ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl38h10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 172 bits (87), Expect = 6e-40 Identities = 225/267 (84%), Gaps = 8/267 (2%) Strand = Plus / Plus Query: 102 taatacaatgaaagcaagatgcttatcacgacaaatgactacacaatc-aaagcataagg 160 ||||||| |||||||||||||||| ||| ||| ||||||| | || | ||||||||| Sbjct: 34633657 taatacagtgaaagcaagatgcttggcactacagatgactaaataagctaaagcataaac 34633716 Query: 161 acagtaca--tattttacatgtc----acatgatgcacacaataaacagacagactatga 214 | |||||| ||| ||||||||| ||||||||||||| ||||| ||| || |||||| Sbjct: 34633717 atagtacaaatatattacatgtcgatcacatgatgcacacgataaatagatag-ctatga 34633775 Query: 215 caagtacctccaatgggctggacggtctttcgagacaagaagaaccctcgatgatgagta 274 || |||||||| || |||||||||||| | ||||||||||||||||| ||||| ||||| Sbjct: 34633776 cagatacctccattgtgctggacggtctcttgagacaagaagaacccttgatgacgagta 34633835 Query: 275 atcaaatgtagggcagtataaatcatcagagccaataacctctcttgctccaatggtgtt 334 ||| |||||||||||||| ||||||||| |||||||| |||||||| |||||| ||| Sbjct: 34633836 atcgaatgtagggcagtacaaatcatcaaagccaatagcctctcttactccaagagtggc 34633895 Query: 335 cccgcggtcaaagctgtaagtttgttg 361 || ||||||||||||||||||||||| Sbjct: 34633896 tccacggtcaaagctgtaagtttgttg 34633922
>dbj|AP004064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1520_C09 Length = 145553 Score = 172 bits (87), Expect = 6e-40 Identities = 225/267 (84%), Gaps = 8/267 (2%) Strand = Plus / Plus Query: 102 taatacaatgaaagcaagatgcttatcacgacaaatgactacacaatc-aaagcataagg 160 ||||||| |||||||||||||||| ||| ||| ||||||| | || | ||||||||| Sbjct: 144597 taatacagtgaaagcaagatgcttggcactacagatgactaaataagctaaagcataaac 144656 Query: 161 acagtaca--tattttacatgtc----acatgatgcacacaataaacagacagactatga 214 | |||||| ||| ||||||||| ||||||||||||| ||||| ||| || |||||| Sbjct: 144657 atagtacaaatatattacatgtcgatcacatgatgcacacgataaatagatag-ctatga 144715 Query: 215 caagtacctccaatgggctggacggtctttcgagacaagaagaaccctcgatgatgagta 274 || |||||||| || |||||||||||| | ||||||||||||||||| ||||| ||||| Sbjct: 144716 cagatacctccattgtgctggacggtctcttgagacaagaagaacccttgatgacgagta 144775 Query: 275 atcaaatgtagggcagtataaatcatcagagccaataacctctcttgctccaatggtgtt 334 ||| |||||||||||||| ||||||||| |||||||| |||||||| |||||| ||| Sbjct: 144776 atcgaatgtagggcagtacaaatcatcaaagccaatagcctctcttactccaagagtggc 144835 Query: 335 cccgcggtcaaagctgtaagtttgttg 361 || ||||||||||||||||||||||| Sbjct: 144836 tccacggtcaaagctgtaagtttgttg 144862
>dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1112_G06 Length = 122580 Score = 172 bits (87), Expect = 6e-40 Identities = 225/267 (84%), Gaps = 8/267 (2%) Strand = Plus / Plus Query: 102 taatacaatgaaagcaagatgcttatcacgacaaatgactacacaatc-aaagcataagg 160 ||||||| |||||||||||||||| ||| ||| ||||||| | || | ||||||||| Sbjct: 100272 taatacagtgaaagcaagatgcttggcactacagatgactaaataagctaaagcataaac 100331 Query: 161 acagtaca--tattttacatgtc----acatgatgcacacaataaacagacagactatga 214 | |||||| ||| ||||||||| ||||||||||||| ||||| ||| || |||||| Sbjct: 100332 atagtacaaatatattacatgtcgatcacatgatgcacacgataaatagatag-ctatga 100390 Query: 215 caagtacctccaatgggctggacggtctttcgagacaagaagaaccctcgatgatgagta 274 || |||||||| || |||||||||||| | ||||||||||||||||| ||||| ||||| Sbjct: 100391 cagatacctccattgtgctggacggtctcttgagacaagaagaacccttgatgacgagta 100450 Query: 275 atcaaatgtagggcagtataaatcatcagagccaataacctctcttgctccaatggtgtt 334 ||| |||||||||||||| ||||||||| |||||||| |||||||| |||||| ||| Sbjct: 100451 atcgaatgtagggcagtacaaatcatcaaagccaatagcctctcttactccaagagtggc 100510 Query: 335 cccgcggtcaaagctgtaagtttgttg 361 || ||||||||||||||||||||||| Sbjct: 100511 tccacggtcaaagctgtaagtttgttg 100537
>ref|XM_468328.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3093 Score = 153 bits (77), Expect = 5e-34 Identities = 134/153 (87%) Strand = Plus / Minus Query: 209 ctatgacaagtacctccaatgggctggacggtctttcgagacaagaagaaccctcgatga 268 |||||||| |||||||| || |||||||||||| | ||||||||||||||||| ||||| Sbjct: 3093 ctatgacagatacctccattgtgctggacggtctcttgagacaagaagaacccttgatga 3034 Query: 269 tgagtaatcaaatgtagggcagtataaatcatcagagccaataacctctcttgctccaat 328 |||||||| |||||||||||||| ||||||||| |||||||| |||||||| |||||| Sbjct: 3033 cgagtaatcgaatgtagggcagtacaaatcatcaaagccaatagcctctcttactccaag 2974 Query: 329 ggtgttcccgcggtcaaagctgtaagtttgttg 361 ||| || ||||||||||||||||||||||| Sbjct: 2973 agtggctccacggtcaaagctgtaagtttgttg 2941
