Clone Name | rbastl39c03 |
---|---|
Clone Library Name | barley_pub |
>gb|AC133341.11| Medicago truncatula clone mth2-28i3, complete sequence Length = 138850 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 7 atgacatatctcaaaaatatat 28 |||||||||||||||||||||| Sbjct: 72224 atgacatatctcaaaaatatat 72245
>emb|Y18554.1|MAL18554 Mortierella alpina ole2 gene for stearoyl-CoA desaturase Length = 3342 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 257 tccttctcaatcatctgcaat 277 ||||||||||||||||||||| Sbjct: 2286 tccttctcaatcatctgcaat 2266
>emb|CR407704.10| Zebrafish DNA sequence from clone CH211-195G8 in linkage group 17, complete sequence Length = 146938 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 12 atatctcaaaaatatatttca 32 ||||||||||||||||||||| Sbjct: 59408 atatctcaaaaatatatttca 59428
>gb|AF386797.1| Entamoeba histolytica signal recognition particle 54 kDa subunit SRP54, proteasome alpha subunit, serine-threonine protein kinase YAK1, and serine-threonine protein kinase PK2 genes, complete cds Length = 7049 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 161 aagtaaacaaactagacattg 181 ||||||||||||||||||||| Sbjct: 5893 aagtaaacaaactagacattg 5873
>gb|AC019197.7| Homo sapiens BAC clone RP11-361O8 from 2, complete sequence Length = 178255 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 11 catatctcaaaaatatatttcacat 35 |||||||||||||||||||| |||| Sbjct: 105277 catatctcaaaaatatattttacat 105253
>gb|AC004622.1| Homo sapiens chromosome 5, PAC clone 170m10 (LBNL H89), complete sequence Length = 85181 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 caaaaatatatttcacattg 37 |||||||||||||||||||| Sbjct: 38572 caaaaatatatttcacattg 38591
>gb|AC123919.4| Mus musculus BAC clone RP24-555D20 from chromosome 14, complete sequence Length = 151625 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 atgacatatctcaaaaatat 26 |||||||||||||||||||| Sbjct: 150356 atgacatatctcaaaaatat 150337
>gb|AC123061.4| Mus musculus BAC clone RP23-216H22 from 14, complete sequence Length = 193093 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 atgacatatctcaaaaatat 26 |||||||||||||||||||| Sbjct: 177944 atgacatatctcaaaaatat 177963
>gb|AC122312.3| Mus musculus BAC clone RP23-298K16 from 19, complete sequence Length = 206657 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 302 catgttcccaacaggcgcgt 321 |||||||||||||||||||| Sbjct: 61574 catgttcccaacaggcgcgt 61555
>emb|AL513206.6| Human DNA sequence from clone RP11-382F13 on chromosome 1 Contains part of the VAV3 gene for VAV3 oncogene, complete sequence Length = 108124 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 aaaaatatatttcacattga 38 |||||||||||||||||||| Sbjct: 60041 aaaaatatatttcacattga 60022
>emb|AL137061.12| Human DNA sequence from clone RP11-477B16 on chromosome 13 Contains the SOX21 gene for SRY (sex determining region Y)-box 21, a bromodomain containing 7 (BP75, NAG4, CELTIX1) (BRD7) pseudogene, a ribosomal protein L21 (RPL21) pseudogene and 2 CpG islands, complete sequence Length = 180538 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 93 catttcagcaaaaacaatat 112 |||||||||||||||||||| Sbjct: 38035 catttcagcaaaaacaatat 38016
>emb|AL133326.10| Human DNA sequence from clone RP3-398D13 on chromosome 6p24.3-25.3 Contains the 5' end of the F13A1 gene for coagulation factor XIII A chain precursor, a SNAP19 (sRNA activating protein complex 19kDa subunit) pseudogene and two putative novel gene, complete sequence Length = 147038 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ttctttccatgttcccaaca 314 |||||||||||||||||||| Sbjct: 43804 ttctttccatgttcccaaca 43785
>emb|CR513790.9| Zebrafish DNA sequence from clone CH211-132F7 in linkage group 15, complete sequence Length = 157412 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 aaaaatatatttcacattga 38 |||||||||||||||||||| Sbjct: 26537 aaaaatatatttcacattga 26556
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 gtatataaagcaagaatgct 203 |||||||||||||||||||| Sbjct: 4283217 gtatataaagcaagaatgct 4283198
