ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl39c03 |
|---|---|
| Clone Library Name | barley_pub |
>GLNE_NEIMA (Q9JX72) Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42)| ([Glutamate--ammonia-ligase] adenylyltransferase) (Glutamine-synthetase adenylyltransferase) (ATase) Length = 896 Score = 29.3 bits (64), Expect = 2.4 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Frame = -1 Query: 354 RLDVPPFHSS-MTRLL--GTWKEALFLA*LQMIEKELSFQAFANFEMASTEYNE 202 RLD HS + R L G K +FL L + E FQAFA+++ E NE Sbjct: 5 RLDTARHHSLFLARQLDNGKLKPEIFLPMLDKVLTEADFQAFADWDKIRAEENE 58
>LYAM1_PAPHA (Q28768) L-selectin precursor (Lymph node homing receptor)| (Leukocyte adhesion molecule 1) (LAM-1) (Leukocyte-endothelial cell adhesion molecule 1) (LECAM1) (CD62L antigen) Length = 372 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +3 Query: 66 HNGITMVTGHFSKNNMSWEYVIK-CQEYITTLVSKQTR 176 H+G T H+S+N M+W+ + C+E T LV+ Q + Sbjct: 33 HHGTDCWTYHYSENPMNWQKARRFCRENYTDLVAIQNK 70
>LYAM1_MACMU (Q95198) L-selectin precursor (Lymph node homing receptor)| (Leukocyte adhesion molecule 1) (LAM-1) (Leukocyte-endothelial cell adhesion molecule 1) (LECAM1) (CD62L antigen) Length = 372 Score = 29.3 bits (64), Expect = 2.4 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Frame = +3 Query: 66 HNGITMVTGHFSKNNMSWEYVIK-CQEYITTLVSKQTR 176 H+G T H+S+N M+W+ + C+E T LV+ Q + Sbjct: 33 HHGTDCWTYHYSENPMNWQKARRFCRENYTDLVAIQNK 70
>METK_AQUAE (O67222) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) (MAT) Length = 376 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = +3 Query: 78 TMVTGHFSKNNMSWEYVIKCQE 143 T V GHF K N+ WE + K +E Sbjct: 349 TSVYGHFGKENLPWEKLTKLEE 370
>SPSE_BACSU (P39625) Spore coat polysaccharide biosynthesis protein spsE| Length = 373 Score = 28.9 bits (63), Expect = 3.1 Identities = 15/62 (24%), Positives = 26/62 (41%) Frame = +3 Query: 204 HCILYLPSQNWQKLGN*VPSQSSAIRLEITLLSMFPTGASCWNEKEEHPVDMPCLAKKTS 383 HC+ P+ P + S + + L + FP +++ EHP + PC A + Sbjct: 180 HCVAKYPA----------PPEYSNLSVIPMLAAAFPEAVIGFSDHSEHPTEAPCAAVRLG 229 Query: 384 TK 389 K Sbjct: 230 AK 231
>IREB1_HUMAN (P21399) Iron-responsive element-binding protein 1 (IRE-BP 1) (Iron| regulatory protein 1) (IRP1) (Ferritin repressor protein) (Aconitate hydratase) (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase) Length = 889 Score = 28.9 bits (63), Expect = 3.1 Identities = 11/26 (42%), Positives = 15/26 (57%) Frame = -1 Query: 246 QAFANFEMASTEYNEHSCFIYSNV*F 169 Q F F++A +N+H FIY N F Sbjct: 397 QGFKGFQVAPEHHNDHKTFIYDNTEF 422
>GLND_PSYAR (Q4FUP5) [Protein-PII] uridylyltransferase (EC 2.7.7.59) (PII| uridylyl-transferase) (Uridylyl-removing enzyme) (UTase) Length = 915 Score = 28.5 bits (62), Expect = 4.1 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = +1 Query: 34 IDNDTSQKTDSITALLWSLDI 96 ID DTS K D++ ALLW + + Sbjct: 122 IDADTSSKIDNLVALLWDIGL 142
>STON1_HUMAN (Q9Y6Q2) Stonin-1 (Stoned B-like factor)| Length = 735 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = +2 Query: 251 LSSFSIICNQARNNASFHVPNRRVMLE*KGGTSSRYALPCKKNL 382 L S S+ C A NAS VP+ + K G S +P KKN+ Sbjct: 245 LRSLSMHCLCAEENASSFVPHTLFRSQPKSGWSFMLRIPEKKNM 288
>LYAM1_RAT (P30836) L-selectin precursor (Lymph node homing receptor)| (Leukocyte adhesion molecule 1) (LAM-1) (Lymphocyte antigen 22) (Ly-22) (Lymphocyte surface MEL-14 antigen) (Leukocyte-endothelial cell adhesion molecule 1) (LECAM1) (CD62L antigen) Length = 372 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = +3 Query: 66 HNGITMVTGHFSKNNMSWEYVIK-CQEYITTLVSKQTR 176 H+G T H+S+ +M+WE K C+ T LV+ Q + Sbjct: 33 HHGTHCWTYHYSERSMNWENARKFCKHNYTDLVAIQNK 70
