ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl39a02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK069115.1| Oryza sativa (japonica cultivar-group) cDNA clon... 105 1e-19
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 72 2e-09
4emb|AL713951.4|CNS07YPU Oryza sativa chromosome 12, . BAC OJ1111... 72 2e-09
5ref|XM_478073.1| Oryza sativa (japonica cultivar-group), mRNA 54 4e-04
6dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
7dbj|AP005181.4| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
8dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic D... 54 4e-04
9dbj|AK111684.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
10gb|AC168277.2| Mus musculus BAC RP24-186L17 (Roswell Park Cance... 44 0.38
11emb|AL359074.12| Human DNA sequence from clone RP11-137L10 on ch... 44 0.38
12emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 44 0.38
13gb|AC073389.10| Homo sapiens chromosome 10 clone RP11-464F9, com... 44 0.38
14gb|AC153601.6| Mus musculus 6 BAC RP23-405O6 (Roswell Park Cance... 44 0.38
15emb|AL929447.7| Mouse DNA sequence from clone RP23-360O17 on chr... 44 0.38
16emb|CR751602.12| Zebrafish DNA sequence from clone DKEYP-10A3 in... 42 1.5
17emb|AL121718.8|HSJ390M24 Human DNA sequence from clone RP3-390M2... 42 1.5
18gb|AC116697.7| Mus musculus chromosome 3, clone RP24-444C12, com... 40 5.9
19gb|AC122541.3| Mus musculus BAC clone RP24-567D4 from chromosome... 40 5.9
20gb|AC138679.10| Mus musculus chromosome 5, clone RP23-177I4, com... 40 5.9
21gb|AC146076.2| Pan troglodytes BAC clone RP43-15J5 from 7, compl... 40 5.9
22gb|AC146555.5| Medicago truncatula clone mth2-10p14, complete se... 40 5.9
23emb|AL592296.16| Human DNA sequence from clone RP11-792P23 on ch... 40 5.9
24emb|AL512452.7| Human DNA sequence from clone RP11-520F22 on chr... 40 5.9
25emb|AL365199.11| Human DNA sequence from clone RP11-124O11 on ch... 40 5.9
26emb|AL139039.17| Human DNA sequence from clone RP11-360O19 on ch... 40 5.9
27emb|AL117337.26|HSA393J16 Human DNA sequence from clone RP11-393... 40 5.9
28emb|X15311.1|RESSAVPO Woolly monkey sarcoma virus SSAV provirus ... 40 5.9
29gb|AF321984.1|AF321984 Lycopersicon esculentum lethal leaf spot ... 40 5.9
30gb|AC092364.3| Homo sapiens chromosome 19 clone RP11-420K14, com... 40 5.9
31gb|AF269234.1|AF269234 Agrocybe aegerita strain WT-3 POLB-P1 (po... 40 5.9
32gb|AF269233.1|AF269233 Agrocybe aegerita POLB-P1 (polB-P1) gene,... 40 5.9
33gb|AC009533.10| Homo sapiens 12 BAC RP11-22B23 (Roswell Park Can... 40 5.9
34gb|AF205588.1|AF205588 Homo sapiens ZNF01 and HUMORFKG1B genes, ... 40 5.9
35gb|AC131803.3| Mus musculus BAC clone RP24-549I15 from chromosom... 40 5.9
36emb|BX005021.4| Zebrafish DNA sequence from clone DKEY-69D12, co... 40 5.9
37emb|Z70664.1|HERVHC2 Human endogenous retroviral element HC2 40 5.9
38gb|M26927.1|PCGGPE Gibbon ape leukemia virus gag, pol, and env g... 40 5.9

>dbj|AK069115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008H02, full
            insert sequence
          Length = 2846

 Score =  105 bits (53), Expect = 1e-19
 Identities = 77/85 (90%)
 Strand = Plus / Minus

                                                                        
Query: 354  tagtactcccagatacgcatgaacttatcatcaaagcccagggccaaaatttcatctttg 413
            |||||||||||  |||| |||||||| ||||||||||||||||||||||||| |||||| 
Sbjct: 2569 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaattttatcttta 2510

