ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39a05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 117 3e-23
2dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
3dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
4dbj|AK060837.1| Oryza sativa (japonica cultivar-group) cDNA clon... 117 3e-23
5emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 117 3e-23
6gb|AY103815.1| Zea mays PCO096873 mRNA sequence 50 0.005
7gb|BT019203.1| Zea mays clone Contig876.F mRNA sequence 46 0.082
8gb|BT018365.1| Zea mays clone EL01N0311E09.c mRNA sequence 46 0.082
9gb|AY491010.1| Leishmania major Hut1L protein (Hut1L) gene, comp... 42 1.3
10gb|AC040975.8| Homo sapiens chromosome 8, clone RP11-662B19, com... 42 1.3
11gb|AC121303.24| Mus musculus chromosome 8, clone RP23-335A5, com... 40 5.1
12gb|AF384675.1| Mus musculus FGF15 (Fgf15) gene, complete cds; BC... 40 5.1
13gb|BT018310.1| Zea mays clone EL01T0206H09.c mRNA sequence 40 5.1
14gb|AC139569.3| Mus musculus BAC clone RP24-340F13 from chromosom... 40 5.1
15gb|AC121797.3| Mus musculus BAC clone RP23-424C23 from chromosom... 40 5.1
16emb|AL590426.6| Human DNA sequence from clone RP11-354K4 on chro... 40 5.1
17gb|AC162183.4| Mus musculus BAC clone RP23-27I10 from chromosome... 40 5.1
18emb|CR450779.7| Zebrafish DNA sequence from clone CH211-258C22 i... 40 5.1
19gb|AC161763.3| Mus musculus BAC clone RP23-294B14 from chromosom... 40 5.1
20dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 5.1
21emb|BX322651.3| Zebrafish DNA sequence from clone DKEYP-32G10, c... 40 5.1
22gb|AY104202.1| Zea mays PCO125624 mRNA sequence 40 5.1
23dbj|AB023293.1| Bacillus thuringiensis gene for 94kDa mosquitoci... 40 5.1 
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  117 bits (59), Expect = 3e-23
 Identities = 101/115 (87%)
 Strand = Plus / Minus

                                                                            
Query: 267      ctacacgttcaaaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 326
                ||||| |||||||| || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 19193103 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 19193044

                                                                       
Query: 327      gtttgctcctgcacatggacagtgtaaaaacctgtagctgtggctgcagatgggg 381
                |||||||||||||||||||| | ||| |||||||| || ||||||||||||||||
Sbjct: 19193043 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatgggg 19192989



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 182      gattattcaccaaatggctg 201
                ||||||||||||||||||||
Sbjct: 19193185 gattattcaccaaatggctg 19193166
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>dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N21, full
            insert sequence
          Length = 3612

 Score =  117 bits (59), Expect = 3e-23
 Identities = 101/115 (87%)
 Strand = Plus / Minus

                                                                        
Query: 267  ctacacgttcaaaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 326
            ||||| |||||||| || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 3333 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 3274

                                                                   
Query: 327  gtttgctcctgcacatggacagtgtaaaaacctgtagctgtggctgcagatgggg 381
            |||||||||||||||||||| | ||| |||||||| || ||||||||||||||||
Sbjct: 3273 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatgggg 3219



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  gattattcaccaaatggctg 201
            ||||||||||||||||||||
Sbjct: 3415 gattattcaccaaatggctg 3396
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>dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O03, full
            insert sequence
          Length = 3581

 Score =  117 bits (59), Expect = 3e-23
 Identities = 101/115 (87%)
 Strand = Plus / Minus

                                                                        
Query: 267  ctacacgttcaaaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 326
            ||||| |||||||| || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 3379 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 3320

                                                                   
Query: 327  gtttgctcctgcacatggacagtgtaaaaacctgtagctgtggctgcagatgggg 381
            |||||||||||||||||||| | ||| |||||||| || ||||||||||||||||
Sbjct: 3319 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatgggg 3265



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  gattattcaccaaatggctg 201
            ||||||||||||||||||||
Sbjct: 3461 gattattcaccaaatggctg 3442
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>dbj|AK060837.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C11, full
            insert sequence
          Length = 1546

 Score =  117 bits (59), Expect = 3e-23
 Identities = 101/115 (87%)
 Strand = Plus / Minus

