ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl39b03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT019094.1| Zea mays clone Contig693.F mRNA sequence Length = 927 Score = 48.1 bits (24), Expect = 0.026 Identities = 30/32 (93%) Strand = Plus / Plus Query: 377 tccttcagctcggcggttggcacgagaaccac 408 ||||| |||||||||||||||||||| ||||| Sbjct: 448 tccttgagctcggcggttggcacgagcaccac 479
>ref|XM_459461.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0E03773g) partial mRNA Length = 3648 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Minus Query: 285 tttcttctatatgttttagtaac 307 ||||||||||||||||||||||| Sbjct: 3052 tttcttctatatgttttagtaac 3030
>emb|CR382137.1| Debaryomyces hansenii chromosome E of strain CBS767 of Debaryomyces hansenii Length = 2037969 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 285 tttcttctatatgttttagtaac 307 ||||||||||||||||||||||| Sbjct: 270680 tttcttctatatgttttagtaac 270702
>emb|BX322556.5| Human DNA sequence from clone XXyac-4AC12 on chromosome X, complete sequence Length = 61886 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 272 cttctctacactatttcttcta 293 |||||||||||||||||||||| Sbjct: 48298 cttctctacactatttcttcta 48277
>emb|AL035446.4|HS460G2 Human DNA sequence from clone RP3-460G2 on chromosome 6q24.1-24.3 Contains a novel gene and part of a 40s ribosomal protein S3a (v-fos transformation effector protein 1) (RPS3A)(FTE1) pseudogene, complete sequence Length = 102552 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 255 cttttctttctcttctccttct 276 |||||||||||||||||||||| Sbjct: 49546 cttttctttctcttctccttct 49525
>gb|AC092808.2| Homo sapiens chromosome 1 clone RP11-360C2, complete sequence Length = 151426 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 256 ttttctttctcttctccttctc 277 |||||||||||||||||||||| Sbjct: 51745 ttttctttctcttctccttctc 51766
>gb|AC116156.3| Homo sapiens chromosome 11, clone RP11-44D14, complete sequence Length = 176597 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 255 cttttctttctcttctccttct 276 |||||||||||||||||||||| Sbjct: 7063 cttttctttctcttctccttct 7084
>gb|AC087755.7| Homo sapiens chromosome 8, clone RP11-64H23, complete sequence Length = 57324 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 255 cttttctttctcttctccttct 276 |||||||||||||||||||||| Sbjct: 24843 cttttctttctcttctccttct 24864
>gb|AC172115.2| Rhesus Macaque CHR16 BAC CH250-479K3 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 138615 Score = 44.1 bits (22), Expect = 0.41 Identities = 25/26 (96%) Strand = Plus / Plus Query: 283 tatttcttctatatgttttagtaact 308 ||||| |||||||||||||||||||| Sbjct: 14957 tatttattctatatgttttagtaact 14982
>gb|AC131574.4| Homo sapiens chromosome 11, clone RP11-957H15, complete sequence Length = 166214 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 255 cttttctttctcttctccttct 276 |||||||||||||||||||||| Sbjct: 22425 cttttctttctcttctccttct 22446
>ref|NM_180992.2| Bos taurus albumin (ALB), mRNA Length = 2061 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 254 acttttctttctcttctccttctct 278 |||||| |||||||||||||||||| Sbjct: 45 acttttatttctcttctccttctct 69
>gb|AC102232.12| Mus musculus chromosome 18, clone RP24-76F12, complete sequence Length = 232199 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 257 tttctttctcttctccttctc 277 ||||||||||||||||||||| Sbjct: 147015 tttctttctcttctccttctc 147035
>gb|AC134791.8| Mus musculus chromosome 14, clone RP23-377F8, complete sequence Length = 210013 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 254 acttttctttctcttctccttctct 278 |||||||||| |||||||||||||| Sbjct: 176211 acttttctttgtcttctccttctct 176235
>gb|AC154380.2| Mus musculus BAC clone RP23-52F1 from chromosome 14, complete sequence Length = 244524 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 254 acttttctttctcttctccttctct 278 |||||||||| |||||||||||||| Sbjct: 154207 acttttctttgtcttctccttctct 154231
