119817.1| Homo sapiens discs, large (Drosophila) homolog-as... 40 5.9
34emb|BX276081.12| Zebrafish DNA sequence from clone CH211-270G19 ... 40 5.9
35dbj|AK047198.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 5.9
36gb|AC018501.9| Homo sapiens chromosome 3 clone RP11-283K15 map 3... 40 5.9
37dbj|AK083970.1| Mus musculus 12 days embryo spinal ganglion cDNA... 40 5.9
38gb|AF214636.4| Homo sapiens chromosome 8 clone RP4-605G11 map p2... 40 5.9
39gb|AC100810.18| Homo sapiens chromosome 8, clone CTD-2336O2, com... 40 5.9
40gb|AC115625.3| Homo sapiens BAC clone RP11-588E23 from 2, comple... 40 5.9
41gb|AC024157.4|AC024157 Homo sapiens chromosome 3 clone RP11-233P... 40 5.9
42gb|AC015541.21|AC015541 Homo sapiens 3 BAC RP11-106B10 (Roswell ... 40 5.9
43ref|XM_236734.3| PREDICTED: Rattus norvegicus LIM domains contai... 40 5.9
44gb|AC026162.5|AC026162 Homo sapiens chromosome 3 clone RP11-106B... 40 5.9
45gb|AC127287.4| Mus musculus BAC clone RP23-345G7 from chromosome... 40 5.9
46emb|AL672034.5| Mouse DNA sequence from clone RP23-461P10 on chr... 40 5.9
47gb|AF225898.1|AF225898 Homo sapiens BAC clone 13d21, complete se... 40 5.9
48gb|BC056449.1| Mus musculus LIM domains containing 1, mRNA (cDNA... 40 5.9
49dbj|AP006635.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 5.9 
>ref|XM_481609.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2970

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                                
Query: 402  aatgtgacaacatctcttctgtatcccctaactatc 437
            ||||||||||||||||||||||||||||||||||||
Sbjct: 2960 aatgtgacaacatctcttctgtatcccctaactatc 2925
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                                    
Query: 402      aatgtgacaacatctcttctgtatcccctaactatc 437
                ||||||||||||||||||||||||||||||||||||
Sbjct: 14179399 aatgtgacaacatctcttctgtatcccctaactatc 14179434
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>dbj|AP005493.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0078D03
          Length = 176593

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                                 
Query: 402   aatgtgacaacatctcttctgtatcccctaactatc 437
             ||||||||||||||||||||||||||||||||||||
Sbjct: 83688 aatgtgacaacatctcttctgtatcccctaactatc 83723
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>dbj|AK060470.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-E02, full
           insert sequence
          Length = 1383

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 36/36 (100%)
 Strand = Plus / Minus

                                               
Query: 402 aatgtgacaacatctcttctgtatcccctaactatc 437
           ||||||||||||||||||||||||||||||||||||
Sbjct: 913 aatgtgacaacatctcttctgtatcccctaactatc 878
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>ref|NM_189287.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3813

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Minus

                                             
Query: 405  gtgacaacatctcttctgtatcccctaactatc 437
            ||||| |||||||||||||||||||||||||||
Sbjct: 3800 gtgacgacatctcttctgtatcccctaactatc 3768
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                                 
Query: 405      gtgacaacatctcttctgtatcccctaactatc 437
                ||||| |||||||||||||||||||||||||||
Sbjct: 11252233 gtgacgacatctcttctgtatcccctaactatc 11252265
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>dbj|AP002871.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0475H04
          Length = 143337

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                              
Query: 405   gtgacaacatctcttctgtatcccctaactatc 437
             ||||| |||||||||||||||||||||||||||
Sbjct: 39638 gtgacgacatctcttctgtatcccctaactatc 39670
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>gb|AY107758.1| Zea mays PCO143163 mRNA sequence
          Length = 1380

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 399 aaaaatgtgacaacatctcttctgtatcccctaactat 436
           ||||||||||||||||||||  | ||||||||||||||
Sbjct: 967 aaaaatgtgacaacatctctcgtatatcccctaactat 930
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>gb|AC091755.3| Sus scrofa clone RP44-123F10, complete sequence
          Length = 207865

