ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39c01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT013154.1| Lycopersicon esculentum clone 134158R, mRNA sequence 38 1.4
2gb|AC095060.3| Homo sapiens BAC clone RP11-436F23 from 4, comple... 36 5.5
3emb|AL929441.37| Mouse DNA sequence from clone RP23-418E20 on ch... 36 5.5
4gb|AC019317.9| Homo sapiens chromosome , clone RP11-206L19, comp... 36 5.5
5gb|AC131935.7| Homo sapiens chromosome 11, clone RP11-756D7, com... 36 5.5
6gb|CP000192.1| Drosophila melanogaster genomic scaffold 21100002... 36 5.5

>gb|BT013154.1| Lycopersicon esculentum clone 134158R, mRNA sequence
          Length = 1453

 Score = 38.2 bits (19), Expect = 1.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 10   acaacatttaccaaggcct 28
            |||||||||||||||||||
Sbjct: 1320 acaacatttaccaaggcct 1302



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>gb|AC095060.3| Homo sapiens BAC clone RP11-436F23 from 4, complete sequence
          Length = 111259

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 11    caacatttaccaaggcct 28
             ||||||||||||||||||
Sbjct: 98584 caacatttaccaaggcct 98567



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>emb|AL929441.37| Mouse DNA sequence from clone RP23-418E20 on chromosome 4, complete
              sequence
          Length = 202920

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 18     taccaaggcctgccctga 35
              ||||||||||||||||||
Sbjct: 175369 taccaaggcctgccctga 175352



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>gb|AC019317.9| Homo sapiens chromosome , clone RP11-206L19, complete sequence
          Length = 146836

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 28    tgccctgatgaaccacca 45
             ||||||||||||||||||
Sbjct: 28512 tgccctgatgaaccacca 28529



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>gb|AC131935.7| Homo sapiens chromosome 11, clone RP11-756D7, complete sequence
          Length = 184254

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 28    tgccctgatgaaccacca 45
             ||||||||||||||||||
Sbjct: 49452 tgccctgatgaaccacca 49435



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>gb|CP000192.1| Drosophila melanogaster genomic scaffold 211000022280527
          Length = 181593

 Score = 36.2 bits (18), Expect = 5.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 1     atttagtgtacaacattt 18
             ||||||||||||||||||
Sbjct: 97484 atttagtgtacaacattt 97467


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 341,431
Number of Sequences: 3902068
Number of extensions: 341431
Number of successful extensions: 78797
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78788
Number of HSP's gapped (non-prelim): 9
length of query: 45
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 25
effective length of database: 17,155,003,908
effective search space: 428875097700
effective search space used: 428875097700
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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