>emb|AL163542.8| Human DNA sequence from clone RP11-360I23 on chromosome 13 Contains part of the DACH gene for dachshund homolog (Drosophila) (DACH1 FLJ10138), complete sequence Length = 177037 Score = 48.1 bits (24), Expect = 0.022 Identities = 24/24 (100%) Strand = Plus / Plus Query: 29 aacaacacaaaataatgaacaaaa 52 |||||||||||||||||||||||| Sbjct: 113687 aacaacacaaaataatgaacaaaa 113710
>gb|AC084414.2|AC084414 Arabidopsis thaliana chromosome 1 BAC F27K7 genomic sequence, complete sequence Length = 54313 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 aaaataatgaacaaaacaaga 57 ||||||||||||||||||||| Sbjct: 4355 aaaataatgaacaaaacaaga 4335
>gb|AC016041.5|AC016041 Genomic sequence for Arabidopsis thaliana BAC F27J15 from chromosome I, complete sequence Length = 119091 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 37 aaaataatgaacaaaacaaga 57 ||||||||||||||||||||| Sbjct: 103958 aaaataatgaacaaaacaaga 103938
>gb|AY181204.1| Oryza sativa (japonica cultivar-group) cultivar Norin 8 genomic sequence Length = 8138 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 102 taatacaatgaaagcaagatgcttatcacgacaaatgacta 142 ||||||| |||||||||||||||| ||| ||| ||||||| Sbjct: 7990 taatacagtgaaagcaagatgcttggcactacagatgacta 8030
>gb|AY181203.1| Oryza sativa (japonica cultivar-group) cultivar Norin 8m genomic sequence Length = 8103 Score = 42.1 bits (21), Expect = 1.4 Identities = 36/41 (87%) Strand = Plus / Plus Query: 102 taatacaatgaaagcaagatgcttatcacgacaaatgacta 142 ||||||| |||||||||||||||| ||| ||| ||||||| Sbjct: 7955 taatacagtgaaagcaagatgcttggcactacagatgacta 7995
>emb|AL672193.10| Mouse DNA sequence from clone RP23-443O18 on chromosome X, complete sequence Length = 210236 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 44 tgaacaaaacaagatacaata 64 ||||||||||||||||||||| Sbjct: 58297 tgaacaaaacaagatacaata 58317
>gb|AC152976.1| Mus musculus BAC RP23-103K17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 194151 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 cacacaataaacagacagac 209 |||||||||||||||||||| Sbjct: 61788 cacacaataaacagacagac 61807
>gb|AC144519.4| Mus musculus BAC clone RP24-325A1 from chromosome 6, complete sequence Length = 195499 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 ataacctctcttgctccaat 328 |||||||||||||||||||| Sbjct: 164276 ataacctctcttgctccaat 164257
>gb|AC102668.12| Mus musculus chromosome 6, clone RP23-296I18, complete sequence Length = 186488 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 cacacaataaacagacagac 209 |||||||||||||||||||| Sbjct: 144039 cacacaataaacagacagac 144058
>gb|AC144508.3| Mus musculus BAC clone RP24-152C23 from chromosome 15, complete sequence Length = 155524 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 acaaaataatgaacaaaaca 54 |||||||||||||||||||| Sbjct: 129232 acaaaataatgaacaaaaca 129251
>gb|AC131714.4| Mus musculus BAC clone RP23-179L6 from chromosome 18, complete sequence Length = 193005 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 106 acaatgaaagcaagatgcttatca 129 ||||||||| |||||||||||||| Sbjct: 38145 acaatgaaatcaagatgcttatca 38122
>gb|AC124580.5| Mus musculus BAC clone RP23-114G7 from chromosome 12, complete sequence Length = 176245 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gaacaaaacaagatacaata 64 |||||||||||||||||||| Sbjct: 138923 gaacaaaacaagatacaata 138904
>gb|AC083805.17| Homo sapiens 12 BAC RP11-620J15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 104816 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 352 aagtttgttggacgccttct 371 |||||||||||||||||||| Sbjct: 12272 aagtttgttggacgccttct 12291
