ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC009308.3| Homo sapiens BAC clone RP11-299P22 from 7, comple... 44 0.36
2gb|AC146586.2| Medicago truncatula clone mth2-71m12, complete se... 42 1.4
3gb|AC162161.9| Medicago truncatula clone mth2-2g22, complete seq... 42 1.4
4gb|AC034154.6| Homo sapiens BAC clone RP11-242D9 from 4, complet... 42 1.4
5gb|AC068282.8| Homo sapiens BAC clone RP11-314L11 from 2, comple... 42 1.4
6ref|NM_005040.2| Homo sapiens prolylcarboxypeptidase (angiotensi... 40 5.6
7ref|NM_199418.1| Homo sapiens prolylcarboxypeptidase (angiotensi... 40 5.6
8gb|AC146191.2| Pan troglodytes BAC clone RP43-25E3 from 7, compl... 40 5.6
9gb|BC057756.1| Xenopus laevis developmentally regulated GTP bind... 40 5.6
10ref|XM_764858.1| Giardia lamblia ATCC 50803 hypothetical protein... 40 5.6
11emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 5.6
12gb|AC119416.15| Medicago truncatula clone mth2-31m16, complete s... 40 5.6
13gb|AC022399.15| Homo sapiens chromosome 10 clone RP11-4G18, comp... 40 5.6
14gb|AC080106.6| Homo sapiens chromosome 11, clone RP11-62J13, com... 40 5.6
15ref|XM_687227.1| PREDICTED: Danio rerio similar to Uromodulin pr... 40 5.6
16gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 40 5.6
17dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
18emb|BX088685.8| Zebrafish DNA sequence from clone CH211-206G7, c... 40 5.6
19dbj|AP003793.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.6
20dbj|AB104728.1| Xenopus laevis drg2 mRNA for developmentally reg... 40 5.6
21emb|BX120005.6| Zebrafish DNA sequence from clone RP71-56I13 in ... 40 5.6
22emb|BX640462.6| Zebrafish DNA sequence from clone CH211-153D8 in... 40 5.6
23dbj|AP000893.5| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 5.6
24dbj|AP001646.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.6
25gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 5.6
26gb|AC166106.3| Mus musculus BAC clone RP23-204F4 from chromosome... 40 5.6

>gb|AC009308.3| Homo sapiens BAC clone RP11-299P22 from 7, complete sequence
          Length = 108182

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 122    ctacatactagaacattcttcc 143
              ||||||||||||||||||||||
Sbjct: 100551 ctacatactagaacattcttcc 100572



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>gb|AC146586.2| Medicago truncatula clone mth2-71m12, complete sequence
          Length = 109629

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 100   caagtggtacagcaatgttct 120
             |||||||||||||||||||||
Sbjct: 13069 caagtggtacagcaatgttct 13049



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 100  caagtggtacagcaatgttct 120
            |||||||||||||||||||||
Sbjct: 5273 caagtggtacagcaatgttct 5253



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>gb|AC162161.9| Medicago truncatula clone mth2-2g22, complete sequence
          Length = 109841

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   caagtggtacagcaatgttct 120
             |||||||||||||||||||||
Sbjct: 18206 caagtggtacagcaatgttct 18226



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 100   caagtggtacagcaatgttct 120
             |||||||||||||||||||||
Sbjct: 10410 caagtggtacagcaatgttct 10430



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>gb|AC034154.6| Homo sapiens BAC clone RP11-242D9 from 4, complete sequence
          Length = 210563

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 381    agtaagatgttatccaagttt 401
              |||||||||||||||||||||
Sbjct: 103399 agtaagatgttatccaagttt 103379



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>gb|AC068282.8| Homo sapiens BAC clone RP11-314L11 from 2, complete sequence
          Length = 205342

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 52    aaacaaacaataagtttgccg 72
             |||||||||||||||||||||
Sbjct: 36803 aaacaaacaataagtttgccg 36823



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>ref|NM_005040.2| Homo sapiens prolylcarboxypeptidase (angiotensinase C) (PRCP),
           transcript variant 1, mRNA
          Length = 2161

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 207 agggcgaaacggaggccagcagaa 230
           ||||||||| ||||||||||||||
Sbjct: 82  agggcgaaaaggaggccagcagaa 59



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>ref|NM_199418.1| Homo sapiens prolylcarboxypeptidase (angiotensinase C) (PRCP),
           transcript variant 2, mRNA
          Length = 2222

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 207 agggcgaaacggaggccagcagaa 230
           ||||||||| ||||||||||||||
Sbjct: 82  agggcgaaaaggaggccagcagaa 59



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>gb|AC146191.2| Pan troglodytes BAC clone RP43-25E3 from 7, complete sequence
          Length = 185364

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 124    acatactagaacattcttcc 143
              ||||||||||||||||||||
Sbjct: 160232 acatactagaacattcttcc 160251



