Clone Name | rbastl39a02 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK069115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008H02, full insert sequence Length = 2846 Score = 105 bits (53), Expect = 1e-19 Identities = 77/85 (90%) Strand = Plus / Minus Query: 354 tagtactcccagatacgcatgaacttatcatcaaagcccagggccaaaatttcatctttg 413 ||||||||||| |||| |||||||| ||||||||||||||||||||||||| |||||| Sbjct: 2569 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaattttatcttta 2510 Query: 414 ttgatcatgaagttgtccctccagc 438 ||| |||||||||||||||||||| Sbjct: 2509 ttggccatgaagttgtccctccagc 2485 Score = 46.1 bits (23), Expect = 0.095 Identities = 32/35 (91%) Strand = Plus / Minus Query: 285 ggacgagagaaaacaacctggtaatctccaagtgt 319 ||||||||||| |||| |||||| ||||||||||| Sbjct: 2638 ggacgagagaatacaatctggtagtctccaagtgt 2604
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Minus Query: 354 tagtactcccagatacgcatgaacttatcatcaaagcccagggccaaaattt 405 ||||||||||| |||| |||||||| ||||||||||||||||||||||||| Sbjct: 9539455 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaattt 9539404 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 catgaagttgtccctccagc 438 |||||||||||||||||||| Sbjct: 9538984 catgaagttgtccctccagc 9538965
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Minus Query: 354 tagtactcccagatacgcatgaacttatcatcaaagcccagggccaaaattt 405 ||||||||||| |||| |||||||| ||||||||||||||||||||||||| Sbjct: 9539340 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaattt 9539289 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 catgaagttgtccctccagc 438 |||||||||||||||||||| Sbjct: 9538869 catgaagttgtccctccagc 9538850
>emb|AL713951.4|CNS07YPU Oryza sativa chromosome 12, . BAC OJ1111_C09 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 165137 Score = 71.9 bits (36), Expect = 2e-09 Identities = 48/52 (92%) Strand = Plus / Minus Query: 354 tagtactcccagatacgcatgaacttatcatcaaagcccagggccaaaattt 405 ||||||||||| |||| |||||||| ||||||||||||||||||||||||| Sbjct: 2766 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaattt 2715 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 419 catgaagttgtccctccagc 438 |||||||||||||||||||| Sbjct: 2295 catgaagttgtccctccagc 2276
>ref|XM_478073.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2397 Score = 54.0 bits (27), Expect = 4e-04 Identities = 96/119 (80%) Strand = Plus / Minus Query: 278 gttgcctggacgagagaaaacaacctggtaatctccaagtgttcgtgacttgaagcaaga 337 |||||| || ||||| || |||| |||||| | ||||||||| ||||||||||| | || Sbjct: 2343 gttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgacttgaacccagc 2284 Query: 338 cgcagagaatatgaggtagtactcccagatacgcatgaacttatcatcaaagcccaggg 396 || || |||||| ||||||||||| || || |||||||| ||||| || ||||||| Sbjct: 2283 tgcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaatcccaggg 2225
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 54.0 bits (27), Expect = 4e-04 Identities = 96/119 (80%) Strand = Plus / Minus Query: 278 gttgcctggacgagagaaaacaacctggtaatctccaagtgttcgtgacttgaagcaaga 337 |||||| || ||||| || |||| |||||| | ||||||||| ||||||||||| | || Sbjct: 17066588 gttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgacttgaacccagc 17066529 Query: 338 cgcagagaatatgaggtagtactcccagatacgcatgaacttatcatcaaagcccaggg 396 || || |||||| ||||||||||| || || |||||||| ||||| || ||||||| Sbjct: 17066528 tgcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaatcccaggg 17066470
