ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GNL3_XENTR (Q6P4W5) Guanine nucleotide-binding protein-like 3 (N... 29 3.2
2TNF10_HUMAN (P50591) Tumor necrosis factor ligand superfamily me... 28 4.1
3YPUB_KLEPN (P20775) Hypothetical protein in pulS 3'region (Fragm... 28 5.4
4WRB_MOUSE (Q8K0D7) Tryptophan-rich protein 28 7.0
5WRB_PONPY (Q5R6K7) Tryptophan-rich protein 27 9.2
6WRB_HUMAN (O00258) Tryptophan-rich protein (Congenital heart dis... 27 9.2

>GNL3_XENTR (Q6P4W5) Guanine nucleotide-binding protein-like 3|
           (Nucleostemin-like protein)
          Length = 548

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 17/68 (25%), Positives = 28/68 (41%)
 Frame = +2

Query: 32  DVPSRRTACFTLAPSKTKGCRQKAMTGTKLCTEKMDPRPFLTRAVPHMRNDYSPNGCNLN 211
           ++P+    C   APSK+ G + K      LCTE   P   +   + H       +   + 
Sbjct: 192 ELPTVPFRCLPQAPSKSPGKKHKVPNTADLCTENRCPGGQVLLRILHSLCPSQSDAIKVG 251

Query: 212 LLFFCMVG 235
           ++ F  VG
Sbjct: 252 VIGFANVG 259



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>TNF10_HUMAN (P50591) Tumor necrosis factor ligand superfamily member 10|
           (TNF-related apoptosis-inducing ligand) (TRAIL protein)
           (Apo-2 ligand) (Apo-2L) (CD253 antigen)
          Length = 281

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 222 SAW*EIKSSHGYAKNLHVQNGDLM 293
           ++W   +S H +  NLH++NG+L+
Sbjct: 152 NSWESSRSGHSFLSNLHLRNGELV 175



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>YPUB_KLEPN (P20775) Hypothetical protein in pulS 3'region (Fragment)|
          Length = 142

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +3

Query: 42  PVGQLVLP*HPAKQKDVDRRR*REQNY 122
           P+G+   P  PAKQK V RRR RE++Y
Sbjct: 8   PIGRKGRPSRPAKQK-VTRRRVREEDY 33



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>WRB_MOUSE (Q8K0D7) Tryptophan-rich protein|
          Length = 174

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -2

Query: 182 RYACVVPRALETVWGPFFQCIILFPSSPSVYILLFCWVLR*NKLSYGTVHPFA 24
           +Y  V    + + W      ++ FP+  +  I + CW+L  NK+    +HPF+
Sbjct: 122 KYYSVPVAVVPSKWITPLDRLVAFPTRVAGGIGITCWILVCNKVVAIVLHPFS 174



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>WRB_PONPY (Q5R6K7) Tryptophan-rich protein|
          Length = 174

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -2

Query: 182 RYACVVPRALETVWGPFFQCIILFPSSPSVYILLFCWVLR*NKLSYGTVHPFA 24
           +Y  V    + + W      ++ FP+  +  + + CW+L  NK+    +HPF+
Sbjct: 122 KYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS 174



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>WRB_HUMAN (O00258) Tryptophan-rich protein (Congenital heart disease 5|
           protein)
          Length = 174

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -2

Query: 182 RYACVVPRALETVWGPFFQCIILFPSSPSVYILLFCWVLR*NKLSYGTVHPFA 24
           +Y  V    + + W      ++ FP+  +  + + CW+L  NK+    +HPF+
Sbjct: 122 KYYSVPVAVVPSKWITPLDRLVAFPTRVAGGVGITCWILVCNKVVAIVLHPFS 174


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,750,721
Number of Sequences: 219361
Number of extensions: 1070849
Number of successful extensions: 2241
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2241
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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