ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39b11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473516.1| Oryza sativa (japonica cultivar-group), predic... 78 2e-11
2dbj|AK111806.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 2e-11
3dbj|AK111615.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 70 4e-09
5emb|AL606628.3|OSJN00055 Oryza sativa genomic DNA, chromosome 4,... 70 4e-09
6emb|BX548038.9| Zebrafish DNA sequence from clone DKEY-219C10 in... 44 0.25
7gb|AC165240.6| Mus musculus chromosome 5, clone RP24-174P7, comp... 42 0.99
8gb|AC012363.6| Homo sapiens BAC clone RP11-438O12 from 2, comple... 42 0.99
9gb|AC114624.24| Mus musculus chromosome 5, clone RP24-106K21, co... 42 0.99
10gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 3.9
11emb|AL022323.7|HS243E7 Human DNA sequence from clone CTA-243E7 o... 40 3.9
12emb|CR936323.2| Medicago truncatula chromosome 5 clone mth2-155c... 40 3.9
13emb|BX004890.11| Zebrafish DNA sequence from clone DKEY-9A6 in l... 40 3.9
14gb|U41105.2| Caenorhabditis elegans cosmid T02G5, complete sequence 40 3.9 
>ref|XM_473516.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2559

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 84/99 (84%)
 Strand = Plus / Minus

                                                                        
Query: 190  cttctcgttcttcgtggttcggagcagttctttcgccattgatgagaaggattgagcgcc 249
            |||||||||||| ||| |||| ||||||||||| |||||||  |||||||||||||| ||
Sbjct: 2547 cttctcgttctttgtgtttcgcagcagttcttttgccattgccgagaaggattgagcacc 2488

                                                   
Query: 250  atgagccatatctgcggaccgaagattaatgccctccaa 288
             |  ||||||||| | |  |||| |||||||||||||||
Sbjct: 2487 gttggccatatctccagcgcgaatattaatgccctccaa 2449
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>dbj|AK111806.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099G05, full
            insert sequence
          Length = 3539

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 84/99 (84%)
 Strand = Plus / Minus

                                                                        
Query: 190  cttctcgttcttcgtggttcggagcagttctttcgccattgatgagaaggattgagcgcc 249
            |||||||||||| ||| |||| ||||||||||| |||||||  |||||||||||||| ||
Sbjct: 3388 cttctcgttctttgtgtttcgcagcagttcttttgccattgccgagaaggattgagcacc 3329

                                                   
Query: 250  atgagccatatctgcggaccgaagattaatgccctccaa 288
             |  ||||||||| | |  |||| |||||||||||||||
Sbjct: 3328 gttggccatatctccagcgcgaatattaatgccctccaa 3290
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>dbj|AK111615.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106F11, full
            insert sequence
          Length = 2380

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 81/96 (84%)
 Strand = Plus / Minus

                                                                        
Query: 193  ctcgttcttcgtggttcggagcagttctttcgccattgatgagaaggattgagcgccatg 252
            ||||||||| ||| |||| ||||||||||| |||||||  |||||||||||||| || | 
Sbjct: 2161 ctcgttctttgtgtttcgcagcagttcttttgccattgccgagaaggattgagcaccgtt 2102

                                                
Query: 253  agccatatctgcggaccgaagattaatgccctccaa 288
             ||||||||| | |  |||| |||||||||||||||
Sbjct: 2101 ggccatatctccagcgcgaatattaatgccctccaa 2066
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 80/95 (84%)
 Strand = Plus / Plus

                                                                            
Query: 190      cttctcgttcttcgtggttcggagcagttctttcgccattgatgagaaggattgagcgcc 249
                |||||||||||| ||| |||| ||||||||||| |||||||  |||||||||||||| ||
Sbjct: 28269930 cttctcgttctttgtgtttcgcagcagttcttttgccattgccgagaaggattgagcacc 28269989