>dbj|AP005181.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0016H06 Length = 148158 Score = 54.0 bits (27), Expect = 4e-04 Identities = 96/119 (80%) Strand = Plus / Minus Query: 278 gttgcctggacgagagaaaacaacctggtaatctccaagtgttcgtgacttgaagcaaga 337 |||||| || ||||| || |||| |||||| | ||||||||| ||||||||||| | || Sbjct: 145999 gttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgacttgaacccagc 145940 Query: 338 cgcagagaatatgaggtagtactcccagatacgcatgaacttatcatcaaagcccaggg 396 || || |||||| ||||||||||| || || |||||||| ||||| || ||||||| Sbjct: 145939 tgcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaatcccaggg 145881
>dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0571D04 Length = 149302 Score = 54.0 bits (27), Expect = 4e-04 Identities = 96/119 (80%) Strand = Plus / Minus Query: 278 gttgcctggacgagagaaaacaacctggtaatctccaagtgttcgtgacttgaagcaaga 337 |||||| || ||||| || |||| |||||| | ||||||||| ||||||||||| | || Sbjct: 19714 gttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgacttgaacccagc 19655 Query: 338 cgcagagaatatgaggtagtactcccagatacgcatgaacttatcatcaaagcccaggg 396 || || |||||| ||||||||||| || || |||||||| ||||| || ||||||| Sbjct: 19654 tgcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaatcccaggg 19596
>dbj|AK111684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169K10, full insert sequence Length = 1367 Score = 54.0 bits (27), Expect = 4e-04 Identities = 96/119 (80%) Strand = Plus / Minus Query: 278 gttgcctggacgagagaaaacaacctggtaatctccaagtgttcgtgacttgaagcaaga 337 |||||| || ||||| || |||| |||||| | ||||||||| ||||||||||| | || Sbjct: 1120 gttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgacttgaacccagc 1061 Query: 338 cgcagagaatatgaggtagtactcccagatacgcatgaacttatcatcaaagcccaggg 396 || || |||||| ||||||||||| || || |||||||| ||||| || ||||||| Sbjct: 1060 tgcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaatcccaggg 1002
>gb|AC168277.2| Mus musculus BAC RP24-186L17 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 155635 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 315 agtgttcgtgacttgaagcaag 336 |||||||||||||||||||||| Sbjct: 23175 agtgttcgtgacttgaagcaag 23154
>emb|AL359074.12| Human DNA sequence from clone RP11-137L10 on chromosome 10 Contains the 5' end of the PPP3CB gene for protein phosphatase 3 (formerly 2B) catalytic subunit beta isoform (calcineurin A beta), two novel genes (FLJ37318), the 3' end of a novel gene, a ribosomal protein S26 (RPS26) pseudogene and a CpG island, complete sequence Length = 152161 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 294 aaaacaacctggtaatctccaa 315 |||||||||||||||||||||| Sbjct: 43260 aaaacaacctggtaatctccaa 43281
>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome Length = 3523383 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 151 attattggcaaatacgtagaaa 172 |||||||||||||||||||||| Sbjct: 1240784 attattggcaaatacgtagaaa 1240805
>gb|AC073389.10| Homo sapiens chromosome 10 clone RP11-464F9, complete sequence Length = 190681 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 294 aaaacaacctggtaatctccaa 315 |||||||||||||||||||||| Sbjct: 177522 aaaacaacctggtaatctccaa 177501
>gb|AC153601.6| Mus musculus 6 BAC RP23-405O6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 201911 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Minus Query: 315 agtgttcgtgacttgaagcaag 336 |||||||||||||||||||||| Sbjct: 91276 agtgttcgtgacttgaagcaag 91255
>emb|AL929447.7| Mouse DNA sequence from clone RP23-360O17 on chromosome 4, complete sequence Length = 36704 Score = 44.1 bits (22), Expect = 0.38 Identities = 32/34 (94%), Gaps = 1/34 (2%) Strand = Plus / Minus Query: 402 atttcatctttgttgatcatgaagttgtccctcc 435 |||||||||||| ||||||||||| ||||||||| Sbjct: 23235 atttcatctttgatgatcatgaag-tgtccctcc 23203
