ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl39b10 |
|---|---|
| Clone Library Name | barley_pub |
>PHSL_IPOBA (P27598) Alpha-1,4 glucan phosphorylase, L isozyme, chloroplast| precursor (EC 2.4.1.1) (Starch phosphorylase L) Length = 955 Score = 72.8 bits (177), Expect = 3e-13 Identities = 32/38 (84%), Positives = 35/38 (92%) Frame = -2 Query: 415 LWTRMSILNTAGSPKFSSDRTIHEYAKDIWDISPVIMP 302 +WTRMSILNTAGS KFSSDRTIHEYAKDIW+I PV+ P Sbjct: 918 IWTRMSILNTAGSYKFSSDRTIHEYAKDIWNIQPVVFP 955
>PHSL_VICFA (P53536) Alpha-1,4 glucan phosphorylase, L isozyme, chloroplast| precursor (EC 2.4.1.1) (Starch phosphorylase L) Length = 1003 Score = 66.2 bits (160), Expect = 3e-11 Identities = 29/34 (85%), Positives = 32/34 (94%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISPV 311 WTRMSILNTAGS KFSSDRTIHEYA++IW+I PV Sbjct: 967 WTRMSILNTAGSSKFSSDRTIHEYAREIWNIEPV 1000
>PHSL2_SOLTU (P53535) Alpha-1,4 glucan phosphorylase, L-2 isozyme, chloroplast| precursor (EC 2.4.1.1) (Starch phosphorylase L-2) Length = 974 Score = 65.5 bits (158), Expect = 5e-11 Identities = 29/37 (78%), Positives = 33/37 (89%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISPVIMP 302 WT+MSILNTAGS KFSSDRTIH+YA+DIW I PV +P Sbjct: 938 WTKMSILNTAGSFKFSSDRTIHQYARDIWRIEPVELP 974
>PHSL1_SOLTU (P04045) Alpha-1,4 glucan phosphorylase, L-1 isozyme, chloroplast| precursor (EC 2.4.1.1) (Starch phosphorylase L-1) Length = 966 Score = 62.8 bits (151), Expect = 3e-10 Identities = 29/34 (85%), Positives = 30/34 (88%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISPV 311 WT MSILNTAGS KFSSDRTIHEYAKDIW+I V Sbjct: 930 WTTMSILNTAGSYKFSSDRTIHEYAKDIWNIEAV 963
>PHSH_WHEAT (Q9LKJ3) Alpha-glucan phosphorylase, H isozyme (EC 2.4.1.1) (Starch| phosphorylase H) Length = 832 Score = 57.0 bits (136), Expect = 2e-08 Identities = 26/37 (70%), Positives = 30/37 (81%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISPVIMP 302 W +MSILNTAGS KFSSDRTI +YAK+IW IS +P Sbjct: 796 WVKMSILNTAGSGKFSSDRTIDQYAKEIWGISACPVP 832
>PHSG_SYNY3 (P73511) Glycogen phosphorylase (EC 2.4.1.1)| Length = 849 Score = 54.3 bits (129), Expect = 1e-07 Identities = 24/36 (66%), Positives = 28/36 (77%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISPVIM 305 W RM+ILN A KFSSDRTI EYA+DIW I PV++ Sbjct: 796 WARMAILNVARMGKFSSDRTIREYAEDIWAIKPVVI 831
>PHSH_ARATH (Q9SD76) Alpha-glucan phosphorylase, H isozyme (EC 2.4.1.1) (Starch| phosphorylase H) Length = 841 Score = 53.5 bits (127), Expect = 2e-07 Identities = 24/37 (64%), Positives = 30/37 (81%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISPVIMP 302 W +MSIL+TAGS KFSSDRTI +YAK+IW+I +P Sbjct: 805 WLKMSILSTAGSGKFSSDRTIAQYAKEIWNIEACPVP 841
>PHSH_VICFA (P53537) Alpha-glucan phosphorylase, H isozyme (EC 2.4.1.1) (Starch| phosphorylase H) Length = 842 Score = 53.5 bits (127), Expect = 2e-07 Identities = 24/37 (64%), Positives = 30/37 (81%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISPVIMP 302 W +MSIL+TAGS KFSSDRTI +YAK+IW+I +P Sbjct: 806 WLKMSILSTAGSGKFSSDRTIAQYAKEIWNIEECRVP 842