>emb|CR293522.9| Zebrafish DNA sequence from clone DKEY-29I3 in linkage group 7, complete sequence Length = 196250 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 aacaacacaaaataatgaacaaaa 52 ||||||||||||||||||| |||| Sbjct: 147925 aacaacacaaaataatgaaaaaaa 147948
>gb|AC122340.3| Mus musculus BAC clone RP23-354B8 from 15, complete sequence Length = 183991 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 45 gaacaaaacaagatacaatagaca 68 |||||||| ||||||||||||||| Sbjct: 164615 gaacaaaagaagatacaatagaca 164592
>gb|AC004028.2| Homo sapiens PAC clone RP4-800B9 from 7, complete sequence Length = 112392 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 34 cacaaaataatgaacaaaac 53 |||||||||||||||||||| Sbjct: 100671 cacaaaataatgaacaaaac 100690
>gb|AC111144.8| Mus musculus chromosome 6, clone RP23-373C23, complete sequence Length = 198667 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 309 ataacctctcttgctccaat 328 |||||||||||||||||||| Sbjct: 180511 ataacctctcttgctccaat 180530
>gb|AC116465.8| Mus musculus chromosome 10, clone RP23-64J3, complete sequence Length = 237801 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 aacaaaacaagatacaatag 65 |||||||||||||||||||| Sbjct: 34233 aacaaaacaagatacaatag 34214
>gb|AC146751.10| Medicago truncatula clone mth2-60a22, complete sequence Length = 119297 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 atgaacaaaacaagatacaa 62 |||||||||||||||||||| Sbjct: 84759 atgaacaaaacaagatacaa 84778
>emb|CR848003.7| Zebrafish DNA sequence from clone DKEY-180K21 in linkage group 1, complete sequence Length = 53659 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 29 aacaacacaaaataatgaacaaaa 52 ||||||| |||||||||||||||| Sbjct: 22479 aacaacaaaaaataatgaacaaaa 22502
>gb|AC163445.3| Mus musculus chromosome 3, clone RP24-304A4, complete sequence Length = 175181 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gaacaaaacaagatacaata 64 |||||||||||||||||||| Sbjct: 162641 gaacaaaacaagatacaata 162622
>emb|Z97205.1|HS155D22 Human DNA sequence from clone RP1-155D22 on chromosome 6q27 Contains a novel gene, complete sequence Length = 148851 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 45 gaacaaaacaagatacaata 64 |||||||||||||||||||| Sbjct: 136086 gaacaaaacaagatacaata 136105
>emb|AL606517.14| Human DNA sequence from clone RP11-182I10 on chromosome 1 Contains the 5' end of the JAK1 gene for anus kinase 1 (a protein tyrosine kinase), a NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 4 9kDa (NDUFA4) pseudogene, a SIPL protein (SIPL) pseudogene, part of a novel gene, a solute carrier family 2 (facilitated glucose transporter) member 14 (SLC2A14) pseudogene and a CpG island, complete sequence Length = 74530 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 378 aaggcatcaaaagcaaataa 397 |||||||||||||||||||| Sbjct: 34592 aaggcatcaaaagcaaataa 34611
>gb|AC165083.2| Mus musculus BAC clone RP23-411I6 from chromosome 18, complete sequence Length = 208109 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 acaatgaaagcaagatgcttatca 129 ||||||||| |||||||||||||| Sbjct: 95084 acaatgaaatcaagatgcttatca 95107
>emb|BX511151.8| Zebrafish DNA sequence from clone DKEY-242C17 in linkage group 16, complete sequence Length = 157538 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 aacacaaaataatgaacaaa 51 |||||||||||||||||||| Sbjct: 27649 aacacaaaataatgaacaaa 27630
>emb|CR394554.6| Zebrafish DNA sequence from clone CH211-113B13 in linkage group 25, complete sequence Length = 168993 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 43 atgaacaaaacaagatacaatagacata 70 ||||||| |||||||||||| ||||||| Sbjct: 10157 atgaacagaacaagatacaaaagacata 10184
>gb|AC119735.3| Homo sapiens 3 BAC RP11-78E9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 69953 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 183 catgatgcacacaataaacagaca 206 ||||||| |||||||||||||||| Sbjct: 56778 catgatgaacacaataaacagaca 56801
