ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39a03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NOP14_SCHPO (O43051) Probable nucleolar complex protein 14 30 3.7

>NOP14_SCHPO (O43051) Probable nucleolar complex protein 14|
          Length = 827

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
 Frame = +3

Query: 102 KHVLNTETKPRDQHSILCHQSEPLHSISKQGPSLSHGSY-------SKRLRQTSAPPAIS 260
           +H+L+   +P     +L H +E LHS+++Q PS    S+        KRL ++   P I 
Sbjct: 463 QHILHLTRQPMISMELLEHLTEHLHSLAQQFPSALGISFISVVEGMRKRLAKSYVYPEIK 522

Query: 261 IGGGNISTAFCKISNYPFKGSSTFSLHVTRMVSVIVTSPVVKIVRGSI 404
                    F +IS+  F  + T S+  T     IV SPV+  +  S+
Sbjct: 523 ---------FPEISDLLF-FNLTGSIFPTSDKKHIVVSPVMLTMAESL 560


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,304,119
Number of Sequences: 219361
Number of extensions: 1318316
Number of successful extensions: 3631
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3631
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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