>emb|AL590101.9| Human DNA sequence from clone RP11-318L16 on chromosome 1 Contains the 3' end of a novel gene (FLJ10876), the TRAF5 gene for TNF receptor-associated factor 5, a novel gene (MGC14801), a sorting nexin 25 (SNX25) pseudogene and a actin related protein 2/3 complex, subunit 3 21kDa (ARPC3) pseudogene, complete sequence Length = 180169 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 122 actccaacccattaaaaccag 142 ||||||||||||||||||||| Sbjct: 162249 actccaacccattaaaaccag 162269
>emb|AL355863.18| Human DNA sequence from clone RP11-479A21 on chromosome 10 Contains an HSPC023 protein (HSPC023) pseudogene, complete sequence Length = 151552 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 ttttctttctcttctccttct 276 ||||||||||||||||||||| Sbjct: 108884 ttttctttctcttctccttct 108904
>emb|AL161423.9| Human DNA sequence from clone RP11-168J5 on chromosome 13 Contains a CpG island, complete sequence Length = 164786 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 282 ctatttcttctatatgtttta 302 ||||||||||||||||||||| Sbjct: 141575 ctatttcttctatatgtttta 141595
>emb|AL033397.7|HS27K12 Human DNA sequence from clone RP1-27K12 on chromosome 6p11.2-12.3 Contains the GCLC gene for glutamate-cysteine ligase catalytic subunit (GCS), a novel gene and one CpG island, complete sequence Length = 164027 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 256 ttttctttctcttctccttct 276 ||||||||||||||||||||| Sbjct: 140971 ttttctttctcttctccttct 140991
>gb|AF542068.1| Bos taurus serum albumin (alb) mRNA, complete cds Length = 1824 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 254 acttttctttctcttctccttctct 278 |||||| |||||||||||||||||| Sbjct: 13 acttttatttctcttctccttctct 37
>emb|Y17769.1|BTY17769 Bos taurus mRNA for bovine serum albumin Length = 1883 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 254 acttttctttctcttctccttctct 278 |||||| |||||||||||||||||| Sbjct: 28 acttttatttctcttctccttctct 52
>emb|X58989.1|BTBSA Bos taurus mRNA for serum albumin Length = 2061 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 254 acttttctttctcttctccttctct 278 |||||| |||||||||||||||||| Sbjct: 45 acttttatttctcttctccttctct 69
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 444 cgccgcctggtgctgctgatg 464 ||||||||||||||||||||| Sbjct: 543506 cgccgcctggtgctgctgatg 543526
>gb|M73993.1|BOVALBUMIN Bos taurus albumin (ALB) mRNA, complete cds Length = 2035 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 254 acttttctttctcttctccttctct 278 |||||| |||||||||||||||||| Sbjct: 27 acttttatttctcttctccttctct 51
>gb|BC102742.1| Bos taurus albumin, mRNA (cDNA clone MGC:127780 IMAGE:7962798), complete cds Length = 2067 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 254 acttttctttctcttctccttctct 278 |||||| |||||||||||||||||| Sbjct: 46 acttttatttctcttctccttctct 70
>gb|AC019080.6| Homo sapiens BAC clone RP11-337N6 from 2, complete sequence Length = 179616 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 cttttctttctcttctccttc 275 ||||||||||||||||||||| Sbjct: 24938 cttttctttctcttctccttc 24958
>gb|AC117075.2| Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence Length = 254733 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 258 ttctttctcttctccttctct 278 ||||||||||||||||||||| Sbjct: 50687 ttctttctcttctccttctct 50707
>emb|BX649430.3| Mouse DNA sequence from clone RP24-553E7 on chromosome 2, complete sequence Length = 31120 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 258 ttctttctcttctccttctct 278 ||||||||||||||||||||| Sbjct: 568 ttctttctcttctccttctct 548
>emb|AL928593.4| Mouse DNA sequence from clone RP23-100E9 on chromosome 2, complete sequence Length = 195840 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 258 ttctttctcttctccttctct 278 ||||||||||||||||||||| Sbjct: 1433 ttctttctcttctccttctct 1453
