Clone Name | rbastl39a09 |
---|---|
Clone Library Name | barley_pub |
>gb|AC009308.3| Homo sapiens BAC clone RP11-299P22 from 7, complete sequence Length = 108182 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 122 ctacatactagaacattcttcc 143 |||||||||||||||||||||| Sbjct: 100551 ctacatactagaacattcttcc 100572
>gb|AC146586.2| Medicago truncatula clone mth2-71m12, complete sequence Length = 109629 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 caagtggtacagcaatgttct 120 ||||||||||||||||||||| Sbjct: 13069 caagtggtacagcaatgttct 13049 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 caagtggtacagcaatgttct 120 ||||||||||||||||||||| Sbjct: 5273 caagtggtacagcaatgttct 5253
>gb|AC162161.9| Medicago truncatula clone mth2-2g22, complete sequence Length = 109841 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 caagtggtacagcaatgttct 120 ||||||||||||||||||||| Sbjct: 18206 caagtggtacagcaatgttct 18226 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 100 caagtggtacagcaatgttct 120 ||||||||||||||||||||| Sbjct: 10410 caagtggtacagcaatgttct 10430
>gb|AC034154.6| Homo sapiens BAC clone RP11-242D9 from 4, complete sequence Length = 210563 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 381 agtaagatgttatccaagttt 401 ||||||||||||||||||||| Sbjct: 103399 agtaagatgttatccaagttt 103379
>gb|AC068282.8| Homo sapiens BAC clone RP11-314L11 from 2, complete sequence Length = 205342 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 52 aaacaaacaataagtttgccg 72 ||||||||||||||||||||| Sbjct: 36803 aaacaaacaataagtttgccg 36823
>ref|NM_005040.2| Homo sapiens prolylcarboxypeptidase (angiotensinase C) (PRCP), transcript variant 1, mRNA Length = 2161 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 agggcgaaacggaggccagcagaa 230 ||||||||| |||||||||||||| Sbjct: 82 agggcgaaaaggaggccagcagaa 59
>ref|NM_199418.1| Homo sapiens prolylcarboxypeptidase (angiotensinase C) (PRCP), transcript variant 2, mRNA Length = 2222 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 207 agggcgaaacggaggccagcagaa 230 ||||||||| |||||||||||||| Sbjct: 82 agggcgaaaaggaggccagcagaa 59
>gb|AC146191.2| Pan troglodytes BAC clone RP43-25E3 from 7, complete sequence Length = 185364 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 acatactagaacattcttcc 143 |||||||||||||||||||| Sbjct: 160232 acatactagaacattcttcc 160251
>gb|BC057756.1| Xenopus laevis developmentally regulated GTP binding protein 2, mRNA (cDNA clone MGC:69136 IMAGE:5048399), complete cds Length = 1484 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 aagatgttatccaagttttc 403 |||||||||||||||||||| Sbjct: 1105 aagatgttatccaagttttc 1124
>ref|XM_764858.1| Giardia lamblia ATCC 50803 hypothetical protein (GLP_36_25958_28129) partial mRNA Length = 2172 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 tcatcaaatgcaatggaagg 277 |||||||||||||||||||| Sbjct: 628 tcatcaaatgcaatggaagg 609
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 229 aacaacggtaatgacatatt 248 |||||||||||||||||||| Sbjct: 2235199 aacaacggtaatgacatatt 2235180
>gb|AC119416.15| Medicago truncatula clone mth2-31m16, complete sequence Length = 120889 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 354 tctctagggtttaatgttttgttg 377 ||||||||||||||| |||||||| Sbjct: 34684 tctctagggtttaatattttgttg 34661
>gb|AC022399.15| Homo sapiens chromosome 10 clone RP11-4G18, complete sequence Length = 173064 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 agggcgaaacggaggccagcagaa 230 ||||||||| |||||||||||||| Sbjct: 46568 agggcgaaaaggaggccagcagaa 46591
>gb|AC080106.6| Homo sapiens chromosome 11, clone RP11-62J13, complete sequence Length = 157637 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 agggcgaaacggaggccagcagaa 230 ||||||||| |||||||||||||| Sbjct: 19970 agggcgaaaaggaggccagcagaa 19993
>ref|XM_687227.1| PREDICTED: Danio rerio similar to Uromodulin precursor (Tamm-Horsfall urinary glycoprotein) (THP) (LOC563868), mRNA Length = 1752 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 361 ggtttaatgttttgttggat 380 |||||||||||||||||||| Sbjct: 1085 ggtttaatgttttgttggat 1104
>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome Length = 5751492 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 taaatccgcgtcaaatataa 33 |||||||||||||||||||| Sbjct: 5638498 taaatccgcgtcaaatataa 5638479
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 tatgttgaaggacagcttcc 342 |||||||||||||||||||| Sbjct: 13239551 tatgttgaaggacagcttcc 13239532
>emb|BX088685.8| Zebrafish DNA sequence from clone CH211-206G7, complete sequence Length = 169155 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 tcagcttatacacatcactg 199 |||||||||||||||||||| Sbjct: 106507 tcagcttatacacatcactg 106526
>dbj|AP003793.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0487E11 Length = 151303 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 tatgttgaaggacagcttcc 342 |||||||||||||||||||| Sbjct: 111852 tatgttgaaggacagcttcc 111833
>dbj|AB104728.1| Xenopus laevis drg2 mRNA for developmentally regulated GTP-binding protein drg2, complete cds Length = 1425 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 aagatgttatccaagttttc 403 |||||||||||||||||||| Sbjct: 1091 aagatgttatccaagttttc 1110
>emb|BX120005.6| Zebrafish DNA sequence from clone RP71-56I13 in linkage group 10, complete sequence Length = 129782 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 ggtttaatgttttgttggat 380 |||||||||||||||||||| Sbjct: 5027 ggtttaatgttttgttggat 5008
>emb|BX640462.6| Zebrafish DNA sequence from clone CH211-153D8 in linkage group 24, complete sequence Length = 173882 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 tcagcttatacacatcactg 199 |||||||||||||||||||| Sbjct: 48556 tcagcttatacacatcactg 48575
>dbj|AP000893.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-659G9, complete sequence Length = 198024 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 agggcgaaacggaggccagcagaa 230 ||||||||| |||||||||||||| Sbjct: 46566 agggcgaaaaggaggccagcagaa 46589
>dbj|AP001646.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-718B12, complete sequence Length = 182329 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 207 agggcgaaacggaggccagcagaa 230 ||||||||| |||||||||||||| Sbjct: 139324 agggcgaaaaggaggccagcagaa 139347
>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome Length = 7215267 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 303 ggcgccggaaggacttcagg 322 |||||||||||||||||||| Sbjct: 6426755 ggcgccggaaggacttcagg 6426774
>gb|AC166106.3| Mus musculus BAC clone RP23-204F4 from chromosome 14, complete sequence Length = 191630 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 ataagtttgccgagcaatga 80 |||||||||||||||||||| Sbjct: 126188 ataagtttgccgagcaatga 126169 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,507,362 Number of Sequences: 3902068 Number of extensions: 3507362 Number of successful extensions: 57472 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 26 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57388 Number of HSP's gapped (non-prelim): 84 length of query: 415 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 393 effective length of database: 17,147,199,772 effective search space: 6738849510396 effective search space used: 6738849510396 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)