ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39b01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC... 71 6e-13
2LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC... 63 2e-10
3LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12) 36 0.030
4LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC... 33 0.19
5LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13... 32 0.43
6LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12) 31 0.96
7LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1... 31 0.96
8LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precur... 31 0.96
9LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12) 30 1.6
10LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12) 30 2.1
11LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94) 30 2.1
12LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12) 29 3.7
13LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12) 28 6.2
14LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12) 28 6.2
15LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12) 28 6.2
16Y463_CHRVO (Q7P0V2) UPF0341 protein CV_0463 28 8.2
17ACDE2_METTE (Q9C4Z3) Acetyl-CoA decarbonylase/synthase complex e... 28 8.2

>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)|
            (LOX-100) (LOX2:Hv:1)
          Length = 936

 Score = 71.2 bits (173), Expect = 6e-13
 Identities = 36/41 (87%), Positives = 36/41 (87%), Gaps = 5/41 (12%)
 Frame = -1

Query: 251  RHGAGMVPYVLLRPSDGDPTD-----EKMVMEMGIPNSISI 144
            RHGAGMVPYVLLRPSDGDPTD     EKMVMEMGIPNSISI
Sbjct: 896  RHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936



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>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)|
            (LOX2:Hv:2)
          Length = 932

 Score = 62.8 bits (151), Expect = 2e-10
 Identities = 29/36 (80%), Positives = 32/36 (88%)
 Frame = -1

Query: 251  RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144
            RHGAG+VPYVLLRP +G+P D K VMEMGIPNSISI
Sbjct: 897  RHGAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932



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>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)|
          Length = 877

 Score = 35.8 bits (81), Expect = 0.030
 Identities = 20/38 (52%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
 Frame = -1

Query: 251 RHGAGMVPYVLLRPSDGDPTDEK--MVMEMGIPNSISI 144
           R+G   +PY+LL P+  D T EK   +  MGIPNSISI
Sbjct: 840 RNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877



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>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)|
           (LOX2:Hv:3)
          Length = 896

 Score = 33.1 bits (74), Expect = 0.19
 Identities = 20/36 (55%), Positives = 22/36 (61%)
 Frame = -1

Query: 251 RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144
           R GAG+VPY LL+     P  E  V   GIPNSISI
Sbjct: 866 RCGAGIVPYELLK-----PFSEPGVTGRGIPNSISI 896



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>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)|
          Length = 896

 Score = 32.0 bits (71), Expect = 0.43
 Identities = 19/36 (52%), Positives = 22/36 (61%)
 Frame = -1

Query: 251 RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144
           R GAG+V Y LL+P     T E  V  MG+P SISI
Sbjct: 866 RAGAGVVKYELLKP-----TSEHGVTGMGVPYSISI 896



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>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)|
          Length = 866

 Score = 30.8 bits (68), Expect = 0.96
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -1

Query: 251 RHGAGMVPYVLLRPSDGDPTDEKM-VMEMGIPNSISI 144
           R+G    PY+LL P+  D T     +   GIPNSISI
Sbjct: 830 RNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866



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>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)|
          Length = 924

 Score = 30.8 bits (68), Expect = 0.96
 Identities = 17/36 (47%), Positives = 22/36 (61%)
 Frame = -1

Query: 251 RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144
           R GAG++PY L++     P  +  V  MGIPNS SI
Sbjct: 894 RCGAGILPYQLMK-----PFSDSGVTGMGIPNSTSI 924



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>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC|
            1.13.11.12)
          Length = 941

 Score = 30.8 bits (68), Expect = 0.96
 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
 Frame = -1

Query: 251  RHGAGMVPYVLLRP-SDGDPTDEKMVMEMGIPNSISI 144
            R GAG++PY L++P SD   T       MGIPNS SI
Sbjct: 911  RCGAGILPYQLMKPFSDAGVTG------MGIPNSTSI 941



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>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)|
          Length = 899

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -1

Query: 251 RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144
           R GAG++PY L+ PS G       +   G+PNS++I
Sbjct: 869 RCGAGVLPYELMAPSSGPG-----ITCRGVPNSVTI 899



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>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)|
          Length = 918

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = -1

Query: 251 RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144
           R GAG++PY LL PS         V   G+PNSISI
Sbjct: 888 RCGAGVLPYELLAPS-----SPPGVTCRGVPNSISI 918



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>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)|
          Length = 853

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = -1

Query: 251 RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144
           R+G   +PY LL PS      E+ +   GIPNSISI
Sbjct: 823 RYGPAKMPYTLLYPSS-----EEGLTFRGIPNSISI 853



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>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)|
          Length = 861

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = -1

Query: 251 RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144
           RHG   +PY LL PS      ++ +   GIPNSISI
Sbjct: 831 RHGPVEMPYTLLYPS-----SKEGLTFRGIPNSISI 861



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>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)|
          Length = 862

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 251 RHGAGMVPYVLLRPSDGDPTDEKM-VMEMGIPNSISI 144
           R+G    PY+LL P+  D       +   GIPNSISI
Sbjct: 826 RNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862



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>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)|
          Length = 866

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = -1

Query: 251 RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144
           R+G   +PY LL PS      E+ +   GIPNSISI
Sbjct: 836 RYGPVKMPYTLLYPSS-----EEGLTCRGIPNSISI 866



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>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)|
          Length = 859

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = -1

Query: 251 RHGAGMVPYVLLRPSDGDPTDEKMVMEMGIPNSISI 144
           R G   VPY LL P     T E+ +   GIPNS+SI
Sbjct: 829 RSGPVNVPYTLLFP-----TSEEGLTGKGIPNSVSI 859



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>Y463_CHRVO (Q7P0V2) UPF0341 protein CV_0463|
          Length = 258

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -3

Query: 249 TRRRHGAVCAAQAVGR*SHGREDGDGDGHP 160
           T  +HGAV A    G   H RE G G G P
Sbjct: 50  TTGKHGAVYAEFVEGAARHRREQGGGRGQP 79



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>ACDE2_METTE (Q9C4Z3) Acetyl-CoA decarbonylase/synthase complex epsilon subunit|
           2 (ACDS complex epsilon subunit 2)
          Length = 170

 Score = 27.7 bits (60), Expect = 8.2
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -1

Query: 80  WPGGGYNGNEHQIIIKGHDDIYI 12
           WPG   NGN   II+ GH   YI
Sbjct: 99  WPGLDGNGNYDTIILLGHKKYYI 121


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,512,460
Number of Sequences: 219361
Number of extensions: 773980
Number of successful extensions: 2024
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2005
length of database: 80,573,946
effective HSP length: 59
effective length of database: 67,631,647
effective search space used: 1623159528
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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