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 287    aaggtgagggcttccaacttcag 309
              |||||||||||||||||||||||
Sbjct: 177138 aaggtgagggcttccaacttcag 177116
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>emb|AL137004.7| Human DNA sequence from clone RP1-216A11 on chromosome 6, complete
             sequence
          Length = 52994

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 81    agaaaatagcaaaaacaggga 101
             |||||||||||||||||||||
Sbjct: 28514 agaaaatagcaaaaacaggga 28494
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>gb|AC005623.3| Arabidopsis thaliana chromosome 2 clone T20P8 map B68, complete
             sequence
          Length = 99345

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 386   atttgatcaagtaaaaaatgt 406
             |||||||||||||||||||||
Sbjct: 49442 atttgatcaagtaaaaaatgt 49462
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>ref|XM_221540.2| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810403B08
            (predicted) (LOC304007), mRNA
          Length = 2538

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 145  agaattgatttggagaacagg 165
            |||||||||||||||||||||
Sbjct: 1041 agaattgatttggagaacagg 1021
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>gb|AE000512.1| Thermotoga maritima MSB8, complete genome
          Length = 1860725

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 77      tcacagaaaatagcaaaaaca 97
               |||||||||||||||||||||
Sbjct: 1080264 tcacagaaaatagcaaaaaca 1080284
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>gb|DQ240224.1| Avicennia germinans clone Agerm_GA_002 microsatellite sequence
          Length = 692

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 aattgatttggagaacaggg 166
           ||||||||||||||||||||
Sbjct: 430 aattgatttggagaacaggg 411
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>ref|NM_004745.3| Homo sapiens discs, large (Drosophila) homolog-associated protein 2
            (DLGAP2), mRNA
          Length = 10101

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 136  gaagtttctagaattgatttggag 159
            ||||||| ||||||||||||||||
Sbjct: 6322 gaagtttttagaattgatttggag 6299
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>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
               sequence
          Length = 2300533

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 24      cattggtattgctccttcca 43
               ||||||||||||||||||||
Sbjct: 1393107 cattggtattgctccttcca 1393126



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 281    gccgtcaaggtgagggcttc 300
              ||||||||||||||||||||
Sbjct: 562568 gccgtcaaggtgagggcttc 562587
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>ref|NM_013860.1| Mus musculus LIM domains containing 1 (Limd1), mRNA
          Length = 4806

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  ggtgagggcttccaacttca 308
            ||||||||||||||||||||
Sbjct: 1861 ggtgagggcttccaacttca 1842
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>gb|AC125254.9| Mus musculus chromosome 9, clone RP24-156I15, complete sequence
          Length = 161503

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 289    ggtgagggcttccaacttca 308
              ||||||||||||||||||||
Sbjct: 126185 ggtgagggcttccaacttca 126166
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>ref|XM_567148.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNA02120) partial mRNA
          Length = 1590

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 281 gccgtcaaggtgagggcttc 300
           ||||||||||||||||||||
Sbjct: 934 gccgtcaaggtgagggcttc 915
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>gb|AC126333.7| Homo sapiens chromosome 8, clone RP11-666I19, complete sequence
          Length = 127374

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 136  gaagtttctagaattgatttggag 159
            ||||||| ||||||||||||||||
Sbjct: 4730 gaagtttttagaattgatttggag 4753
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>gb|AC018816.6| Homo sapiens chromosome 3 clone RP11-250A15 map 3p, complete sequence
          Length = 168629

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   atctgcacacatctgtgtat 336
             ||||||||||||||||||||
Sbjct: 97270 atctgcacacatctgtgtat 97251
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>gb|AC127382.4| Homo sapiens BAC clone RP11-1380M11 from UL, complete sequence
          Length = 179507

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 317    atctgcacacatctgtgtat 336
              ||||||||||||||||||||
Sbjct: 163081 atctgcacacatctgtgtat 163062
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>emb|AL606535.11| Human DNA sequence from clone RP11-438I12 on chromosome 1 Contains a
             keratin 8 (KRT8) pseudogene, complete sequence
          Length = 119814

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    cacagaaaatagcaaaaaca 97
             ||||||||||||||||||||
Sbjct: 56144 cacagaaaatagcaaaaaca 56125
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>emb|AL512508.8| Human DNA sequence from clone RP11-364E8 on chromosome 10, complete
             sequence
          Length = 74524