>emb|BX571758.10| Zebrafish DNA sequence from clone CH211-34K1 in linkage group 15, complete sequence Length = 104614 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 aaaaatatatttcacattga 38 |||||||||||||||||||| Sbjct: 35496 aaaaatatatttcacattga 35515
>emb|CR352285.4| Zebrafish DNA sequence from clone CH211-210K13 in linkage group 11, complete sequence Length = 133334 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 tggacatttcagcaaaaaca 108 |||||||||||||||||||| Sbjct: 130080 tggacatttcagcaaaaaca 130061
>emb|BX572630.10| Zebrafish DNA sequence from clone CH211-24O10 in linkage group 15, complete sequence Length = 174316 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 aaaaatatatttcacattga 38 |||||||||||||||||||| Sbjct: 35083 aaaaatatatttcacattga 35064
>emb|BX530018.8| Zebrafish DNA sequence from clone DKEY-228B21 in linkage group 1, complete sequence Length = 221617 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 259 cttctcaatcatctgcaatcaggc 282 |||||||||||||||||| ||||| Sbjct: 219773 cttctcaatcatctgcaaacaggc 219750
>gb|AC093791.3| Homo sapiens BAC clone RP11-261K4 from 4, complete sequence Length = 166189 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tatctcaaaaatatatttca 32 |||||||||||||||||||| Sbjct: 106567 tatctcaaaaatatatttca 106586
>gb|AC099517.2| Homo sapiens chromosome 5 clone RP11-5H14, complete sequence Length = 150438 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 15 tctcaaaaatatatttcacattga 38 |||||||||||||||| ||||||| Sbjct: 75320 tctcaaaaatatatttgacattga 75343
>gb|AC022140.6| Homo sapiens chromosome 5 clone CTD-2306M5, complete sequence Length = 93133 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 aaaaatatatttcacattga 38 |||||||||||||||||||| Sbjct: 68186 aaaaatatatttcacattga 68167
>gb|AC091742.5| Homo sapiens BAC clone RP11-1220K2 from 7, complete sequence Length = 191041 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 atggtcactggacatttcag 100 |||||||||||||||||||| Sbjct: 88414 atggtcactggacatttcag 88433
>gb|AC010229.7| Homo sapiens chromosome 5 clone CTC-312N19, complete sequence Length = 70533 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 atgacatatctcaaaaatatattt 30 ||||||||||| |||||||||||| Sbjct: 49735 atgacatatcttaaaaatatattt 49758
>ref|XM_690432.1| PREDICTED: Danio rerio similar to LOC495103 protein (LOC567140), mRNA Length = 2882 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 259 cttctcaatcatctgcaatcaggc 282 |||||||||||||||||| ||||| Sbjct: 2423 cttctcaatcatctgcaaacaggc 2400
>gb|AF418272.1|AF418272 Homo sapiens coagulation factor XIII, A1 polypeptide (F13A1) gene, complete cds Length = 178952 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 ttctttccatgttcccaaca 314 |||||||||||||||||||| Sbjct: 54994 ttctttccatgttcccaaca 55013
>gb|AC008497.7| Homo sapiens chromosome 5 clone CTC-432M15, complete sequence Length = 132119 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 caaaaatatatttcacattg 37 |||||||||||||||||||| Sbjct: 23731 caaaaatatatttcacattg 23712
>gb|AC016598.5|AC016598 Homo sapiens chromosome 5 clone CTD-2050E21, complete sequence Length = 159866 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 atgacatatctcaaaaatatattt 30 ||||||||||| |||||||||||| Sbjct: 8006 atgacatatcttaaaaatatattt 8029
>gb|AF359369.1|AF359369 Macropodus opercularis cytochrome b gene, partial cds; tRNA-Thr, tRNA-Pro genes and D-loop, complete sequence; mitochondrial genes for mitochondrial products Length = 1034 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 131 caaatgccaggaatatatca 150 |||||||||||||||||||| Sbjct: 565 caaatgccaggaatatatca 546
>ref|XM_396214.2| PREDICTED: Apis mellifera similar to Rap1-interacting factor 1 (LOC412761), mRNA Length = 5973 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 231 aattggcaaaagcttggaaa 250 |||||||||||||||||||| Sbjct: 1721 aattggcaaaagcttggaaa 1740