>PHSH_SOLTU (P32811) Alpha-glucan phosphorylase, H isozyme (EC 2.4.1.1) (Starch| phosphorylase H) Length = 838 Score = 53.1 bits (126), Expect = 2e-07 Identities = 23/37 (62%), Positives = 31/37 (83%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISPVIMP 302 W +MSIL+T+GS KFSSDRTI +YAK+IW+I+ +P Sbjct: 802 WIKMSILSTSGSGKFSSDRTISQYAKEIWNIAECRVP 838
>PYGL_RAT (P09811) Glycogen phosphorylase, liver form (EC 2.4.1.1)| Length = 849 Score = 48.5 bits (114), Expect = 6e-06 Identities = 21/33 (63%), Positives = 24/33 (72%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISP 314 W M + N A S KFSSDRTI EYAKDIW++ P Sbjct: 797 WNTMVLRNIAASGKFSSDRTIREYAKDIWNMEP 829
>PHSG_BACSU (P39123) Glycogen phosphorylase (EC 2.4.1.1)| Length = 798 Score = 48.5 bits (114), Expect = 6e-06 Identities = 22/35 (62%), Positives = 26/35 (74%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISPVI 308 W+ SI+N A S FSSDRTI EYAKDIW I P++ Sbjct: 764 WSEHSIVNIAHSGYFSSDRTIREYAKDIWGIKPMM 798
>PYGM_SHEEP (O18751) Glycogen phosphorylase, muscle form (EC 2.4.1.1)| (Myophosphorylase) Length = 841 Score = 48.1 bits (113), Expect = 8e-06 Identities = 21/33 (63%), Positives = 25/33 (75%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISP 314 WTRM I N A S KFSSDRTI +YA++IW + P Sbjct: 797 WTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 829
>PYGM_MOUSE (Q9WUB3) Glycogen phosphorylase, muscle form (EC 2.4.1.1)| (Myophosphorylase) Length = 841 Score = 48.1 bits (113), Expect = 8e-06 Identities = 21/33 (63%), Positives = 25/33 (75%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISP 314 WTRM I N A S KFSSDRTI +YA++IW + P Sbjct: 797 WTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 829
>PYGM_MACFA (Q8HXW4) Glycogen phosphorylase, muscle form (EC 2.4.1.1)| (Myophosphorylase) Length = 841 Score = 48.1 bits (113), Expect = 8e-06 Identities = 21/33 (63%), Positives = 25/33 (75%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISP 314 WTRM I N A S KFSSDRTI +YA++IW + P Sbjct: 797 WTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 829
>PYGM_HUMAN (P11217) Glycogen phosphorylase, muscle form (EC 2.4.1.1)| (Myophosphorylase) Length = 841 Score = 48.1 bits (113), Expect = 8e-06 Identities = 21/33 (63%), Positives = 25/33 (75%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISP 314 WTRM I N A S KFSSDRTI +YA++IW + P Sbjct: 797 WTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 829
>PYGM_BOVIN (P79334) Glycogen phosphorylase, muscle form (EC 2.4.1.1)| (Myophosphorylase) Length = 841 Score = 48.1 bits (113), Expect = 8e-06 Identities = 21/33 (63%), Positives = 25/33 (75%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISP 314 WTRM I N A S KFSSDRTI +YA++IW + P Sbjct: 797 WTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 829