                                     
Query: 414  ttgatcatgaagttgtccctccagc 438
            |||  ||||||||||||||||||||
Sbjct: 2509 ttggccatgaagttgtccctccagc 2485



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 285  ggacgagagaaaacaacctggtaatctccaagtgt 319
            ||||||||||| |||| |||||| |||||||||||
Sbjct: 2638 ggacgagagaatacaatctggtagtctccaagtgt 2604



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                   
Query: 354     tagtactcccagatacgcatgaacttatcatcaaagcccagggccaaaattt 405
               |||||||||||  |||| |||||||| |||||||||||||||||||||||||
Sbjct: 9539455 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaattt 9539404



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 419     catgaagttgtccctccagc 438
               ||||||||||||||||||||
Sbjct: 9538984 catgaagttgtccctccagc 9538965



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                   
Query: 354     tagtactcccagatacgcatgaacttatcatcaaagcccagggccaaaattt 405
               |||||||||||  |||| |||||||| |||||||||||||||||||||||||
Sbjct: 9539340 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaattt 9539289



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 419     catgaagttgtccctccagc 438
               ||||||||||||||||||||
Sbjct: 9538869 catgaagttgtccctccagc 9538850



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>emb|AL713951.4|CNS07YPU Oryza sativa chromosome 12, . BAC OJ1111_C09 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 165137

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 48/52 (92%)
 Strand = Plus / Minus

                                                                
Query: 354  tagtactcccagatacgcatgaacttatcatcaaagcccagggccaaaattt 405
            |||||||||||  |||| |||||||| |||||||||||||||||||||||||
Sbjct: 2766 tagtactcccatgtacgaatgaacttctcatcaaagcccagggccaaaattt 2715



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 419  catgaagttgtccctccagc 438
            ||||||||||||||||||||
Sbjct: 2295 catgaagttgtccctccagc 2276



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>ref|XM_478073.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2397

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 96/119 (80%)
 Strand = Plus / Minus

                                                                        
Query: 278  gttgcctggacgagagaaaacaacctggtaatctccaagtgttcgtgacttgaagcaaga 337
            |||||| || ||||| || |||| |||||| | ||||||||| ||||||||||| | || 
Sbjct: 2343 gttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgacttgaacccagc 2284

                                                                       
Query: 338  cgcagagaatatgaggtagtactcccagatacgcatgaacttatcatcaaagcccaggg 396
             ||  || ||||||  ||||||||||| || || |||||||| ||||| || |||||||
Sbjct: 2283 tgcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaatcccaggg 2225



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 96/119 (80%)
 Strand = Plus / Minus

                                                                            
Query: 278      gttgcctggacgagagaaaacaacctggtaatctccaagtgttcgtgacttgaagcaaga 337
                |||||| || ||||| || |||| |||||| | ||||||||| ||||||||||| | || 
Sbjct: 17066588 gttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgacttgaacccagc 17066529

                                                                           
Query: 338      cgcagagaatatgaggtagtactcccagatacgcatgaacttatcatcaaagcccaggg 396
                 ||  || ||||||  ||||||||||| || || |||||||| ||||| || |||||||
Sbjct: 17066528 tgcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaatcccaggg 17066470



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>dbj|AP005181.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0016H06
          Length = 148158

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 96/119 (80%)
 Strand = Plus / Minus

                                                                          
Query: 278    gttgcctggacgagagaaaacaacctggtaatctccaagtgttcgtgacttgaagcaaga 337
              |||||| || ||||| || |||| |||||| | ||||||||| ||||||||||| | || 
Sbjct: 145999 gttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgacttgaacccagc 145940

                                                                         
Query: 338    cgcagagaatatgaggtagtactcccagatacgcatgaacttatcatcaaagcccaggg 396
               ||  || ||||||  ||||||||||| || || |||||||| ||||| || |||||||
Sbjct: 145939 tgcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaatcccaggg 145881



