Clone Name | rbastl39b08 |
---|---|
Clone Library Name | barley_pub |
>TRPB_PSESY (P34817) Tryptophan synthase beta chain (EC 4.2.1.20)| Length = 408 Score = 33.9 bits (76), Expect = 0.19 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%) Frame = -2 Query: 445 NKSARRHGEVPAVGGAHDLRHGQGRAALRPEDH-----VAAQGDRSKHVVRHTFKTNRYV 281 +K R G +PA+ AH L RA P+DH ++ +GD+ V H +T + Sbjct: 347 HKCCRLEGIIPALESAHALAEVFKRAPTLPKDHLMVVNLSGRGDKDMQTVMHHMETTKQE 406 Query: 280 LH 275 H Sbjct: 407 KH 408
>FUSB_BURCE (P24127) Fusaric acid resistance protein fusB| Length = 142 Score = 32.7 bits (73), Expect = 0.43 Identities = 12/16 (75%), Positives = 12/16 (75%) Frame = -1 Query: 425 WRSPCSGRCA*PTPRA 378 WRSPC RCA P PRA Sbjct: 110 WRSPCGSRCAPPAPRA 125
>FANCA_HUMAN (O15360) Fanconi anemia group A protein (Protein FACA)| Length = 1455 Score = 31.6 bits (70), Expect = 0.95 Identities = 15/39 (38%), Positives = 16/39 (41%) Frame = +3 Query: 291 FVLNVCLTTCLLRSPWAATWSSGRRAALPCPWRRSCAPP 407 F+L C T C L A W L C WRR C P Sbjct: 1154 FILAKCQTKCPLILTSALVWWPSLEPVLLCRWRRHCQSP 1192
>CN065_HUMAN (Q8N9R9) Protein C14orf65| Length = 162 Score = 31.2 bits (69), Expect = 1.2 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 7/39 (17%) Frame = +3 Query: 333 PWAA----TWSS---GRRAALPCPWRRSCAPPTAGTSPC 428 PW + TW S A PC WR S +PP + SPC Sbjct: 99 PWRSGCPHTWGSVLSHPMPAAPCFWRSSPSPPVSAMSPC 137
>YIAO_ECOLI (P37676) 2,3-diketo-L-gulonate-binding periplasmic protein yiaO| precursor (2,3-DKG-binding protein) (Extracytoplasmic solute receptor protein yiaO) Length = 328 Score = 29.3 bits (64), Expect = 4.7 Identities = 21/53 (39%), Positives = 24/53 (45%) Frame = +1 Query: 259 AEIQSSVIRNGLS*MYVSLHACFDLLGPPRGLLDAEQPFLARGVGHAHLPLQG 417 A+ S +R G M +S F L P LLD PFL R HAH L G Sbjct: 72 AQAMISGVRGGTIDMEMSGSNNFAGLSPVMNLLDV--PFLFRDTAHAHKTLDG 122
>SYN_CLOPE (P58693) Asparaginyl-tRNA synthetase (EC 6.1.1.22)| (Asparagine--tRNA ligase) (AsnRS) Length = 465 Score = 28.5 bits (62), Expect = 8.1 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 8/110 (7%) Frame = +1 Query: 130 SFYNKCCPSKRKNERPKNTYMILQLHNAFAFFSINKNHVLIP-RAEIQSSVIRNGLS*MY 306 S Y K + L+ NAF F +N + S+ I N Sbjct: 9 SLYRNTSEYSDKKVKISGWIRTLRASNAFGFIEVNDGSFFKNVQVVFDSAKISNYKEISK 68 Query: 307 VSLHACFDLLGPPRGLLDAEQPF-------LARGVGHAHLPLQGLRHAFE 435 + + + ++G D++QPF + G+ + PLQ RH FE Sbjct: 69 LPISSSISVIGTLVETPDSKQPFEIQAEEIIVEGMSDSDYPLQKKRHTFE 118
>ACPS_SALPA (Q5PIJ4) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)| (Holo-ACP synthase) (4'-phosphopantetheinyl transferase acpS) Length = 126 Score = 28.5 bits (62), Expect = 8.1 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Frame = +1 Query: 181 NTYMILQLHNAFAFFSINKNHVLIPRAEIQSSVIRNGLS*MYVSLHACFDLLGPPRGLLD 360 N + I + H F + V A+ + IRNGL+ + D LG PR L Sbjct: 35 NEWAIWETHQQPVRFLAKRFAVKEAAAKAFGTGIRNGLA--FNQFEVFNDELGKPRLRLW 92 Query: 361 AEQPFLAR--GVGHAHLPLQGLRH 426 E LA GV H H+ L RH Sbjct: 93 GEALTLAEKLGVAHMHVTLADERH 116
>ACPS_SALTY (P63466) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)| (Holo-ACP synthase) (4'-phosphopantetheinyl transferase acpS) Length = 125 Score = 28.5 bits (62), Expect = 8.1 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Frame = +1 Query: 181 NTYMILQLHNAFAFFSINKNHVLIPRAEIQSSVIRNGLS*MYVSLHACFDLLGPPRGLLD 360 N + I + H F + V A+ + IRNGL+ + D LG PR L Sbjct: 34 NEWAIWETHQQPVRFLAKRFAVKEAAAKAFGTGIRNGLA--FNQFEVFNDELGKPRLRLW 91 Query: 361 AEQPFLAR--GVGHAHLPLQGLRH 426 E LA GV H H+ L RH Sbjct: 92 GEALTLAEKLGVAHMHVTLADERH 115
>ACPS_SALTI (P63467) Holo-[acyl-carrier-protein] synthase (EC 2.7.8.7)| (Holo-ACP synthase) (4'-phosphopantetheinyl transferase acpS) Length = 125 Score = 28.5 bits (62), Expect = 8.1 Identities = 27/84 (32%), Positives = 35/84 (41%), Gaps = 2/84 (2%) Frame = +1 Query: 181 NTYMILQLHNAFAFFSINKNHVLIPRAEIQSSVIRNGLS*MYVSLHACFDLLGPPRGLLD 360 N + I + H F + V A+ + IRNGL+ + D LG PR L Sbjct: 34 NEWAIWETHQQPVRFLAKRFAVKEAAAKAFGTGIRNGLA--FNQFEVFNDELGKPRLRLW 91 Query: 361 AEQPFLAR--GVGHAHLPLQGLRH 426 E LA GV H H+ L RH Sbjct: 92 GEALTLAEKLGVAHMHVTLADERH 115 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 64,261,051 Number of Sequences: 219361 Number of extensions: 1271471 Number of successful extensions: 3352 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 3268 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3352 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)