>PYGM_RABIT (P00489) Glycogen phosphorylase, muscle form (EC 2.4.1.1)| (Myophosphorylase) Length = 842 Score = 48.1 bits (113), Expect = 8e-06 Identities = 21/33 (63%), Positives = 25/33 (75%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISP 314 WTRM I N A S KFSSDRTI +YA++IW + P Sbjct: 797 WTRMVIRNIATSGKFSSDRTIAQYAREIWGVEP 829
>PYGL_MOUSE (Q9ET01) Glycogen phosphorylase, liver form (EC 2.4.1.1)| Length = 849 Score = 48.1 bits (113), Expect = 8e-06 Identities = 21/33 (63%), Positives = 24/33 (72%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISP 314 W M + N A S KFSSDRTI EYAKDIW++ P Sbjct: 797 WNTMVLKNIAASGKFSSDRTIKEYAKDIWNMEP 829
>PYGM_RAT (P09812) Glycogen phosphorylase, muscle form (EC 2.4.1.1)| (Myophosphorylase) Length = 841 Score = 47.8 bits (112), Expect = 1e-05 Identities = 21/33 (63%), Positives = 25/33 (75%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISP 314 WTRM I N A S KFSSDRTI +YA++IW + P Sbjct: 797 WTRMVIRNIATSGKFSSDRTIAQYAREIWGLEP 829
>PYG_DROME (Q9XTL9) Glycogen phosphorylase (EC 2.4.1.1)| Length = 844 Score = 47.8 bits (112), Expect = 1e-05 Identities = 21/33 (63%), Positives = 24/33 (72%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISP 314 W MSI N A S KFSSDRTI EYA++IW + P Sbjct: 798 WLEMSINNIASSGKFSSDRTIAEYAREIWGVEP 830
>PHSG_CHLPN (Q9Z8N1) Glycogen phosphorylase (EC 2.4.1.1)| Length = 824 Score = 46.2 bits (108), Expect = 3e-05 Identities = 19/31 (61%), Positives = 24/31 (77%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDI 320 WT++SI NTAG FSSDR I +YA+DIW + Sbjct: 784 WTKISIYNTAGMGFFSSDRAIQDYARDIWHV 814
>PYGL_SHEEP (Q5MIB5) Glycogen phosphorylase, liver form (EC 2.4.1.1)| Length = 850 Score = 46.2 bits (108), Expect = 3e-05 Identities = 20/33 (60%), Positives = 24/33 (72%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISP 314 W M + N A S KFSSDRTI EYA+DIW++ P Sbjct: 797 WNIMVLKNIAASGKFSSDRTIKEYARDIWNMEP 829
>PYGL_HUMAN (P06737) Glycogen phosphorylase, liver form (EC 2.4.1.1)| Length = 846 Score = 45.4 bits (106), Expect = 5e-05 Identities = 19/33 (57%), Positives = 24/33 (72%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISP 314 W M + N A S KFSSDRTI EYA++IW++ P Sbjct: 797 WNTMVLKNIAASGKFSSDRTIKEYAQNIWNVEP 829
>PYGB_RAT (P53534) Glycogen phosphorylase, brain form (EC 2.4.1.1) (Fragment)| Length = 837 Score = 45.4 bits (106), Expect = 5e-05 Identities = 20/33 (60%), Positives = 24/33 (72%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISP 314 WT+ I N A S KFSSDRTI EYA++IW + P Sbjct: 797 WTKKVIRNIACSGKFSSDRTITEYAREIWGVEP 829
>PYGB_SHEEP (Q5MIB6) Glycogen phosphorylase, brain form (EC 2.4.1.1)| Length = 842 Score = 45.4 bits (106), Expect = 5e-05 Identities = 21/33 (63%), Positives = 23/33 (69%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISP 314 WT+ I N A S KFSSDRTI EYA+DIW P Sbjct: 797 WTKKVIRNIACSGKFSSDRTITEYARDIWGAEP 829