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    aatcacagaaaatagcaaaaacag 98
             |||||||||||| |||||||||||
Sbjct: 38796 aatcacagaaaagagcaaaaacag 38773
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>gb|AF188030.5| Homo sapiens chromosome 8 clone RP4-593A12 map p23, complete sequence
          Length = 151329

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 136    gaagtttctagaattgatttggag 159
              ||||||| ||||||||||||||||
Sbjct: 111301 gaagtttttagaattgatttggag 111278
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>emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P3 on chromosome 10 Contains a
              novel gene, the 5' end of the TCF8 gene for transcription
              factor 8 (represses interleukin 2 expression)
              (BZP,ZEB,ZEB1,AREB6,ZFHEP,NIL-2A,ZFHX1A,NIL-2-A), a
              pseudogene similar to part of serine palmitoyltransferase,
              long chain base subunit 1 (SPTLC1) (HSAN, HSN1, LBC1, LCB1,
              SPT1, SPTI) and two CpG islands, complete sequence
          Length = 187517

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    agaattgatttggagaacag 164
              ||||||||||||||||||||
Sbjct: 135172 agaattgatttggagaacag 135153
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>gb|AC159208.2| Mus musculus BAC clone RP23-152K15 from chromosome 13, complete sequence
          Length = 195714

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     aaatcacagaaaatagcaaa 93
              ||||||||||||||||||||
Sbjct: 109058 aaatcacagaaaatagcaaa 109039
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>gb|AC093200.4| Homo sapiens chromosome 8 clone CTD-2336o2 map p23, complete sequence
          Length = 114816

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 136  gaagtttctagaattgatttggag 159
            ||||||| ||||||||||||||||
Sbjct: 2718 gaagtttttagaattgatttggag 2695
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>emb|AL645587.9| Mouse DNA sequence from clone RP23-171O15 on chromosome 13 Contains
             part of a novel gene, complete sequence
          Length = 150986

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   gacactgttgctactgtttc 119
             ||||||||||||||||||||
Sbjct: 29336 gacactgttgctactgtttc 29317
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>emb|AJ132409.1|MMU132409 Mus musculus mRNA for LIM domains containing protein 1
          Length = 4806

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  ggtgagggcttccaacttca 308
            ||||||||||||||||||||
Sbjct: 1861 ggtgagggcttccaacttca 1842
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>gb|AC102677.9| Mus musculus chromosome 5, clone RP24-67M11, complete sequence
          Length = 167898

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   aagtttctagaattgatttg 156
             ||||||||||||||||||||
Sbjct: 34580 aagtttctagaattgatttg 34599
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>gb|AF119818.1| Homo sapiens discs, large (Drosophila) homolog-associated protein 2
            (DLGAP2) mRNA, alternatively spliced, partial cds
          Length = 10141

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 136  gaagtttctagaattgatttggag 159
            ||||||| ||||||||||||||||
Sbjct: 6362 gaagtttttagaattgatttggag 6339
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>gb|AF119817.1| Homo sapiens discs, large (Drosophila) homolog-associated protein 2
            (DLGAP2) mRNA, alternatively spliced, complete cds
          Length = 10126

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 136  gaagtttctagaattgatttggag 159
            ||||||| ||||||||||||||||
Sbjct: 6347 gaagtttttagaattgatttggag 6324
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>emb|BX276081.12| Zebrafish DNA sequence from clone CH211-270G19 in linkage group 10,
             complete sequence
          Length = 130240

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 400   aaaatgtgacaacatctcttctgt 423
             ||||| ||||||||||||||||||
Sbjct: 10606 aaaatttgacaacatctcttctgt 10583
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>dbj|AK047198.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:B930034P16 product:LIM domains
            containing 1, full insert sequence
          Length = 3991

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  ggtgagggcttccaacttca 308
            ||||||||||||||||||||
Sbjct: 1866 ggtgagggcttccaacttca 1847
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>gb|AC018501.9| Homo sapiens chromosome 3 clone RP11-283K15 map 3p, complete sequence
          Length = 202070