>emb|CR751602.12| Zebrafish DNA sequence from clone DKEYP-10A3 in linkage group 5, complete sequence Length = 65729 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 31 aaataaagatacaataccatgcaat 55 ||||||||||||||||| ||||||| Sbjct: 34685 aaataaagatacaatacaatgcaat 34709
>emb|AL121718.8|HSJ390M24 Human DNA sequence from clone RP3-390M24 on chromosome 6 Contains part of a novel gene, complete sequence Length = 73095 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 ggccaaaatttcatctttgtt 415 ||||||||||||||||||||| Sbjct: 17913 ggccaaaatttcatctttgtt 17933
>gb|AC116697.7| Mus musculus chromosome 3, clone RP24-444C12, complete sequence Length = 183146 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 397 ccaaaatttcatctttgttg 416 |||||||||||||||||||| Sbjct: 77402 ccaaaatttcatctttgttg 77383
>gb|AC122541.3| Mus musculus BAC clone RP24-567D4 from chromosome 5, complete sequence Length = 166883 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 aagcaaaggtggaacaggct 198 |||||||||||||||||||| Sbjct: 148839 aagcaaaggtggaacaggct 148858
>gb|AC138679.10| Mus musculus chromosome 5, clone RP23-177I4, complete sequence Length = 230184 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 aagcaaaggtggaacaggct 198 |||||||||||||||||||| Sbjct: 206193 aagcaaaggtggaacaggct 206174
>gb|AC146076.2| Pan troglodytes BAC clone RP43-15J5 from 7, complete sequence Length = 161297 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 392 cagggccaaaatttcatctttgtt 415 ||||||||||||||| |||||||| Sbjct: 84513 cagggccaaaatttcttctttgtt 84536
>gb|AC146555.5| Medicago truncatula clone mth2-10p14, complete sequence Length = 127640 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 23 atcgtagaaaataaagatac 42 |||||||||||||||||||| Sbjct: 60015 atcgtagaaaataaagatac 59996
>emb|AL592296.16| Human DNA sequence from clone RP11-792P23 on chromosome 10 Contains a novel pseudogene and the 3' end of a novel gene (MGC46732), complete sequence Length = 77088 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tagaaaataaagatacaata 46 |||||||||||||||||||| Sbjct: 72464 tagaaaataaagatacaata 72483
>emb|AL512452.7| Human DNA sequence from clone RP11-520F22 on chromosome 13, complete sequence Length = 141913 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 169 gaaataactaaagcaaaggtggaa 192 |||||||||||| ||||||||||| Sbjct: 123562 gaaataactaaaccaaaggtggaa 123539
>emb|AL365199.11| Human DNA sequence from clone RP11-124O11 on chromosome 10 Contains two novel genes (FLJ36774) and five CpG islands, complete sequence Length = 158335 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 403 tttcatctttgttgatcatg 422 |||||||||||||||||||| Sbjct: 8893 tttcatctttgttgatcatg 8912
>emb|AL139039.17| Human DNA sequence from clone RP11-360O19 on chromosome 6 Contains a novel gene, a glucosaminyl (N-acetyl) transferase 1 core 2 (beta-1,6-N-acetylglucosaminyltransferase) (GCNT1) pseudogene, the gene for a novel protein similar to GCNT1, the 5' end of the GCNT2 gene for glucosaminyl (N-acetyl) transferase 2 I-branching enzyme and a ribosomal protein L21 (RPL21) pseudogene, complete sequence Length = 87636 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 tagaaaataaagatacaata 46 |||||||||||||||||||| Sbjct: 14169 tagaaaataaagatacaata 14150
>emb|AL117337.26|HSA393J16 Human DNA sequence from clone RP11-393J16 on chromosome 10 Contains a zinc finger protein pseudogene, the ZNF25 gene for zinc finger protein 25 (KOX 19), the 5' end of the ZNF33A gene for zinc finger protein 33a (KOX 31) and two CpG islands, complete sequence Length = 161452 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 392 cagggccaaaatttcatctttgtt 415 ||||||||||||||| |||||||| Sbjct: 51220 cagggccaaaatttcttctttgtt 51197
