ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39b03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STR_KLEPN (P13082) Streptomycin 3''-kinase (EC 2.7.1.87) (Strept... 31 1.4
2EXOC7_MOUSE (O35250) Exocyst complex component 7 (Exocyst comple... 31 1.4
3SPL11_ARATH (Q9FZK0) Squamosa promoter-binding-like protein 11 31 1.9
4SPS_ORYSA (Q43802) Sucrose-phosphate synthase (EC 2.4.1.14) (UDP... 30 2.4
5PYRB_NOCFA (Q5YTM0) Aspartate carbamoyltransferase (EC 2.1.3.2) ... 30 3.2
6SPS_MAIZE (P31927) Sucrose-phosphate synthase (EC 2.4.1.14) (UDP... 30 4.1
7EXOC7_RAT (O54922) Exocyst complex component 7 (Exocyst complex ... 29 7.1

>STR_KLEPN (P13082) Streptomycin 3''-kinase (EC 2.7.1.87) (Streptomycin|
           3''-phosphotransferase) (SPH)
          Length = 266

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 30/100 (30%), Positives = 38/100 (38%), Gaps = 9/100 (9%)
 Frame = +1

Query: 181 HFNVTHSNDHGW------GPLSARTLD*SHYFS---FSSPSXXXXXXXXXXXXSTTRKRS 333
           H NV    D GW      G L  RT D ++ F+    S P                  R 
Sbjct: 157 HENVLDFGDRGWLAIDPHGLLGERTFDYANIFTNPDLSDPG-----------------RP 199

Query: 334 VASAPGISDARL*FVLQLGGWHENH*LALQVALCGSSAAW 453
           +A  PG  +ARL  V+   G+     L   +A  G SAAW
Sbjct: 200 LAILPGRLEARLSIVVATTGFEPERLLRWIIAWTGLSAAW 239



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>EXOC7_MOUSE (O35250) Exocyst complex component 7 (Exocyst complex component|
           Exo70)
          Length = 697

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 13/21 (61%), Positives = 14/21 (66%)
 Frame = +2

Query: 59  YSKFAHRHGSKPNILNPEKYI 121
           Y  F HR+GS P   NPEKYI
Sbjct: 658 YGAFLHRYGSVPFTKNPEKYI 678



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>SPL11_ARATH (Q9FZK0) Squamosa promoter-binding-like protein 11|
          Length = 393

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 329 GASHPHPEFQMPGCDLSFSSAVGTRTTSWLCRSRSVVP 442
           G S P P  Q+ GC+L  SSA G      +C   S  P
Sbjct: 167 GQSMPVPRCQIDGCELDLSSAKGYHRKHKVCEKHSKCP 204



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>SPS_ORYSA (Q43802) Sucrose-phosphate synthase (EC 2.4.1.14)|
            (UDP-glucose-fructose-phosphate glucosyltransferase)
          Length = 1049

 Score = 30.4 bits (67), Expect = 2.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 324  QTERRIRTRNFRCQAVICPSARRLAREPLVGSAGRAL 434
            +   R+R R  RC  + C +A RL   PL+ S  +AL
Sbjct: 933  EMRERMRMRGLRCHLMYCRNATRLQVVPLLASRSQAL 969



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>PYRB_NOCFA (Q5YTM0) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate|
           transcarbamylase) (ATCase)
          Length = 319

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = -2

Query: 380 RTNHSLASEIPGADATLRLRV 318
           R +H L +E+PGADA L LRV
Sbjct: 212 RVSHHLDAELPGADAVLMLRV 232



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>SPS_MAIZE (P31927) Sucrose-phosphate synthase (EC 2.4.1.14)|
            (UDP-glucose-fructose-phosphate glucosyltransferase)
          Length = 1068

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 324  QTERRIRTRNFRCQAVICPSARRLAREPLVGSAGRAL 434
            +   R+R R  RC  + C ++ RL   PL+ S  +AL
Sbjct: 936  EMRERLRMRGLRCHIMYCRNSTRLQVVPLLASRSQAL 972



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>EXOC7_RAT (O54922) Exocyst complex component 7 (Exocyst complex component|
           Exo70) (rExo70)
          Length = 653

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +2

Query: 59  YSKFAHRHGSKPNILNPEKYI 121
           Y  F HR+ S P   NPEKYI
Sbjct: 614 YGAFLHRYSSVPFTKNPEKYI 634


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,321,230
Number of Sequences: 219361
Number of extensions: 1081085
Number of successful extensions: 2497
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2497
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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