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>dbj|AP004315.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0571D04
          Length = 149302

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 96/119 (80%)
 Strand = Plus / Minus

                                                                         
Query: 278   gttgcctggacgagagaaaacaacctggtaatctccaagtgttcgtgacttgaagcaaga 337
             |||||| || ||||| || |||| |||||| | ||||||||| ||||||||||| | || 
Sbjct: 19714 gttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgacttgaacccagc 19655

                                                                        
Query: 338   cgcagagaatatgaggtagtactcccagatacgcatgaacttatcatcaaagcccaggg 396
              ||  || ||||||  ||||||||||| || || |||||||| ||||| || |||||||
Sbjct: 19654 tgcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaatcccaggg 19596



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>dbj|AK111684.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013169K10, full
            insert sequence
          Length = 1367

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 96/119 (80%)
 Strand = Plus / Minus

                                                                        
Query: 278  gttgcctggacgagagaaaacaacctggtaatctccaagtgttcgtgacttgaagcaaga 337
            |||||| || ||||| || |||| |||||| | ||||||||| ||||||||||| | || 
Sbjct: 1120 gttgccaggccgagacaacacaatctggtagtttccaagtgtacgtgacttgaacccagc 1061

                                                                       
Query: 338  cgcagagaatatgaggtagtactcccagatacgcatgaacttatcatcaaagcccaggg 396
             ||  || ||||||  ||||||||||| || || |||||||| ||||| || |||||||
Sbjct: 1060 tgcgcagtatatgaaatagtactcccatatgcggatgaacttgtcatcgaatcccaggg 1002



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>gb|AC168277.2| Mus musculus  BAC RP24-186L17 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 155635

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 315   agtgttcgtgacttgaagcaag 336
             ||||||||||||||||||||||
Sbjct: 23175 agtgttcgtgacttgaagcaag 23154



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>emb|AL359074.12| Human DNA sequence from clone RP11-137L10 on chromosome 10 Contains the
             5' end of the PPP3CB gene for protein phosphatase 3
             (formerly 2B) catalytic subunit beta isoform (calcineurin
             A beta), two novel genes (FLJ37318), the 3' end of a novel
             gene, a ribosomal protein S26 (RPS26) pseudogene and a CpG
             island, complete sequence
          Length = 152161

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 294   aaaacaacctggtaatctccaa 315
             ||||||||||||||||||||||
Sbjct: 43260 aaaacaacctggtaatctccaa 43281



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>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 151     attattggcaaatacgtagaaa 172
               ||||||||||||||||||||||
Sbjct: 1240784 attattggcaaatacgtagaaa 1240805



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>gb|AC073389.10| Homo sapiens chromosome 10 clone RP11-464F9, complete sequence
          Length = 190681

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 294    aaaacaacctggtaatctccaa 315
              ||||||||||||||||||||||
Sbjct: 177522 aaaacaacctggtaatctccaa 177501



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>gb|AC153601.6| Mus musculus 6 BAC RP23-405O6 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 201911

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 315   agtgttcgtgacttgaagcaag 336
             ||||||||||||||||||||||
Sbjct: 91276 agtgttcgtgacttgaagcaag 91255



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>emb|AL929447.7| Mouse DNA sequence from clone RP23-360O17 on chromosome 4, complete
             sequence
          Length = 36704

 Score = 44.1 bits (22), Expect = 0.38
 Identities = 32/34 (94%), Gaps = 1/34 (2%)
 Strand = Plus / Minus

                                               
Query: 402   atttcatctttgttgatcatgaagttgtccctcc 435
             |||||||||||| ||||||||||| |||||||||
Sbjct: 23235 atttcatctttgatgatcatgaag-tgtccctcc 23203



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>emb|CR751602.12| Zebrafish DNA sequence from clone DKEYP-10A3 in linkage group 5,
             complete sequence
          Length = 65729

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 31    aaataaagatacaataccatgcaat 55
             ||||||||||||||||| |||||||
Sbjct: 34685 aaataaagatacaatacaatgcaat 34709