>emb|X15311.1|RESSAVPO Woolly monkey sarcoma virus SSAV provirus pol gene for reverse transcriptase (part.) Length = 1431 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 392 cagggccaaaatttcatctttgtt 415 ||||||||||||||| |||||||| Sbjct: 931 cagggccaaaatttcttctttgtt 908
>gb|AF321984.1|AF321984 Lycopersicon esculentum lethal leaf spot 1-like protein mRNA, complete cds Length = 1717 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 399 aaaatttcatctttgttgat 418 |||||||||||||||||||| Sbjct: 1626 aaaatttcatctttgttgat 1645
>gb|AC092364.3| Homo sapiens chromosome 19 clone RP11-420K14, complete sequence Length = 170470 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 392 cagggccaaaatttcatctttgtt 415 ||||||||||||||| |||||||| Sbjct: 53362 cagggccaaaatttcttctttgtt 53385
>gb|AF269234.1|AF269234 Agrocybe aegerita strain WT-3 POLB-P1 (polB-P1) gene, partial cds; tRNA-Met gene, complete sequence; and POLB-P1 (polB-P1) gene, partial cds; mitochondrial genes for mitochondrial products Length = 4225 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 tagaaaataaagatacaata 46 |||||||||||||||||||| Sbjct: 4144 tagaaaataaagatacaata 4125 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tagaaaataaagatacaata 46 |||||||||||||||||||| Sbjct: 82 tagaaaataaagatacaata 101
>gb|AF269233.1|AF269233 Agrocybe aegerita POLB-P1 (polB-P1) gene, complete cds; and tRNA-Met gene, complete sequence; mitochondrial genes for mitochondrial products Length = 3402 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 tagaaaataaagatacaata 46 |||||||||||||||||||| Sbjct: 83 tagaaaataaagatacaata 102
>gb|AC009533.10| Homo sapiens 12 BAC RP11-22B23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162572 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 392 cagggccaaaatttcatctttgtt 415 ||||||||||||||| |||||||| Sbjct: 56560 cagggccaaaatttcttctttgtt 56537
>gb|AF205588.1|AF205588 Homo sapiens ZNF01 and HUMORFKG1B genes, partial sequence, complete sequence Length = 312283 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 392 cagggccaaaatttcatctttgtt 415 ||||||||||||||| |||||||| Sbjct: 130738 cagggccaaaatttcttctttgtt 130715
>gb|AC131803.3| Mus musculus BAC clone RP24-549I15 from chromosome 5, complete sequence Length = 168439 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 179 aagcaaaggtggaacaggct 198 |||||||||||||||||||| Sbjct: 2233 aagcaaaggtggaacaggct 2252
>emb|BX005021.4| Zebrafish DNA sequence from clone DKEY-69D12, complete sequence Length = 188337 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ataaaagtacacacatcctt 105 |||||||||||||||||||| Sbjct: 184522 ataaaagtacacacatcctt 184503
>emb|Z70664.1|HERVHC2 Human endogenous retroviral element HC2 Length = 6069 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 392 cagggccaaaatttcatctttgtt 415 ||||||||||||||| |||||||| Sbjct: 4257 cagggccaaaatttcttctttgtt 4234
>gb|M26927.1|PCGGPE Gibbon ape leukemia virus gag, pol, and env genes, complete cds Length = 8088 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 392 cagggccaaaatttcatctttgtt 415 ||||||||||||||| |||||||| Sbjct: 4401 cagggccaaaatttcctctttgtt 4378 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,198,977 Number of Sequences: 3902068 Number of extensions: 4198977 Number of successful extensions: 82155 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 82010 Number of HSP's gapped (non-prelim): 140 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)