>PYGB_PONPY (Q5R5M6) Glycogen phosphorylase, brain form (EC 2.4.1.1)| Length = 842 Score = 45.4 bits (106), Expect = 5e-05 Identities = 20/33 (60%), Positives = 24/33 (72%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISP 314 WT+ I N A S KFSSDRTI EYA++IW + P Sbjct: 797 WTKKVIRNIACSGKFSSDRTITEYAREIWGVEP 829
>PYGB_MOUSE (Q8CI94) Glycogen phosphorylase, brain form (EC 2.4.1.1)| Length = 842 Score = 45.4 bits (106), Expect = 5e-05 Identities = 20/33 (60%), Positives = 24/33 (72%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISP 314 WT+ I N A S KFSSDRTI EYA++IW + P Sbjct: 797 WTKKVIRNIACSGKFSSDRTITEYAREIWGVEP 829
>PYGB_HUMAN (P11216) Glycogen phosphorylase, brain form (EC 2.4.1.1)| Length = 842 Score = 45.4 bits (106), Expect = 5e-05 Identities = 20/33 (60%), Positives = 24/33 (72%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISP 314 WT+ I N A S KFSSDRTI EYA++IW + P Sbjct: 797 WTKKVIRNIACSGKFSSDRTITEYAREIWGVEP 829
>PHS1_DICDI (Q00766) Glycogen phosphorylase 1 (EC 2.4.1.1) (GP1)| Length = 853 Score = 44.7 bits (104), Expect = 9e-05 Identities = 18/33 (54%), Positives = 25/33 (75%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISP 314 W + SI+N+A + FSSDR ++EYA+ IWDI P Sbjct: 810 WVKKSIINSASTYFFSSDRAMNEYAEQIWDIKP 842
>PHSG_SHIFL (P0AC87) Glycogen phosphorylase (EC 2.4.1.1)| Length = 815 Score = 43.1 bits (100), Expect = 3e-04 Identities = 20/34 (58%), Positives = 22/34 (64%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISPV 311 WT ++LN A FSSDRTI EYA IW I PV Sbjct: 780 WTAKAMLNIANMGYFSSDRTIKEYADHIWHIDPV 813
>PHSG_ECOLI (P0AC86) Glycogen phosphorylase (EC 2.4.1.1)| Length = 815 Score = 43.1 bits (100), Expect = 3e-04 Identities = 20/34 (58%), Positives = 22/34 (64%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISPV 311 WT ++LN A FSSDRTI EYA IW I PV Sbjct: 780 WTAKAMLNIANMGYFSSDRTIKEYADHIWHIDPV 813
>PHSG_CHLTR (O84250) Glycogen phosphorylase (EC 2.4.1.1)| Length = 814 Score = 42.0 bits (97), Expect = 6e-04 Identities = 18/32 (56%), Positives = 23/32 (71%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDIS 317 WT+ SI N G FSSDR+I EYA +IW++S Sbjct: 779 WTKKSIYNVGGIGFFSSDRSIAEYASNIWNVS 810
>PHSG_CHLMU (Q9PKE6) Glycogen phosphorylase (EC 2.4.1.1)| Length = 813 Score = 40.8 bits (94), Expect = 0.001 Identities = 17/32 (53%), Positives = 23/32 (71%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDIS 317 WT+ SI N G FSSDR+I +YA +IW++S Sbjct: 779 WTKKSIYNVGGIGFFSSDRSITDYASNIWNVS 810
>PHS2_DICDI (P34114) Glycogen phosphorylase 2 (EC 2.4.1.1) (GP2)| Length = 992 Score = 38.5 bits (88), Expect = 0.006 Identities = 17/31 (54%), Positives = 21/31 (67%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDI 320 W + SI+ + KFSSDRTI EYA+ IW I Sbjct: 876 WAKKSIMASVCCGKFSSDRTIKEYAQQIWGI 906
>PHSM_ECOLI (P00490) Maltodextrin phosphorylase (EC 2.4.1.1)| Length = 796 Score = 38.5 bits (88), Expect = 0.006 Identities = 17/29 (58%), Positives = 20/29 (68%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIW 326 WTR +ILNTA FSSDR+I +Y IW Sbjct: 764 WTRAAILNTARCGMFSSDRSIRDYQARIW 792
