>gb|AY532593.1| Triticum aestivum minichromosomal maintenance factor (MCM2) gene,
            exons 1 through 18 and complete sequence
          Length = 8809

 Score =  218 bits (110), Expect = 9e-54
 Identities = 162/178 (91%), Gaps = 1/178 (0%)
 Strand = Plus / Minus

                                                                        
Query: 61   gatggcgtcaggtgcatataacactgaattatgacatcaagaaggtacaaacatctctaa 120
            ||||||||||| | |||| ||||||||||||||| |||||||||||||| ||||||| ||
Sbjct: 8259 gatggcgtcagttccata-aacactgaattatgatatcaagaaggtacagacatctcgaa 8201

                                                                        
Query: 121  atgccactggaggcacaagggtttcagatagcaaacagtacaccaacaccagaattcccg 180
            ||||| ||| |||||||||||||||||||||||||||||||||||| | ||||| || | 
Sbjct: 8200 atgccgctgtaggcacaagggtttcagatagcaaacagtacaccaatatcagaactctca 8141

                                                                      
Query: 181  taaaacagacacgagcagtcattttgccaacttacactacaagtggacatttctagct 238
             ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 8140 caaaacagacacaagcagtcattttgccgacttacactacaagtggacatttctagct 8083



 Score =  147 bits (74), Expect = 3e-32
 Identities = 91/97 (93%)
 Strand = Plus / Minus

                                                                        
Query: 268  gctgaggttgattgagttgttatgctgctactggatgcttgatgatcccacgcccttcat 327
            ||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
Sbjct: 8041 gctgatgttgattgagttgttatgctgcaactggatgcctgatgatcccacgcccttcgt 7982

                                                 
Query: 328  ccaggacaaagctgttgtcgntgaagtgagagctgga 364
            ||||||| |||||||||||| ||||||||||||||||
Sbjct: 7981 ccaggacgaagctgttgtcgctgaagtgagagctgga 7945



 Score = 46.1 bits (23), Expect = 0.078
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 249  gctcttgaacaaagaggtagctg 271
            |||||||||||||||||||||||
Sbjct: 8085 gctcttgaacaaagaggtagctg 8063

>gb|AY532594.1| Triticum aestivum minichromosomal maintenance factor (MCM2) mRNA,
            complete cds
          Length = 2923

 Score =  133 bits (67), Expect = 4e-28
 Identities = 87/94 (92%)
 Strand = Plus / Minus

                                                                        
Query: 271  gaggttgattgagttgttatgctgctactggatgcttgatgatcccacgcccttcatcca 330
            ||||| |||||||||||||||| || ||||||||| |||||||||||||||||||||| |
Sbjct: 2923 gaggtcgattgagttgttatgccgcaactggatgcctgatgatcccacgcccttcatcga 2864

                                              
Query: 331  ggacaaagctgttgtcgntgaagtgagagctgga 364
            ||||||||||||||||  ||||||||||||||||
Sbjct: 2863 ggacaaagctgttgtcactgaagtgagagctgga 2830

>gb|AY109731.1| Zea mays CL9169_1 mRNA sequence
          Length = 623

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 32/33 (96%)
 Strand = Plus / Plus

                                            
Query: 299 tggatgcttgatgatcccacgcccttcatccag 331
           ||||||| |||||||||||||||||||||||||
Sbjct: 178 tggatgcctgatgatcccacgcccttcatccag 210

>ref|XM_721185.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05768)
            partial mRNA
          Length = 3083

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 25   caaaagtaaaaaacataattcacca 49
            ||||| |||||||||||||||||||
Sbjct: 1974 caaaaataaaaaacataattcacca 1998

>gb|AC102105.8| Mus musculus chromosome 12, clone RP23-89G24, complete sequence
          Length = 188853

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 259    aaagaggtagctgaggttgat 279
              |||||||||||||||||||||
Sbjct: 103298 aaagaggtagctgaggttgat 103318

>gb|AC137849.11| Mus musculus chromosome 1, clone RP24-124J24, complete sequence
          Length = 178764

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   cttcatccaggacaaagctg 341
             ||||||||||||||||||||
Sbjct: 21112 cttcatccaggacaaagctg 21093

>ref|XM_865922.1| PREDICTED: Bos taurus similar to Actin-binding LIM protein 3
            (Actin-binding LIM protein family member 3) (abLIM3),
            transcript variant 1 (LOC613794), mRNA
          Length = 3699

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 227  acatttctagctgcatcacc 246
            ||||||||||||||||||||
Sbjct: 2139 acatttctagctgcatcacc 2120

>ref|XM_877281.1| PREDICTED: Bos taurus similar to Actin-binding LIM protein 3
            (Actin-binding LIM protein family member 3) (abLIM3),
            transcript variant 2 (LOC613794), mRNA
          Length = 3209

