>YD222_YEAST (Q07651) Hypothetical 34.1 kDa protein in CDC13-GCS1 intergenic|
           region
          Length = 309

 Score = 35.0 bits (79), Expect = 0.042
 Identities = 19/55 (34%), Positives = 30/55 (54%)
 Frame = +3

Query: 168 IFYMSHDAHNKQTDYDKYLQWAGRSFETRRTLDDE*SNVGQYKSSEPITSLAPMV 332
           IF  +H AH+  +D+D Y Q+   S +T   ++    N G    + PIT+ AP+V
Sbjct: 208 IFSATHKAHSTYSDHDMYAQYESPSVDTGAQMEKSTYNSGATDGAGPITA-APVV 261

>DOM3_CAEEL (Q10660) Protein dom-3|
          Length = 393

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 201 QTDYDKYLQWAGRSFETRRTLDDE*SNVGQYKSSEPITS 317
           QTD DK + + G  FE   TLDD+     Q  +S P+T+
Sbjct: 190 QTDLDKRMSYWGHKFEQYVTLDDD---AEQPDTSSPVTT 225

>METE_NEIMA (Q9JUT6) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 758

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +3

Query: 198 KQTDYDKYLQWAGRSFETRRTLDDE*SNVGQYKSSEPITSLAPMV 332
           K+ D+D YL WAG SF    T  ++ + +  +        + P +
Sbjct: 612 KRADWDAYLNWAGESFRLSSTGCEDSTQIHTHMCYSEFNDILPAI 656

>GAK_MOUSE (Q99KY4) Cyclin G-associated kinase (EC 2.7.11.1)|
          Length = 1305

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 20/85 (23%), Positives = 38/85 (44%)
 Frame = +1

Query: 16  SSAGEQHKIMNKTRYNRHNLTQ*EPELSDNTMKARCLSRQMTTQSKHKDSTYFTCHMMHT 195
           S+  EQ  I++K  + +  L +     +    +A     ++T     + S+  T H +HT
Sbjct: 735 SNREEQQDILSK--FGKPELPRQPGSTAQYDAEAGSPEAEITESDSPQSSSTDTNHFLHT 792

Query: 196 INRQTMTSTSNGLDGLSRQEEPSMM 270
           ++ Q       GLD  S +E  S++
Sbjct: 793 LDWQEEKEPETGLDNTSPKESQSVL 817

>METE_HAEIN (P45331) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 756

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 198 KQTDYDKYLQWAGRSF 245
           K+ D+D YLQWAG +F
Sbjct: 611 KRADWDAYLQWAGEAF 626

>METE_PASMU (P57843) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 757

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 198 KQTDYDKYLQWAGRSF 245
           K+ D+D YLQWAG +F
Sbjct: 612 KRADWDAYLQWAGEAF 627

>AGAL_RHIME (Q9X4Y0) Alpha-galactosidase (EC 3.2.1.22) (Melibiase)|
          Length = 490

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = +3

Query: 108 NESKMLITTNDYTIKA*GQYIFYMSHDAHNKQTDYDKYLQWAGRSFETRRTLDDE*SNV 284
           +E    I  +D+     G Y+ Y +   +  +T+Y ++L+ AGR  ET R  ++  S +
Sbjct: 267 DEISRWIDMSDWIHGETGGYLRYSTETRNWFETEYPRFLEEAGRPLETIRRSNEHASRI 325

>NHK1_DROME (Q7KRY6) Nucleosomal histone kinase 1 (EC 2.7.11.1) (Protein|
           baellchen)
          Length = 599

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 159 GQYIFYMSHDAHNKQTDYDKYLQW 230
           G ++ Y+S   HN++ DYDK   W
Sbjct: 304 GDFMKYVSKLTHNQEPDYDKCRSW 327

>METE_NEIMB (Q9JZQ2) 5-methyltetrahydropteroyltriglutamate--homocysteine|
           methyltransferase (EC 2.1.1.14) (Methionine synthase,
           vitamin-B12 independent isozyme) (Cobalamin-independent
           methionine synthase)
          Length = 758

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 198 KQTDYDKYLQWAGRSF 245
           K+ D+D YL WAG SF
Sbjct: 612 KRADWDAYLNWAGESF 627

>VPS39_MOUSE (Q8R5L3) Vam6/Vps39-like protein (Vps39 protein)|
          Length = 886

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 130 RQMTTQSKHKDSTYFTCHMMHT 195
           +Q+TT SK K ++ FTC + HT
Sbjct: 106 QQITTVSKAKGASLFTCDLQHT 127

>VPS39_HUMAN (Q96JC1) Vam6/Vps39-like protein (hVam6p)|
          Length = 886

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +1

Query: 130 RQMTTQSKHKDSTYFTCHMMHT 195
           +Q+TT SK K ++ FTC + HT
Sbjct: 106 QQITTVSKAKGASLFTCDLQHT 127

>RPOA_SHFV (Q68772) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
            Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
            papain-like cysteine proteinase (EC 3.4.22.-)
            (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
            (EC 3.4.22.-) (PCP1
          Length = 3596