>gb|AC100269.7| Mus musculus chromosome 5, clone RP23-67B9, complete sequence Length = 237273 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 actacttttctttctcttct 270 |||||||||||||||||||| Sbjct: 63545 actacttttctttctcttct 63526
>gb|AC129162.5| Rattus norvegicus 9 BAC CH230-108L13 (Children's Hospital Oakland Research Institute) complete sequence Length = 245677 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 cttttctttctcttctccttctct 278 |||||||| ||||||||||||||| Sbjct: 117205 cttttcttcctcttctccttctct 117182
>gb|AF370378.1| Homo sapiens FP3059 mRNA, complete cds Length = 1951 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 cttttctttctcttctccttctct 278 ||||||||||||||||| |||||| Sbjct: 1933 cttttctttctcttctctttctct 1910
>emb|CR956392.5| M.truncatula DNA sequence from clone MTH2-52P12 on chromosome 3, complete sequence Length = 115163 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 atggttccaaaccaaacatt 100 |||||||||||||||||||| Sbjct: 59877 atggttccaaaccaaacatt 59896
>emb|AJ243961.1|OSA243961 Oryza sativa chromosome 4 BAC l1332 genomic sequences Length = 74658 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 255 cttttctttctcttctcctt 274 |||||||||||||||||||| Sbjct: 49993 cttttctttctcttctcctt 49974
>ref|XM_721334.1| Plasmodium yoelii yoelii str. 17XNL RNA 3'-terminal phosphate cyclase protein (PY05891) partial mRNA Length = 1668 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ttttctttctcttctccttc 275 |||||||||||||||||||| Sbjct: 1244 ttttctttctcttctccttc 1225
>gb|AC074384.7| Homo sapiens BAC clone RP11-374N8 from 7, complete sequence Length = 92118 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 257 tttctttctcttctccttct 276 |||||||||||||||||||| Sbjct: 55546 tttctttctcttctccttct 55565
>gb|AC122167.8| Medicago truncatula clone mth1-10d10, complete sequence Length = 93126 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 tacttttctttctcttctcc 272 |||||||||||||||||||| Sbjct: 18735 tacttttctttctcttctcc 18754
>gb|AC147006.18| Medicago truncatula clone mth2-62m1, complete sequence Length = 126833 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 252 ctacttttctttctcttctccttctcta 279 ||||| ||||||||||| |||||||||| Sbjct: 269 ctactcttctttctcttatccttctcta 296
>emb|AL606532.6| Human DNA sequence from clone RP13-25A17 on chromosome X, complete sequence Length = 64802 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ttttctttctcttctccttc 275 |||||||||||||||||||| Sbjct: 25215 ttttctttctcttctccttc 25196
>gb|AC101835.7| Mus musculus, clone RP23-227D7, complete sequence Length = 208667 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 251 actacttttctttctcttct 270 |||||||||||||||||||| Sbjct: 121112 actacttttctttctcttct 121131
>emb|AL359703.13| Human DNA sequence from clone RP11-389N12 on chromosome X, complete sequence Length = 187779 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 tttctttctcttctccttct 276 |||||||||||||||||||| Sbjct: 149288 tttctttctcttctccttct 149269
>emb|AL353705.23| Human DNA sequence from clone RP11-336N8 on chromosome 9q21.11-21.31 Contains a synaptogyrin 2 (SYNGR2) pseudogene, an argininosuccinate synthetase (ASS) pseudogene, a ribosomal protein L21 (RPL21) pseudogene, a CDC28 protein kinase regulatory subunit 2 (CKS2) pseudogene, the C9orf81 gene for chromosome 9 open reading frame 81 and a CpG island, complete sequence Length = 166372 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 256 ttttctttctcttctccttctcta 279 ||||||||||||| |||||||||| Sbjct: 2809 ttttctttctcttttccttctcta 2832
>gb|DQ352997.1| Prenolepis imparis voucher CS0297 abdominal-A (AbdA) gene, partial cds Length = 535 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 313 ccgcctgctgctgctgatgatgat 290