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 317    atctgcacacatctgtgtat 336
              ||||||||||||||||||||
Sbjct: 158053 atctgcacacatctgtgtat 158034
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>dbj|AK083970.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130070L13 product:LIM DOMAINS
            CONTAINING PROTEIN 1 homolog [Mus musculus], full insert
            sequence
          Length = 2991

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  ggtgagggcttccaacttca 308
            ||||||||||||||||||||
Sbjct: 1834 ggtgagggcttccaacttca 1815
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>gb|AF214636.4| Homo sapiens chromosome 8 clone RP4-605G11 map p23, complete sequence
          Length = 95741

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 136   gaagtttctagaattgatttggag 159
             ||||||| ||||||||||||||||
Sbjct: 29585 gaagtttttagaattgatttggag 29562
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>gb|AC100810.18| Homo sapiens chromosome 8, clone CTD-2336O2, complete sequence
          Length = 114639

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 136    gaagtttctagaattgatttggag 159
              ||||||| ||||||||||||||||
Sbjct: 111921 gaagtttttagaattgatttggag 111944
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>gb|AC115625.3| Homo sapiens BAC clone RP11-588E23 from 2, complete sequence
          Length = 163505

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 336   ttcattctgctacaatggca 355
             ||||||||||||||||||||
Sbjct: 19896 ttcattctgctacaatggca 19877
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>gb|AC024157.4|AC024157 Homo sapiens chromosome 3 clone RP11-233P1 map 3p, complete sequence
          Length = 160667

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 317    atctgcacacatctgtgtat 336
              ||||||||||||||||||||
Sbjct: 148507 atctgcacacatctgtgtat 148526
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>gb|AC015541.21|AC015541 Homo sapiens 3 BAC RP11-106B10 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 164516

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   atctgcacacatctgtgtat 336
             ||||||||||||||||||||
Sbjct: 93775 atctgcacacatctgtgtat 93794
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>ref|XM_236734.3| PREDICTED: Rattus norvegicus LIM domains containing 1 (predicted)
            (Limd1_predicted), mRNA
          Length = 2403

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  ggtgagggcttccaacttca 308
            ||||||||||||||||||||
Sbjct: 1320 ggtgagggcttccaacttca 1301
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>gb|AC026162.5|AC026162 Homo sapiens chromosome 3 clone RP11-106B10 map 3p, complete sequence
          Length = 164557

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   atctgcacacatctgtgtat 336
             ||||||||||||||||||||
Sbjct: 70774 atctgcacacatctgtgtat 70755
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>gb|AC127287.4| Mus musculus BAC clone RP23-345G7 from chromosome 7, complete sequence
          Length = 209901

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 291   tgagggcttccaacttcagc 310
             ||||||||||||||||||||
Sbjct: 43818 tgagggcttccaacttcagc 43837
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>emb|AL672034.5| Mouse DNA sequence from clone RP23-461P10 on chromosome X, complete
              sequence
          Length = 199101

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    aaaaggaatgaagatctatg 229
              ||||||||||||||||||||
Sbjct: 134434 aaaaggaatgaagatctatg 134415
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>gb|AF225898.1|AF225898 Homo sapiens BAC clone 13d21, complete sequence
          Length = 198084

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   agaattgatttggagaacag 164
             ||||||||||||||||||||
Sbjct: 17585 agaattgatttggagaacag 17566
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>gb|BC056449.1| Mus musculus LIM domains containing 1, mRNA (cDNA clone MGC:66994
            IMAGE:5703026), complete cds
          Length = 3924

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  ggtgagggcttccaacttca 308
            ||||||||||||||||||||
Sbjct: 1747 ggtgagggcttccaacttca 1728
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>dbj|AP006635.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT02F07, TM0101,
             complete sequence
          Length = 114487

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 137   aagtttctagaattgatttggaga 160
             ||||||| ||||||||||||||||
Sbjct: 80210 aagtttccagaattgatttggaga 80233


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,441,565
Number of Sequences: 3902068
Number of extensions: 4441565
Number of successful extensions: 92579
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92432
Number of HSP's gapped (non-prelim): 147
length of query: 437
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 415
effective length of database: 17,147,199,772
effective search space: 7116087905380
effective search space used: 7116087905380
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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