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
 Frame = -2

Query: 216  CHSLSVYCVHHV---TCKICTVLML 151
            CH LS +C H +   TCK+C++ +L
Sbjct: 2783 CHVLSSFCKHVIGSNTCKMCSIPIL 2807

>HASS_XENLA (O57428) Hyaluronan synthase-related protein (xHAS-RS)|
          Length = 583

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +1

Query: 58  YNRHNLTQ*EPELSDNTMKARCLSRQMTTQSKHKDSTYFTCHMMHTINRQT 210
           YN+  L    P   D  +  R LS    T+  HK   Y  C  +  +N+QT
Sbjct: 322 YNKTFLGTRCPIGDDRFLTNRVLSMGYRTKYSHKSCAYAPCQYLRWLNQQT 372

>IL4RA_HORSE (Q6WG24) Interleukin-4 receptor alpha chain precursor (IL-4R-alpha)|
           (CD124 antigen)
          Length = 809

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +1

Query: 211 MTSTSNGLDGLSRQEEPSMMSNQM*GSINHQSQ*PLLLQWCSRGQSC 351
           ++  S G  GLS + +PS+      G+    SQ PL +   S G +C
Sbjct: 759 LSLASLGSLGLSEERKPSLFFQPAPGNAQSSSQTPLTVAMLSTGPTC 805

>Y739_METCA (Q60AV5) UPF0042 protein MCA0739|
          Length = 295

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +1

Query: 37  KIMNKTRYNRHNLTQ*EPELSDNTMKARCLSRQMTTQSK-HKDSTYFTCHMMHTINRQTM 213
           K  ++TR  +H LT     L++     R L   + +++  H D+TY T H +  + RQ +
Sbjct: 99  KRFSETR-RKHPLTDASVPLAEAIELERHLLEPVLSRADLHIDTTYTTIHQLRELVRQRV 157

Query: 214 TSTSNGLDGLSRQ 252
              S GL  L  Q
Sbjct: 158 GIPSGGLMSLCLQ 170

>RN5A_HUMAN (Q05823) 2-5A-dependent ribonuclease (EC 3.1.26.-) (2-5A-dependent|
           RNase) (Ribonuclease L) (RNase L) (Ribonuclease 4)
          Length = 741

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 207 DYDKYLQWAGRSFETRRTLDD 269
           D+DK ++WAG   E +R L+D
Sbjct: 503 DFDKSIKWAGDPQEVKRDLED 523

>POLN_ONNVG (P13886) Nonstructural polyprotein (Polyprotein nsP1234) (P1234)|
           [Contains: P123; mRNA capping enzyme nsP1 (EC 2.1.1.-)
           (EC 2.7.7.-) (Nonstructural protein 1);
           Protease/triphosphatase/NTPase/helicase nsP2 (EC
           3.4.22.-) (EC 3.1.3.33) (EC 3.6.1.
          Length = 2514

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -2

Query: 291 TALHLITHHRGFFLSRKTVQPIGGTCHSLSVYCVHHVTCKIC 166
           T+ + +THH G FL  KT   + G   S SV C  +V   IC
Sbjct: 300 TSGYAVTHHAGGFLMCKTTDTVDGERVSFSV-CT-YVPATIC 339

>HEX_ADECR (O39619) Hexon protein (Late protein 2)|
          Length = 905

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
 Frame = +3

Query: 171 FYMSHDAHNKQTDYDKYLQWAG-------RSFETRRTLDDE*SNVGQ 290
           FY+SH        +D  + W G         FE +R +D E  NV Q
Sbjct: 664 FYLSHTFRRVSIMFDSSVSWPGNDRLLTPNEFEIKRYVDGEGYNVAQ 710

>HEX_ADECC (Q65955) Hexon protein (Late protein 2)|
          Length = 905

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 7/47 (14%)
 Frame = +3

Query: 171 FYMSHDAHNKQTDYDKYLQWAG-------RSFETRRTLDDE*SNVGQ 290
           FY+SH        +D  + W G         FE +R +D E  NV Q
Sbjct: 664 FYLSHTFRRVSIMFDSSVSWPGNDRLLTPNEFEIKRYVDGEGYNVAQ 710

>PYRX_PSEPU (Q59712) Dihydroorotase-like protein (Aspartate|
           carbamoyltransferase 44 kDa Non-catalytic chain)
          Length = 424

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 325 QWCSRGQSCKFVGRLL 372
           QW SRG++C F+G  L
Sbjct: 391 QWSSRGENCPFIGHCL 406


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,263,967
Number of Sequences: 219361
Number of extensions: 999574
Number of successful extensions: 2157
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 2134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2156
length of database: 80,573,946
effective HSP length: 111
effective length of database: 56,224,875
effective search space used: 1349397000
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)