                                                                        
Query: 267  ctacacgttcaaaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 326
            ||||| |||||||| || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 1314 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 1255

                                                                   
Query: 327  gtttgctcctgcacatggacagtgtaaaaacctgtagctgtggctgcagatgggg 381
            |||||||||||||||||||| | ||| |||||||| || ||||||||||||||||
Sbjct: 1254 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatgggg 1200



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 182  gattattcaccaaatggctg 201
            ||||||||||||||||||||
Sbjct: 1396 gattattcaccaaatggctg 1377
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>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
              complete sequence
          Length = 151936

 Score =  117 bits (59), Expect = 3e-23
 Identities = 101/115 (87%)
 Strand = Plus / Minus

                                                                          
Query: 267    ctacacgttcaaaacggggacttgatggggtctggctgcagcgccttcttcacgagctcg 326
              ||||| |||||||| || || ||||| |||||| ||||||| ||||||| ||| ||||||
Sbjct: 126625 ctacaggttcaaaatggagagttgatagggtctcgctgcagtgccttctgcacaagctcg 126566

                                                                     
Query: 327    gtttgctcctgcacatggacagtgtaaaaacctgtagctgtggctgcagatgggg 381
              |||||||||||||||||||| | ||| |||||||| || ||||||||||||||||
Sbjct: 126565 gtttgctcctgcacatggacggagtagaaacctgttgcggtggctgcagatgggg 126511



 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 182    gattattcaccaaatggctg 201
              ||||||||||||||||||||
Sbjct: 126707 gattattcaccaaatggctg 126688
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>gb|AY103815.1| Zea mays PCO096873 mRNA sequence
          Length = 1431

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 46/53 (86%)
 Strand = Plus / Minus

                                                                 
Query: 288  ttgatggggtctggctgcagcgccttcttcacgagctcggtttgctcctgcac 340
            |||| ||||||  ||||||||||||||| ||| ||||| || |||||||||||
Sbjct: 1116 ttgagggggtcgcgctgcagcgccttctgcaccagctccgtctgctcctgcac 1064
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>gb|BT019203.1| Zea mays clone Contig876.F mRNA sequence
          Length = 703

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 274 ttcaaaacggggacttgatggggtctggctgcagcgccttcttcacgagctcggtttgct 333
           |||| |||||| | |||||||||||  ||||||| ||||| | ||| ||||| || ||||
Sbjct: 468 ttcagaacgggtagttgatggggtcgcgctgcagggccttttgcaccagctccgtctgct 409

                  
Query: 334 cctgcac 340
           |||||||
Sbjct: 408 cctgcac 402
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>gb|BT018365.1| Zea mays clone EL01N0311E09.c mRNA sequence
          Length = 674

 Score = 46.1 bits (23), Expect = 0.082
 Identities = 56/67 (83%)
 Strand = Plus / Minus

                                                                       
Query: 274 ttcaaaacggggacttgatggggtctggctgcagcgccttcttcacgagctcggtttgct 333
           |||| |||||| | |||||||||||  ||||||| ||||| | ||| ||||| || ||||
Sbjct: 470 ttcagaacgggtagttgatggggtcgcgctgcagggccttttgcaccagctccgtctgct 411

                  
Query: 334 cctgcac 340
           |||||||
Sbjct: 410 cctgcac 404
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>gb|AY491010.1| Leishmania major Hut1L protein (Hut1L) gene, complete cds
          Length = 1732

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 153 taacgcgcgcggtaccacaca 173
           |||||||||||||||||||||
Sbjct: 675 taacgcgcgcggtaccacaca 655
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>gb|AC040975.8| Homo sapiens chromosome 8, clone RP11-662B19, complete sequence
          Length = 199112

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 204   atttaaacctgttgtttttct 224
             |||||||||||||||||||||
Sbjct: 47832 atttaaacctgttgtttttct 47812
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>gb|AC121303.24| Mus musculus chromosome 8, clone RP23-335A5, complete sequence
          Length = 205158

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 335    ctgcacatggacagtgtaaaaacc 358
              |||||||| |||||||||||||||
Sbjct: 166554 ctgcacatagacagtgtaaaaacc 166577
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>gb|AF384675.1| Mus musculus FGF15 (Fgf15) gene, complete cds; BC1 scRNA gene, complete
             sequence; hypothetical protein and cyclin D1 (Ccnd1)
             genes, complete cds
          Length = 154480