>emb|BX088536.8| Zebrafish DNA sequence from clone CH211-186M20 in linkage group 14, complete sequence Length = 104242 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 tttggtaagtaaacaaacta 174 |||||||||||||||||||| Sbjct: 76750 tttggtaagtaaacaaacta 76731
>dbj|AB088221.1| Papaya leaf-distortion mosaic potyvirus genomic RNA, complete genome, strain:P Length = 10153 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 aaaagcttggaaactaagtt 257 |||||||||||||||||||| Sbjct: 4844 aaaagcttggaaactaagtt 4825
>emb|BX323990.6| Zebrafish DNA sequence from clone DKEYP-69B4 in linkage group 1, complete sequence Length = 199414 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 259 cttctcaatcatctgcaatcaggc 282 |||||||||||||||||| ||||| Sbjct: 79716 cttctcaatcatctgcaaacaggc 79739
>emb|BX469928.8| Zebrafish DNA sequence from clone DKEYP-47C5 in linkage group 22, complete sequence Length = 141594 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 19 aaaaatatatttcacattga 38 |||||||||||||||||||| Sbjct: 8330 aaaaatatatttcacattga 8311
>emb|Z71301.1|SCYNL025C S.cerevisiae chromosome XIV reading frame ORF YNL025c Length = 3732 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 133 aatgccaggaatatatcacaactttggtaagt 164 |||||| | ||||||||| ||||||||||||| Sbjct: 1520 aatgcccgcaatatatcagaactttggtaagt 1489
>gb|CP000021.1| Vibrio fischeri ES114 chromosome II, complete sequence Length = 1332022 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 102 aaaaacaatatgtcatggga 121 |||||||||||||||||||| Sbjct: 1234259 aaaaacaatatgtcatggga 1234240
>gb|DQ331746.1| Synthetic construct Saccharomyces cerevisiae clone FLH202295.01X SSN8 gene, complete sequence Length = 972 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 133 aatgccaggaatatatcacaactttggtaagt 164 |||||| | ||||||||| ||||||||||||| Sbjct: 398 aatgcccgcaatatatcagaactttggtaagt 429
>emb|AL844144.10| Mouse DNA sequence from clone RP23-204D17 on chromosome 2, complete sequence Length = 178965 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 321 tcatgctggaatgaaaaggaggaa 344 ||||||||||| |||||||||||| Sbjct: 123412 tcatgctggaaagaaaaggaggaa 123389
>gb|U20635.1|SCU20635 Saccharomyces cerevisiae cyclin homolog Ssn8p (SSN8) gene, complete cds Length = 1290 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 133 aatgccaggaatatatcacaactttggtaagt 164 |||||| | ||||||||| ||||||||||||| Sbjct: 572 aatgcccgcaatatatcagaactttggtaagt 603
>gb|U20221.1|SCU20221 Saccharomyces cerevisiae RNA polymerase II holoenzyme cyclin-like subunit (SRB11) gene, complete cds Length = 1608 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 133 aatgccaggaatatatcacaactttggtaagt 164 |||||| | ||||||||| ||||||||||||| Sbjct: 890 aatgcccgcaatatatcagaactttggtaagt 921
>gb|U16248.1|SCU16248 Saccharomyces cerevisiae C-type cyclin (UME3) gene, complete cds Length = 2664 Score = 40.1 bits (20), Expect = 5.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 133 aatgccaggaatatatcacaactttggtaagt 164 |||||| | ||||||||| ||||||||||||| Sbjct: 1555 aatgcccgcaatatatcagaactttggtaagt 1586
>emb|AL832899.1|HSM804210 Homo sapiens mRNA; cDNA DKFZp667N084 (from clone DKFZp667N084) Length = 4243 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 caaaaatatatttcacattg 37 |||||||||||||||||||| Sbjct: 2801 caaaaatatatttcacattg 2782
>emb|AL583890.13| Mouse DNA sequence from clone RP23-212F17 on chromosome 3, complete sequence Length = 122919 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 ttctgtacttgccatctcaaaatt 234 ||||| |||||||||||||||||| Sbjct: 39713 ttctgcacttgccatctcaaaatt 39690 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,671,412 Number of Sequences: 3902068 Number of extensions: 4671412 Number of successful extensions: 92469 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 92366 Number of HSP's gapped (non-prelim): 103 length of query: 390 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 368 effective length of database: 17,147,199,772 effective search space: 6310169516096 effective search space used: 6310169516096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)