>gb|DQ352984.1| Myrmecorhynchus sp. CSM-2006 abdominal-A (AbdA) gene, partial cds Length = 539 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 313 ccgcctgctgctgctgatgatgat 290
>gb|DQ352982.1| Prolasius sp. CSM-2006 abdominal-A (AbdA) gene, partial cds Length = 544 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 313 ccgcctgctgctgctgatgatgat 290
>gb|DQ352980.1| Aneuretus simoni voucher RA0258 abdominal-A (AbdA) gene, partial cds Length = 611 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 313 ccgcctgctgctgctgatgatgat 290
>gb|DQ352976.1| Dinoponera gigantea voucher RA0350 abdominal-A (AbdA) gene, partial cds Length = 648 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 313 ccgcctgctgctgctgatgatgat 290
>gb|DQ352963.1| Acanthomyops latipes voucher RA0233 abdominal-A (AbdA) gene, partial cds Length = 648 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 313 ccgcctgctgctgctgatgatgat 290
>gb|DQ352958.1| Myrmelachista sp. CSM-2006 abdominal-A (AbdA) gene, partial cds Length = 645 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 310 ccgcctgctgctgctgatgatgat 287
>gb|DQ352954.1| Plagiolepis sp. CSM-2006 abdominal-A (AbdA) gene, partial cds Length = 645 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 313 ccgcctgctgctgctgatgatgat 290
>gb|DQ352952.1| Lasius alienus voucher CS0268 abdominal-A (AbdA) gene, partial cds Length = 648 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 313 ccgcctgctgctgctgatgatgat 290
>gb|DQ352919.1| Eurhopalothrix sp. CSM-2006 abdominal-A (AbdA) gene, partial cds Length = 606 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 271 ccgcctgctgctgctgatgatgat 248
>gb|DQ352918.1| Myrmecocystus mexicanus voucher RA0223 abdominal-A (AbdA) gene, partial cds Length = 596 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 261 ccgcctgctgctgctgatgatgat 238
>gb|DQ352917.1| Temnothorax tricarinatus voucher RA0240 abdominal-A (AbdA) gene, partial cds Length = 590 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 258 ccgcctgctgctgctgatgatgat 235
>gb|DQ352911.1| Brachymyrmex sp. CSM-2006 abdominal-A (AbdA) gene, partial cds Length = 540 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 205 ccgcctgctgctgctgatgatgat 182
>gb|DQ352910.1| Stigmacros sp. CSM-2006 abdominal-A (AbdA) gene, partial cds Length = 648 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 313 ccgcctgctgctgctgatgatgat 290
>gb|DQ352879.1| Heteroponera panamensis voucher RA0362 abdominal-A (AbdA) gene, partial cds Length = 645 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 310 ccgcctgctgctgctgatgatgat 287
>gb|DQ352870.1| Cardiocondyla emeryi voucher RA0330 abdominal-A (AbdA) gene, partial cds Length = 590 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 258 ccgcctgctgctgctgatgatgat 235
>gb|DQ352869.1| Pachycondyla stigma voucher RA0243 abdominal-A (AbdA) gene, partial cds Length = 648 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 313 ccgcctgctgctgctgatgatgat 290
>gb|DQ352865.1| Heteroponera microps voucher RA0384 abdominal-A (AbdA) gene, partial cds Length = 584 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 252 ccgcctgctgctgctgatgatgat 229
>emb|AL022393.1|HSP373C6 Human DNA sequence from clone XX-P373C6 on chromosome 6p21.31-21.33 Contains the gene for a novel C2H2 type zinc finger protein, the ZNF193 gene for zinc finger protein 193, a TOB1 or 2 (transducer of ERBB2, 1 or 2) pseudogene, the 3' end of a novel gene, two zinc finger protein pseudogenes and a CpG island, complete sequence Length = 85654 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 aacaactgcccttgtatact 163 |||||||||||||||||||| Sbjct: 62743 aacaactgcccttgtatact 62762
>emb|AL008638.1|HS992D9 Human DNA sequence from clone CTA-992D9 on chromosome 22q12.1, complete sequence Length = 155147 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 254 acttttctttctcttctcct 273 |||||||||||||||||||| Sbjct: 28863 acttttctttctcttctcct 28882
