ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RSE1_KLULA (Q6CXH8) Pre-mRNA-splicing factor RSE1 29 3.2
2VGLP_BEV (P23052) Peplomer glycoprotein precursor 28 5.5

>RSE1_KLULA (Q6CXH8) Pre-mRNA-splicing factor RSE1|
          Length = 1269

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 131  SSGI*RCLYLLDVIIQCYMHLTPSFYELVNYV 36
            +S I  C Y L+ +   YM+ TP  +E+VN++
Sbjct: 1086 ASNIKACQYTLETLCHMYMNDTPMKFEIVNHM 1117



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>VGLP_BEV (P23052) Peplomer glycoprotein precursor|
          Length = 1581

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -2

Query: 159 TVCYLKPLCLQWHLEMFVPS*CHNSVLYAPDAIF 58
           T+C+  P         FV   C+N+ LY PDA+F
Sbjct: 334 TLCFGSPF--------FVAQECYNNALYLPDAVF 359


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,873,428
Number of Sequences: 219361
Number of extensions: 874989
Number of successful extensions: 2106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2106
length of database: 80,573,946
effective HSP length: 96
effective length of database: 59,515,290
effective search space used: 1428366960
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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