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>emb|AL121718.8|HSJ390M24 Human DNA sequence from clone RP3-390M24 on chromosome 6 Contains part
             of a novel gene, complete sequence
          Length = 73095

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 395   ggccaaaatttcatctttgtt 415
             |||||||||||||||||||||
Sbjct: 17913 ggccaaaatttcatctttgtt 17933



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>gb|AC116697.7| Mus musculus chromosome 3, clone RP24-444C12, complete sequence
          Length = 183146

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 397   ccaaaatttcatctttgttg 416
             ||||||||||||||||||||
Sbjct: 77402 ccaaaatttcatctttgttg 77383



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>gb|AC122541.3| Mus musculus BAC clone RP24-567D4 from chromosome 5, complete sequence
          Length = 166883

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    aagcaaaggtggaacaggct 198
              ||||||||||||||||||||
Sbjct: 148839 aagcaaaggtggaacaggct 148858



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>gb|AC138679.10| Mus musculus chromosome 5, clone RP23-177I4, complete sequence
          Length = 230184

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    aagcaaaggtggaacaggct 198
              ||||||||||||||||||||
Sbjct: 206193 aagcaaaggtggaacaggct 206174



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>gb|AC146076.2| Pan troglodytes BAC clone RP43-15J5 from 7, complete sequence
          Length = 161297

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 392   cagggccaaaatttcatctttgtt 415
             ||||||||||||||| ||||||||
Sbjct: 84513 cagggccaaaatttcttctttgtt 84536



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>gb|AC146555.5| Medicago truncatula clone mth2-10p14, complete sequence
          Length = 127640

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    atcgtagaaaataaagatac 42
             ||||||||||||||||||||
Sbjct: 60015 atcgtagaaaataaagatac 59996



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>emb|AL592296.16| Human DNA sequence from clone RP11-792P23 on chromosome 10 Contains a
             novel pseudogene and the 3' end of a novel gene
             (MGC46732), complete sequence
          Length = 77088

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 27    tagaaaataaagatacaata 46
             ||||||||||||||||||||
Sbjct: 72464 tagaaaataaagatacaata 72483



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>emb|AL512452.7| Human DNA sequence from clone RP11-520F22 on chromosome 13, complete
              sequence
          Length = 141913

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 169    gaaataactaaagcaaaggtggaa 192
              |||||||||||| |||||||||||
Sbjct: 123562 gaaataactaaaccaaaggtggaa 123539



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>emb|AL365199.11| Human DNA sequence from clone RP11-124O11 on chromosome 10 Contains
            two novel genes (FLJ36774) and five CpG islands, complete
            sequence
          Length = 158335

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 403  tttcatctttgttgatcatg 422
            ||||||||||||||||||||
Sbjct: 8893 tttcatctttgttgatcatg 8912



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>emb|AL139039.17| Human DNA sequence from clone RP11-360O19 on chromosome 6 Contains a
             novel gene, a glucosaminyl (N-acetyl) transferase 1 core 2
             (beta-1,6-N-acetylglucosaminyltransferase) (GCNT1)
             pseudogene, the gene for a novel protein similar to GCNT1,
             the 5' end of the GCNT2 gene for glucosaminyl (N-acetyl)
             transferase 2 I-branching enzyme and a ribosomal protein
             L21 (RPL21) pseudogene, complete sequence
          Length = 87636

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    tagaaaataaagatacaata 46
             ||||||||||||||||||||
Sbjct: 14169 tagaaaataaagatacaata 14150



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>emb|AL117337.26|HSA393J16 Human DNA sequence from clone RP11-393J16 on chromosome 10 Contains a
             zinc finger protein pseudogene, the ZNF25 gene for zinc
             finger protein 25 (KOX 19), the 5' end of the ZNF33A gene
             for zinc finger protein 33a (KOX 31) and two CpG islands,
             complete sequence
          Length = 161452

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 392   cagggccaaaatttcatctttgtt 415
             ||||||||||||||| ||||||||
Sbjct: 51220 cagggccaaaatttcttctttgtt 51197