>gb|AC129929.5| Homo sapiens chromosome 11, clone RP5-1075F20, complete sequence Length = 141449 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 cttttctttctcttctccttctct 278 ||||||||||||||||| |||||| Sbjct: 38637 cttttctttctcttctctttctct 38614
>emb|AL606466.12| Mouse DNA sequence from clone RP23-348N2 on chromosome 11 Contains the 5' end of the Ppp3r1 gene for protein phospatase 3 regulatory subunit B alpha isoform (calcineurin B, type I), a ribosomal protein L39 (Rpl39) pseudogene, a novel gene, the Plek gene for pleckstrin, a CUB domain and EGF-like repeat containing (Cegf) protein pseudogene and a CpG island, complete sequence Length = 201805 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 255 cttttctttctcttctccttctct 278 |||||| ||||||||||||||||| Sbjct: 8027 cttttccttctcttctccttctct 8050
>emb|AL662970.2|OSJN00174 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0058K23, complete sequence Length = 164805 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 cttttctttctcttctcctt 274 |||||||||||||||||||| Sbjct: 68803 cttttctttctcttctcctt 68822
>gb|AC158917.6| Mus musculus chromosome 5, clone RP24-238D24, complete sequence Length = 184805 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 actacttttctttctcttct 270 |||||||||||||||||||| Sbjct: 163861 actacttttctttctcttct 163842
>emb|BX546493.8| Zebrafish DNA sequence from clone RP71-34B19, complete sequence Length = 173065 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ttttctttctcttctccttc 275 |||||||||||||||||||| Sbjct: 28973 ttttctttctcttctccttc 28954
>gb|AC016933.20| Homo sapiens 3 BAC RP11-166D18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 153763 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 257 tttctttctcttctccttct 276 |||||||||||||||||||| Sbjct: 6382 tttctttctcttctccttct 6363
>gb|AC104627.8| Drosophila melanogaster X BAC RP98-4A11 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187921 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 ctggtgctgctgatgatgat 469 |||||||||||||||||||| Sbjct: 124908 ctggtgctgctgatgatgat 124927
>gb|DP000057.1| Dasypus novemcinctus target 117 genomic scaffold Length = 444202 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 caacccattaaaaccagtaa 145 |||||||||||||||||||| Sbjct: 187568 caacccattaaaaccagtaa 187587
>ref|NM_132606.1| Drosophila melanogaster CG3754-RA (CG3754), mRNA Length = 1935 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 ctggtgctgctgatgatgat 469 |||||||||||||||||||| Sbjct: 1203 ctggtgctgctgatgatgat 1184
>gb|AC091836.2| Homo sapiens chromosome 5 clone CTD-2060B6, complete sequence Length = 169695 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 cttctccttctctacactat 285 |||||||||||||||||||| Sbjct: 16269 cttctccttctctacactat 16288
>gb|AC091577.9| Homo sapiens chromosome 18, clone RP11-704J2, complete sequence Length = 158840 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 tctttctcttctccttctct 278 |||||||||||||||||||| Sbjct: 122213 tctttctcttctccttctct 122232
>gb|AC008877.9| Homo sapiens chromosome 5 clone CTD-2204B21, complete sequence Length = 163575 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 cttctccttctctacactat 285 |||||||||||||||||||| Sbjct: 26907 cttctccttctctacactat 26888
>gb|AC107828.16| Mus musculus chromosome 18, clone RP23-213N4, complete sequence Length = 212092 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 255 cttttctttctcttctccttctct 278 ||||| |||||||||||||||||| Sbjct: 81856 cttttttttctcttctccttctct 81879
>gb|AC149206.2| Medicago truncatula chromosome 2 BAC clone mte1-49n15, complete sequence Length = 113539 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 tacttttctttctcttctcc 272 |||||||||||||||||||| Sbjct: 52022 tacttttctttctcttctcc 52041