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>gb|BC057756.1| Xenopus laevis developmentally regulated GTP binding protein 2, mRNA
            (cDNA clone MGC:69136 IMAGE:5048399), complete cds
          Length = 1484

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 384  aagatgttatccaagttttc 403
            ||||||||||||||||||||
Sbjct: 1105 aagatgttatccaagttttc 1124



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>ref|XM_764858.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_36_25958_28129) partial mRNA
          Length = 2172

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 258 tcatcaaatgcaatggaagg 277
           ||||||||||||||||||||
Sbjct: 628 tcatcaaatgcaatggaagg 609



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>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2602197

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 229     aacaacggtaatgacatatt 248
               ||||||||||||||||||||
Sbjct: 2235199 aacaacggtaatgacatatt 2235180



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>gb|AC119416.15| Medicago truncatula clone mth2-31m16, complete sequence
          Length = 120889

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 354   tctctagggtttaatgttttgttg 377
             ||||||||||||||| ||||||||
Sbjct: 34684 tctctagggtttaatattttgttg 34661



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>gb|AC022399.15| Homo sapiens chromosome 10 clone RP11-4G18, complete sequence
          Length = 173064

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 207   agggcgaaacggaggccagcagaa 230
             ||||||||| ||||||||||||||
Sbjct: 46568 agggcgaaaaggaggccagcagaa 46591



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>gb|AC080106.6| Homo sapiens chromosome 11, clone RP11-62J13, complete sequence
          Length = 157637

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 207   agggcgaaacggaggccagcagaa 230
             ||||||||| ||||||||||||||
Sbjct: 19970 agggcgaaaaggaggccagcagaa 19993



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>ref|XM_687227.1| PREDICTED: Danio rerio similar to Uromodulin precursor (Tamm-Horsfall
            urinary glycoprotein) (THP) (LOC563868), mRNA
          Length = 1752

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 361  ggtttaatgttttgttggat 380
            ||||||||||||||||||||
Sbjct: 1085 ggtttaatgttttgttggat 1104



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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 14      taaatccgcgtcaaatataa 33
               ||||||||||||||||||||
Sbjct: 5638498 taaatccgcgtcaaatataa 5638479



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 323      tatgttgaaggacagcttcc 342
                ||||||||||||||||||||
Sbjct: 13239551 tatgttgaaggacagcttcc 13239532



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>emb|BX088685.8| Zebrafish DNA sequence from clone CH211-206G7, complete sequence
          Length = 169155

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    tcagcttatacacatcactg 199
              ||||||||||||||||||||
Sbjct: 106507 tcagcttatacacatcactg 106526



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>dbj|AP003793.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0487E11
          Length = 151303

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    tatgttgaaggacagcttcc 342
              ||||||||||||||||||||
Sbjct: 111852 tatgttgaaggacagcttcc 111833



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>dbj|AB104728.1| Xenopus laevis drg2 mRNA for developmentally regulated GTP-binding
            protein drg2, complete cds
          Length = 1425

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 384  aagatgttatccaagttttc 403
            ||||||||||||||||||||
Sbjct: 1091 aagatgttatccaagttttc 1110



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>emb|BX120005.6| Zebrafish DNA sequence from clone RP71-56I13 in linkage group 10,
            complete sequence
          Length = 129782

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 361  ggtttaatgttttgttggat 380
            ||||||||||||||||||||
Sbjct: 5027 ggtttaatgttttgttggat 5008



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>emb|BX640462.6| Zebrafish DNA sequence from clone CH211-153D8 in linkage group 24,
             complete sequence
          Length = 173882

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 180   tcagcttatacacatcactg 199
             ||||||||||||||||||||
Sbjct: 48556 tcagcttatacacatcactg 48575



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>dbj|AP000893.5| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-659G9, complete
             sequence
          Length = 198024

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 207   agggcgaaacggaggccagcagaa 230
             ||||||||| ||||||||||||||
Sbjct: 46566 agggcgaaaaggaggccagcagaa 46589



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>dbj|AP001646.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-718B12, complete
              sequence
          Length = 182329

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 207    agggcgaaacggaggccagcagaa 230
              ||||||||| ||||||||||||||
Sbjct: 139324 agggcgaaaaggaggccagcagaa 139347



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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 303     ggcgccggaaggacttcagg 322
               ||||||||||||||||||||
Sbjct: 6426755 ggcgccggaaggacttcagg 6426774



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>gb|AC166106.3| Mus musculus BAC clone RP23-204F4 from chromosome 14, complete sequence
          Length = 191630

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 61     ataagtttgccgagcaatga 80
              ||||||||||||||||||||
Sbjct: 126188 ataagtttgccgagcaatga 126169


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,507,362
Number of Sequences: 3902068
Number of extensions: 3507362
Number of successful extensions: 57472
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57388
Number of HSP's gapped (non-prelim): 84
length of query: 415
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 393
effective length of database: 17,147,199,772
effective search space: 6738849510396
effective search space used: 6738849510396
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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