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>emb|X15311.1|RESSAVPO Woolly monkey sarcoma virus SSAV provirus pol gene for reverse
           transcriptase (part.)
          Length = 1431

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 392 cagggccaaaatttcatctttgtt 415
           ||||||||||||||| ||||||||
Sbjct: 931 cagggccaaaatttcttctttgtt 908



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>gb|AF321984.1|AF321984 Lycopersicon esculentum lethal leaf spot 1-like protein mRNA,
            complete cds
          Length = 1717

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 399  aaaatttcatctttgttgat 418
            ||||||||||||||||||||
Sbjct: 1626 aaaatttcatctttgttgat 1645



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>gb|AC092364.3| Homo sapiens chromosome 19 clone RP11-420K14, complete sequence
          Length = 170470

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 392   cagggccaaaatttcatctttgtt 415
             ||||||||||||||| ||||||||
Sbjct: 53362 cagggccaaaatttcttctttgtt 53385



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>gb|AF269234.1|AF269234 Agrocybe aegerita strain WT-3 POLB-P1 (polB-P1) gene, partial cds;
            tRNA-Met gene, complete sequence; and POLB-P1 (polB-P1)
            gene, partial cds; mitochondrial genes for mitochondrial
            products
          Length = 4225

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 27   tagaaaataaagatacaata 46
            ||||||||||||||||||||
Sbjct: 4144 tagaaaataaagatacaata 4125



 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  tagaaaataaagatacaata 46
           ||||||||||||||||||||
Sbjct: 82  tagaaaataaagatacaata 101



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>gb|AF269233.1|AF269233 Agrocybe aegerita POLB-P1 (polB-P1) gene, complete cds; and
           tRNA-Met gene, complete sequence; mitochondrial genes
           for mitochondrial products
          Length = 3402

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 27  tagaaaataaagatacaata 46
           ||||||||||||||||||||
Sbjct: 83  tagaaaataaagatacaata 102



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>gb|AC009533.10| Homo sapiens 12 BAC RP11-22B23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 162572

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 392   cagggccaaaatttcatctttgtt 415
             ||||||||||||||| ||||||||
Sbjct: 56560 cagggccaaaatttcttctttgtt 56537



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>gb|AF205588.1|AF205588 Homo sapiens ZNF01 and HUMORFKG1B genes, partial sequence, complete
              sequence
          Length = 312283

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 392    cagggccaaaatttcatctttgtt 415
              ||||||||||||||| ||||||||
Sbjct: 130738 cagggccaaaatttcttctttgtt 130715



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>gb|AC131803.3| Mus musculus BAC clone RP24-549I15 from chromosome 5, complete
            sequence
          Length = 168439

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 179  aagcaaaggtggaacaggct 198
            ||||||||||||||||||||
Sbjct: 2233 aagcaaaggtggaacaggct 2252



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>emb|BX005021.4| Zebrafish DNA sequence from clone DKEY-69D12, complete sequence
          Length = 188337

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 86     ataaaagtacacacatcctt 105
              ||||||||||||||||||||
Sbjct: 184522 ataaaagtacacacatcctt 184503



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>emb|Z70664.1|HERVHC2 Human endogenous retroviral element HC2
          Length = 6069

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 392  cagggccaaaatttcatctttgtt 415
            ||||||||||||||| ||||||||
Sbjct: 4257 cagggccaaaatttcttctttgtt 4234



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>gb|M26927.1|PCGGPE Gibbon ape leukemia virus gag, pol, and env genes, complete cds
          Length = 8088

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 392  cagggccaaaatttcatctttgtt 415
            ||||||||||||||| ||||||||
Sbjct: 4401 cagggccaaaatttcctctttgtt 4378


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,198,977
Number of Sequences: 3902068
Number of extensions: 4198977
Number of successful extensions: 82155
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82010
Number of HSP's gapped (non-prelim): 140
length of query: 438
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 416
effective length of database: 17,147,199,772
effective search space: 7133235105152
effective search space used: 7133235105152
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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