>PHSG_YEAST (P06738) Glycogen phosphorylase (EC 2.4.1.1)| Length = 901 Score = 38.5 bits (88), Expect = 0.006 Identities = 16/34 (47%), Positives = 22/34 (64%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISPV 311 W + S+L+ A FSSDR I EY+ IW++ PV Sbjct: 867 WLKKSVLSLANVGFFSSDRCIEEYSDTIWNVEPV 900
>PHSG_HAEIN (P45180) Glycogen phosphorylase (EC 2.4.1.1)| Length = 821 Score = 38.1 bits (87), Expect = 0.008 Identities = 17/34 (50%), Positives = 20/34 (58%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISPV 311 W +I N FSSDRTI EYA+ IW + PV Sbjct: 784 WIESTIQNIVNMGFFSSDRTIKEYAERIWKVEPV 817
>PHSG_PASMU (Q9CN90) Glycogen phosphorylase (EC 2.4.1.1)| Length = 818 Score = 37.4 bits (85), Expect = 0.014 Identities = 17/34 (50%), Positives = 20/34 (58%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDISPV 311 W ++ N FSSDRTI EYA+ IW I PV Sbjct: 784 WIDSTLQNIVNMSYFSSDRTILEYAEKIWKIKPV 817
>PHSM_STRPN (P29849) Maltodextrin phosphorylase (EC 2.4.1.1)| Length = 752 Score = 32.7 bits (73), Expect = 0.35 Identities = 14/32 (43%), Positives = 21/32 (65%) Frame = -2 Query: 412 WTRMSILNTAGSPKFSSDRTIHEYAKDIWDIS 317 W I+N + + FSSDRTI +Y +DIW ++ Sbjct: 721 WLDKVIVNISKAGFFSSDRTIAQYNEDIWHLN 752
>HLY1_AERHY (P55870) Hemolysin ahh1 precursor| Length = 577 Score = 29.6 bits (65), Expect = 2.9 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = -3 Query: 375 PSSAVTGRSTSTPRTYGISAPSSCPE 298 PSSA + S +TPR G++AP+ PE Sbjct: 300 PSSASSASSPTTPRITGLNAPAERPE 325
>PDE4B_HUMAN (Q07343) cAMP-specific 3',5'-cyclic phosphodiesterase 4B (EC| 3.1.4.17) (DPDE4) (PDE32) Length = 736 Score = 28.9 bits (63), Expect = 5.0 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -3 Query: 411 GQECLSSTQRVPPSSAVTGRSTSTPRTYGISAPSSCP 301 G+ C S ++PP S TP GIS P++ P Sbjct: 42 GRRCCSGNLQLPPLSQRQSERARTPEGDGISRPTTLP 78
>SYQ_BUCBP (Q89AD4) Glutaminyl-tRNA synthetase (EC 6.1.1.18) (Glutamine--tRNA| ligase) (GlnRS) Length = 550 Score = 28.9 bits (63), Expect = 5.0 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -1 Query: 83 RIMLEQNHQTNKLWCI 36 RI+ ++HQTNK WCI Sbjct: 193 RIIFSKHHQTNKKWCI 208
>MYCB2_HUMAN (O75592) Probable ubiquitin ligase protein MYCBP2 (EC 6.3.2.-) (Myc| binding protein 2) (Protein associated with Myc) (Pam/highwire/rpm-1 protein) Length = 4641 Score = 28.5 bits (62), Expect = 6.6 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -3 Query: 408 QECLSSTQRVPPSSAVTGRSTSTPRTYG 325 Q+ QR+P S AVT S++T TYG Sbjct: 2284 QDQAKKPQRIPGSPAVTAASSNTDMTYG 2311 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,671,241 Number of Sequences: 219361 Number of extensions: 1251306 Number of successful extensions: 3038 Number of sequences better than 10.0: 43 Number of HSP's better than 10.0 without gapping: 2969 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3037 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