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 227  acatttctagctgcatcacc 246
            ||||||||||||||||||||
Sbjct: 1649 acatttctagctgcatcacc 1630

>gb|AC100531.15| Mus musculus chromosome 1, clone RP23-147I4, complete sequence
          Length = 202351

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 322   cttcatccaggacaaagctg 341
             ||||||||||||||||||||
Sbjct: 33699 cttcatccaggacaaagctg 33718

>gb|AC142351.1| Pan troglodytes BAC clone RP43-21J15 from 7, complete sequence
          Length = 159635

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    aaacatctctaaatgccact 128
              ||||||||||||||||||||
Sbjct: 104407 aaacatctctaaatgccact 104388

>emb|AL365203.19| Human DNA sequence from clone RP11-479G22 on chromosome 10 Contains the
             3' end of a novel gene (FLJ13031) (FLJ40349), the ITGB1
             gene for integrin beta 1 (fibronectin receptor beta
             polypeptide antigen CD29 includes MDF2 MSK12), an
             adenylate kinase 3 like 1 (AK3L1) pseudogene, a novel
             gene, the 5' end of a novel gene, a NADH dehydrogenase
             subunit 4L (ND4L) pseudogene, a pseudogene similar to part
             of integrin beta 2 (antigen CD18 (p95) lymphocyte
             function-associated antigen 1; macrophage antigen 1
             (mac-1) beta subunit) (ITGB2) and a CpG island, complete
             sequence
          Length = 197973

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   ggaggcacaagggtttcaga 148
             ||||||||||||||||||||
Sbjct: 92711 ggaggcacaagggtttcaga 92692

>gb|AC103949.6| Homo sapiens chromosome 18, clone RP11-671P2, complete sequence
          Length = 177301

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 109    aaacatctctaaatgccact 128
              ||||||||||||||||||||
Sbjct: 117250 aaacatctctaaatgccact 117231

>gb|AC026839.7| Homo sapiens chromosome 5, clone RP11-186B13, complete sequence
          Length = 156721

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   aaacatctctaaatgccact 128
             ||||||||||||||||||||
Sbjct: 25257 aaacatctctaaatgccact 25276

>gb|AC108022.3| Homo sapiens BAC clone RP11-9D8 from 4, complete sequence
          Length = 162609

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 68    tcaggtgcatataacactga 87
             ||||||||||||||||||||
Sbjct: 18559 tcaggtgcatataacactga 18578

>dbj|AP000040.1| Homo sapiens genomic DNA, chromosome 21q22.1, segment 11/28, complete
             sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   tgctgctactggatgcttga 309
             ||||||||||||||||||||
Sbjct: 14249 tgctgctactggatgcttga 14268

>gb|AC090059.9| Homo sapiens 12 BAC RP11-604C20 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 130125

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    ataatgattgtcccaaaagt 31
             ||||||||||||||||||||
Sbjct: 45587 ataatgattgtcccaaaagt 45606

>emb|AL954212.1| Pan troglodytes chromosome 22 clone RP43-043L10 map 22q22.11, complete
             sequence
          Length = 192328

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   tgctgctactggatgcttga 309
             ||||||||||||||||||||
Sbjct: 50412 tgctgctactggatgcttga 50431

>dbj|AP001715.1| Homo sapiens genomic DNA, chromosome 21q, section 59/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 290    tgctgctactggatgcttga 309
              ||||||||||||||||||||
Sbjct: 179399 tgctgctactggatgcttga 179418

>dbj|AB056778.1| Macaca fascicularis brain cDNA clone:QccE-21094, full insert
           sequence
          Length = 1550

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 255 gaacaaagaggtagctgagg 274
           ||||||||||||||||||||
Sbjct: 727 gaacaaagaggtagctgagg 746

>dbj|AP000281.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region,
             clone:T1588, complete sequence
          Length = 66129

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   tgctgctactggatgcttga 309
             ||||||||||||||||||||
Sbjct: 58308 tgctgctactggatgcttga 58327

>dbj|AP000184.1| Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
             Q78C10-f32E9, segment 11/21, complete sequence
          Length = 100000

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   tgctgctactggatgcttga 309
             ||||||||||||||||||||
Sbjct: 20225 tgctgctactggatgcttga 20244

>dbj|AP000108.1| Homo sapiens genomic DNA of 21q22.1, GART and AML related,
             Q78C10-149C3 region, segment 11/20
          Length = 100000

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   tgctgctactggatgcttga 309
             ||||||||||||||||||||
Sbjct: 20225 tgctgctactggatgcttga 20244


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,369,303
Number of Sequences: 3902068
Number of extensions: 3369303
Number of successful extensions: 64837
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 64808
Number of HSP's gapped (non-prelim): 29
length of query: 364
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 342
effective length of database: 17,147,199,772
effective search space: 5864342322024
effective search space used: 5864342322024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)