>gb|AE009951.2| Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome Length = 2174500 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 292 tatatgttttagtaactcct 311 |||||||||||||||||||| Sbjct: 187180 tatatgttttagtaactcct 187199
>gb|AF022981.3| Caenorhabditis elegans cosmid W03F9, complete sequence Length = 42879 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 256 ttttctttctcttctccttctcta 279 |||||||||||||||| ||||||| Sbjct: 31122 ttttctttctcttctcattctcta 31099
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 327 acggagcgtcgcatccgcac 346 |||||||||||||||||||| Sbjct: 2540816 acggagcgtcgcatccgcac 2540797
>emb|AL114454.1|CNS01BNI Botrytis cinerea strain T4 cDNA library Length = 1320 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 tctttctcttctccttctct 278 |||||||||||||||||||| Sbjct: 704 tctttctcttctccttctct 685
>gb|AC015963.8|AC015963 Homo sapiens chromosome , clone RP11-112B21, complete sequence Length = 172657 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 tctttctcttctccttctct 278 |||||||||||||||||||| Sbjct: 89323 tctttctcttctccttctct 89304
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 cttttctttctcttctcctt 274 |||||||||||||||||||| Sbjct: 31491120 cttttctttctcttctcctt 31491139
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 cttttctttctcttctccttctct 278 |||||||||||||||| ||||||| Sbjct: 1961877 cttttctttctcttcttcttctct 1961854
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 255 cttttctttctcttctccttctct 278 ||||||||| |||||||||||||| Sbjct: 26348438 cttttctttttcttctccttctct 26348461
>gb|AC154535.2| Mus musculus BAC clone RP23-447M9 from chromosome 13, complete sequence Length = 179176 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 tctttctcttctccttctct 278 |||||||||||||||||||| Sbjct: 104283 tctttctcttctccttctct 104264
>gb|AC037198.7|AC037198 Homo sapiens chromosome 15 clone CTD-2033D15 map 15q14, complete sequence Length = 185695 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ttttctttctcttctccttc 275 |||||||||||||||||||| Sbjct: 38977 ttttctttctcttctccttc 38958
>gb|AC091012.8| Homo sapiens chromosome 11, clone RP11-113A6, complete sequence Length = 145042 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 255 cttttctttctcttctccttctct 278 ||||||||||||||||| |||||| Sbjct: 64240 cttttctttctcttctctttctct 64263
>dbj|AP002485.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:P0491E01 Length = 136150 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 255 cttttctttctcttctccttctct 278 ||||||||| |||||||||||||| Sbjct: 80790 cttttctttttcttctccttctct 80813
>gb|AY703702.1| Nothomyrmecia macrops abdominal-A (abd-A) gene, exon 1 and partial cds Length = 597 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 316 ccgcctgctgctgctgatgatgat 293
>gb|AY703701.1| Myrmecia pyriformis abdominal-A (abd-A) gene, exon 1 and partial cds Length = 597 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 316 ccgcctgctgctgctgatgatgat 293
>gb|AY703699.1| Myrmecia picta abdominal-A (abd-A) gene, exon 1 and partial cds Length = 597 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 446 ccgcctggtgctgctgatgatgat 469 ||||||| |||||||||||||||| Sbjct: 316 ccgcctgctgctgctgatgatgat 293
>dbj|AP005725.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OSJNBa0025H18 Length = 176201 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 cttttctttctcttctccttctct 278 |||||||||||||||| ||||||| Sbjct: 111045 cttttctttctcttcttcttctct 111022
>emb|AJ000640.1|PSJ000640 Pisum sativum genomic DNA encoding the complete Ty3/Gypsy-like retroelement Cyclops-2 Length = 12314 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 ctggtgctgctgatgatgat 469 |||||||||||||||||||| Sbjct: 9140 ctggtgctgctgatgatgat 9159