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 77    aaaacaaaaggatgtagacagaag 100
             ||||||||||||||||| ||||||
Sbjct: 67852 aaaacaaaaggatgtaggcagaag 67875
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>gb|BT018310.1| Zea mays clone EL01T0206H09.c mRNA sequence
          Length = 817

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                   
Query: 288 ttgatggggtctggctgcagcgccttcttcacgagctcggtttgctcctgcacatg 343
           ||||| || |||| |||||| ||||||||||| ||||| |  ||||||||| ||||
Sbjct: 643 ttgatcggctctgcctgcagtgccttcttcactagctctgactgctcctgcgcatg 588
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>gb|AC139569.3| Mus musculus BAC clone RP24-340F13 from chromosome 14, complete sequence
          Length = 173736

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 74     agcaaaacaaaaggatgtagacag 97
              ||||||||||||||||||| ||||
Sbjct: 122474 agcaaaacaaaaggatgtaaacag 122451
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>gb|AC121797.3| Mus musculus BAC clone RP23-424C23 from chromosome 3, complete sequence
          Length = 177109

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     tgggtacagttctttattgg 25
             ||||||||||||||||||||
Sbjct: 61035 tgggtacagttctttattgg 61016
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>emb|AL590426.6| Human DNA sequence from clone RP11-354K4 on chromosome 6 Contains novel
              pseudogene, complete sequence
          Length = 204235

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 248    tcatggctatgcaaagaacc 267
              ||||||||||||||||||||
Sbjct: 122766 tcatggctatgcaaagaacc 122747
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>gb|AC162183.4| Mus musculus BAC clone RP23-27I10 from chromosome 14, complete
            sequence
          Length = 225212

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 74   agcaaaacaaaaggatgtagacag 97
            ||||||||||||||||||| ||||
Sbjct: 5297 agcaaaacaaaaggatgtaaacag 5274
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>emb|CR450779.7| Zebrafish DNA sequence from clone CH211-258C22 in linkage group 5,
              complete sequence
          Length = 179980

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    aacaaaattatgcactgaaa 131
              ||||||||||||||||||||
Sbjct: 125048 aacaaaattatgcactgaaa 125029
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>gb|AC161763.3| Mus musculus BAC clone RP23-294B14 from chromosome 7, complete sequence
          Length = 221679

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 77    aaaacaaaaggatgtagacagaag 100
             ||||||||||||||||| ||||||
Sbjct: 63034 aaaacaaaaggatgtaggcagaag 63011
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>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 99     aggcgatgacgggaacaaaa 118
              ||||||||||||||||||||
Sbjct: 431604 aggcgatgacgggaacaaaa 431623
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>emb|BX322651.3| Zebrafish DNA sequence from clone DKEYP-32G10, complete sequence
          Length = 152913

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   aacaaaattatgcactgaaa 131
             ||||||||||||||||||||
Sbjct: 71960 aacaaaattatgcactgaaa 71979
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>gb|AY104202.1| Zea mays PCO125624 mRNA sequence
          Length = 1720

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 47/56 (83%)
 Strand = Plus / Minus

                                                                    
Query: 288  ttgatggggtctggctgcagcgccttcttcacgagctcggtttgctcctgcacatg 343
            ||||| || |||| |||||| ||||||||||| ||||| |  ||||||||| ||||
Sbjct: 1545 ttgatcggctctgcctgcagtgccttcttcactagctctgactgctcctgcgcatg 1490
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>dbj|AB023293.1| Bacillus thuringiensis gene for 94kDa mosquitocidal toxin, complete
            cds
          Length = 3190

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 198  gctgtaatttaaacctgttg 217
            ||||||||||||||||||||
Sbjct: 1905 gctgtaatttaaacctgttg 1886


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,643,334
Number of Sequences: 3902068
Number of extensions: 3643334
Number of successful extensions: 62547
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 62490
Number of HSP's gapped (non-prelim): 57
length of query: 381
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 359
effective length of database: 17,147,199,772
effective search space: 6155844718148
effective search space used: 6155844718148
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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