>GUNB_PAELA (P23550) Endoglucanase B precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase B) (Cellulase B) (EG-B) Length = 566 Score = 28.1 bits (61), Expect = 5.3 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 14 ISKIYFTLTMTHPKKLTA*RHYYGHWTF 97 ++ +Y T+T + K L A H+YG W F Sbjct: 232 MTALYNTMTKLNDKNLIATVHFYGFWPF 259
>ALR_HAEDU (Q7VNC9) Alanine racemase (EC 5.1.1.1)| Length = 374 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%) Frame = -1 Query: 246 QAFANFEMASTEYNEHSCFIYSNV*FVYLPKL*Y---IPGI*SH 124 Q A FEMA+ +Y+ HS I ++ +Y P+ Y PGI H Sbjct: 190 QQIATFEMATEQYSAHSRSIAASSGILYWPQAHYEWVRPGIIMH 233
>LYAM1_BOVIN (P98131) L-selectin precursor (Lymph node homing receptor)| (Leukocyte adhesion molecule 1) (LAM-1) (Leukocyte-endothelial cell adhesion molecule 1) (LECAM1) (CD62L antigen) Length = 370 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = +3 Query: 66 HNGITMVTGHFSKNNMSWEYV-IKCQEYITTLVSKQTR 176 H+G T H+SK M WE C+E T LV+ Q + Sbjct: 33 HHGTDCWTYHYSKRPMPWEKARAFCRENYTDLVAIQNK 70
>YID9_YEAST (P40533) Hypothetical 54.9 kDa protein in CBR5-NOT3 intergenic| region Length = 473 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/22 (50%), Positives = 18/22 (81%), Gaps = 1/22 (4%) Frame = +3 Query: 63 QHNGIT-MVTGHFSKNNMSWEY 125 + NG T +VTGHF+ ++M+WE+ Sbjct: 419 EFNGNTGLVTGHFNTDSMTWEW 440
>PUR4_CAEEL (Q19311) Probable phosphoribosylformylglycinamidine synthase (EC| 6.3.5.3) (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) Length = 1343 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/44 (36%), Positives = 19/44 (43%) Frame = +3 Query: 219 LPSQNWQKLGN*VPSQSSAIRLEITLLSMFPTGASCWNEKEEHP 350 L S NW+KL +TLLS P S W E + HP Sbjct: 50 LISSNWEKL--------------VTLLSHSPFETSVWKESQLHP 79
>LYAM1_MOUSE (P18337) L-selectin precursor (Lymph node homing receptor)| (Leukocyte adhesion molecule 1) (LAM-1) (Lymphocyte antigen 22) (Ly-22) (Lymphocyte surface MEL-14 antigen) (Leukocyte-endothelial cell adhesion molecule 1) (LECAM1) (CD62L antigen) Length = 372 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%) Frame = +3 Query: 66 HNGITMVTGHFSKNNMSWEYVIK-CQEYITTLVSKQTR 176 H+G T H+S+ M+WE K C++ T LV+ Q + Sbjct: 33 HHGTHCWTYHYSEKPMNWENARKFCKQNYTDLVAIQNK 70
>DHS27_CAEEL (Q11177) Putative oxidoreductase dhs-27 (EC 1.-.-.-)| Length = 816 Score = 27.3 bits (59), Expect = 9.1 Identities = 11/28 (39%), Positives = 20/28 (71%) Frame = +2 Query: 215 VLAISKLAKAWKLSSFSIICNQARNNAS 298 V+A+++ ++ WK SSF+ + +ARN S Sbjct: 5 VVALNRESRRWKKSSFNELLKRARNQKS 32
>TATC_HAEIN (P44560) Sec-independent protein translocase protein tatC| Length = 256 Score = 27.3 bits (59), Expect = 9.1 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -3 Query: 181 QCLVCLLTKVVIYSWHLITYSHDILFLLKCPVTIVMP 71 +C++C VV+ L+ +S+DI + P+T VMP Sbjct: 23 RCVIC----VVLVFVALVYFSNDIYHFVAAPLTAVMP 55 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,440,003 Number of Sequences: 219361 Number of extensions: 1068179 Number of successful extensions: 2404 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2360 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2404 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 1380984984 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