>emb|AL117264.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0313F03, complete sequence Length = 131195 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 cttttctttctcttctcctt 274 |||||||||||||||||||| Sbjct: 109403 cttttctttctcttctcctt 109422
>gb|AE003490.3| Drosophila melanogaster chromosome X, section 42 of 74 of the complete sequence Length = 302665 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 ctggtgctgctgatgatgat 469 |||||||||||||||||||| Sbjct: 206479 ctggtgctgctgatgatgat 206498
>gb|AC115003.18| Mus musculus chromosome 6, clone RP24-179P9, complete sequence Length = 168290 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 255 cttttctttctcttctccttctct 278 |||||||||||||||||| ||||| Sbjct: 51939 cttttctttctcttctccatctct 51916
>gb|AC118544.7| Mus musculus strain C57BL/6J chromosome 5 clone rp23-287c8, complete sequence Length = 205079 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 actacttttctttctcttct 270 |||||||||||||||||||| Sbjct: 82044 actacttttctttctcttct 82025
>emb|AJ307662.1|OSA307662 Oryza sativa genomic DNA fragment, chromosome 2 Length = 339972 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 255 cttttctttctcttctccttctct 278 ||||||||| |||||||||||||| Sbjct: 71532 cttttctttttcttctccttctct 71555
>gb|AC002536.1|AC002536 Human Chromosome 11 pac pDJ1075f20, complete sequence Length = 140977 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 255 cttttctttctcttctccttctct 278 ||||||||||||||||| |||||| Sbjct: 102337 cttttctttctcttctctttctct 102360
>gb|AC124750.5| Mus musculus BAC clone RP23-273A20 from 8, complete sequence Length = 215042 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 tctttctcttctccttctct 278 |||||||||||||||||||| Sbjct: 117353 tctttctcttctccttctct 117334
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cattttgaaccccgaaaagt 116 |||||||||||||||||||| Sbjct: 1932558 cattttgaaccccgaaaagt 1932539
>gb|AC172892.1| Mus musculus BAC clone RP23-269B2 from chromosome 16, complete sequence Length = 206740 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 ttttctttctcttctccttc 275 |||||||||||||||||||| Sbjct: 138009 ttttctttctcttctccttc 137990
>gb|AC154884.15| Mus musculus chromosome 3, clone RP23-145H17, complete sequence Length = 231400 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 261 tttctcttctccttctctac 280 |||||||||||||||||||| Sbjct: 141517 tttctcttctccttctctac 141498
>emb|AL672297.7| Mouse DNA sequence from clone RP23-137E3 on chromosome X, complete sequence Length = 195519 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 tctttctcttctccttctct 278 |||||||||||||||||||| Sbjct: 59020 tctttctcttctccttctct 59039
>emb|AL161713.4|CNS01RHE Human chromosome 14 DNA sequence BAC R-22K10 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 157383 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 ttctttctcttctccttctc 277 |||||||||||||||||||| Sbjct: 26975 ttctttctcttctccttctc 26956
>emb|AL928966.3| Mouse DNA sequence from clone RP24-388A9 on chromosome 2, complete sequence Length = 173369 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 cttttctttctcttctcctt 274 |||||||||||||||||||| Sbjct: 95120 cttttctttctcttctcctt 95139
>gb|AC115043.10| Mus musculus chromosome 3, clone RP24-294N3, complete sequence Length = 150336 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 tttctcttctccttctctac 280 |||||||||||||||||||| Sbjct: 129667 tttctcttctccttctctac 129686 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,304,376 Number of Sequences: 3902068 Number of extensions: 4304376 Number of successful extensions: 111809 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 111424 Number of HSP's gapped (non-prelim): 385 length of query: 474 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 452 effective length of database: 17,147,199,772 effective search space: 7750534296944 effective search space used: 7750534296944 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