                                                   
Query: 250      atgagccatatctgcggaccgaagattaatgccct 284
                 |  ||||||||| | |  |||| |||||||||||
Sbjct: 28269990 gttggccatatctccagcgcgaatattaatgccct 28270024
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>emb|AL606628.3|OSJN00055 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0017B10,
             complete sequence
          Length = 150957

 Score = 69.9 bits (35), Expect = 4e-09
 Identities = 80/95 (84%)
 Strand = Plus / Plus

                                                                         
Query: 190   cttctcgttcttcgtggttcggagcagttctttcgccattgatgagaaggattgagcgcc 249
             |||||||||||| ||| |||| ||||||||||| |||||||  |||||||||||||| ||
Sbjct: 62238 cttctcgttctttgtgtttcgcagcagttcttttgccattgccgagaaggattgagcacc 62297

                                                
Query: 250   atgagccatatctgcggaccgaagattaatgccct 284
              |  ||||||||| | |  |||| |||||||||||
Sbjct: 62298 gttggccatatctccagcgcgaatattaatgccct 62332
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>emb|BX548038.9| Zebrafish DNA sequence from clone DKEY-219C10 in linkage group 9,
              complete sequence
          Length = 173526

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 139    aaaaggaggactttatacaatt 160
              ||||||||||||||||||||||
Sbjct: 101959 aaaaggaggactttatacaatt 101980
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>gb|AC165240.6| Mus musculus chromosome 5, clone RP24-174P7, complete sequence
          Length = 196437

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 123  atctcaaacaaacataaaaag 143
            |||||||||||||||||||||
Sbjct: 7637 atctcaaacaaacataaaaag 7657
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>gb|AC012363.6| Homo sapiens BAC clone RP11-438O12 from 2, complete sequence
          Length = 217346

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 121    ccatctcaaacaaacataaaa 141
              |||||||||||||||||||||
Sbjct: 141438 ccatctcaaacaaacataaaa 141418
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>gb|AC114624.24| Mus musculus chromosome 5, clone RP24-106K21, complete sequence
          Length = 197077

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 123    atctcaaacaaacataaaaag 143
              |||||||||||||||||||||
Sbjct: 122638 atctcaaacaaacataaaaag 122618
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>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
              sequence
          Length = 2300533

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 10     aacaattgatggtgtaaggt 29
              ||||||||||||||||||||
Sbjct: 944188 aacaattgatggtgtaaggt 944169
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>emb|AL022323.7|HS243E7 Human DNA sequence from clone CTA-243E7 on chromosome 22q12.1, complete
             sequence
          Length = 183113

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 121   ccatctcaaacaaacataaaaagg 144
             |||||||||||||||| |||||||
Sbjct: 46543 ccatctcaaacaaacaaaaaaagg 46566
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>emb|CR936323.2| Medicago truncatula chromosome 5 clone mth2-155c8, COMPLETE SEQUENCE
          Length = 136527

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   tcaaacaaacataaaaagga 145
             ||||||||||||||||||||
Sbjct: 19369 tcaaacaaacataaaaagga 19388
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>emb|BX004890.11| Zebrafish DNA sequence from clone DKEY-9A6 in linkage group 11,
             complete sequence
          Length = 211406

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 137   taaaaaggaggactttatac 156
             ||||||||||||||||||||
Sbjct: 41606 taaaaaggaggactttatac 41587
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>gb|U41105.2| Caenorhabditis elegans cosmid T02G5, complete sequence
          Length = 31951

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   cagttctttcgccattgatg 233
             ||||||||||||||||||||
Sbjct: 13934 cagttctttcgccattgatg 13915


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,596,916
Number of Sequences: 3902068
Number of extensions: 2596916
Number of successful extensions: 55520
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55482
Number of HSP's gapped (non-prelim): 38
length of query: 299
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 277
effective length of database: 17,147,199,772
effective search space: 4749774336844
effective search space used: 4749774336844
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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