>gb|AC149579.11| Medicago truncatula clone mth2-99d8, complete sequence Length = 111010 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 atattttacatgtcacatga 187 |||||||||||||||||||| Sbjct: 55232 atattttacatgtcacatga 55251
>gb|AC111399.4| Rattus norvegicus Mcs BAC CH230-138L13 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 210984 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aaaataatgaacaaaacaag 56 |||||||||||||||||||| Sbjct: 72743 aaaataatgaacaaaacaag 72724
>emb|BX649536.8| Zebrafish DNA sequence from clone DKEY-21N8 in linkage group 3, complete sequence Length = 203180 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 atgactacacaatcaaagca 155 |||||||||||||||||||| Sbjct: 146040 atgactacacaatcaaagca 146059
>gb|AC096975.5| Rattus norvegicus 2 BAC CH230-203P11 (Children's Hospital Oakland Research Institute) complete sequence Length = 213875 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 37 aaaataatgaacaaaacaag 56 |||||||||||||||||||| Sbjct: 156304 aaaataatgaacaaaacaag 156285
>gb|AC154143.6| Mus musculus chromosome 15, clone RP24-338F24, complete sequence Length = 172765 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 35 acaaaataatgaacaaaaca 54 |||||||||||||||||||| Sbjct: 16152 acaaaataatgaacaaaaca 16171
>emb|BX818579.1|CNS0AEEJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL86ZF05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 973 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 atcagagccaataacctctc 318 |||||||||||||||||||| Sbjct: 664 atcagagccaataacctctc 645
>gb|AC069299.2|AC069299 Arabidopsis thaliana chromosome 1 BAC T1E4 genomic sequence, complete sequence Length = 34138 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 acacaaaataatgaacaaaa 52 |||||||||||||||||||| Sbjct: 4707 acacaaaataatgaacaaaa 4688
>ref|XM_232107.3| PREDICTED: Rattus norvegicus lysyl oxidase-like 3 (predicted) (Loxl3_predicted), mRNA Length = 2366 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 cttcttcactgaaggcatca 386 |||||||||||||||||||| Sbjct: 2223 cttcttcactgaaggcatca 2204
>gb|AC010164.2|AC010164 Arabidopsis thaliana chromosome I BAC F14M2 genomic sequence, complete sequence Length = 103443 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 acacaaaataatgaacaaaa 52 |||||||||||||||||||| Sbjct: 102523 acacaaaataatgaacaaaa 102504
>dbj|AB025630.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPA22 Length = 51436 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 46 aacaaaacaagatacaatag 65 |||||||||||||||||||| Sbjct: 47743 aacaaaacaagatacaatag 47762
>emb|BX510994.6| Zebrafish DNA sequence from clone CH211-51F10 in linkage group 19, complete sequence Length = 186973 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 cacacaataaacagacagac 209 |||||||||||||||||||| Sbjct: 5744 cacacaataaacagacagac 5763
>gb|AC153933.3| Mus musculus 10 BAC RP24-282I24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 179847 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 aacaaaacaagatacaatag 65 |||||||||||||||||||| Sbjct: 136481 aacaaaacaagatacaatag 136462
>gb|AC115693.9| Mus musculus chromosome 3, clone RP24-94P3, complete sequence Length = 175734 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gaacaaaacaagatacaata 64 |||||||||||||||||||| Sbjct: 79462 gaacaaaacaagatacaata 79443
>emb|BX005088.4| Zebrafish DNA sequence from clone CH211-160E15 in linkage group 9, complete sequence Length = 193489 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 caaaataatgaacaaaacaa 55 |||||||||||||||||||| Sbjct: 108418 caaaataatgaacaaaacaa 108437
>gb|AF061156.1|AF061156 Rattus leucopus fibronectin gene, intron following alternative exon EIIIB Length = 1112 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 acaaaataatgaacaaaaca 54 |||||||||||||||||||| Sbjct: 952 acaaaataatgaacaaaaca 933
>gb|AC154269.1| Mus musculus BAC clone RP24-259B17 from 13, complete sequence Length = 170931 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gaacaaaacaagatacaata 64 |||||||||||||||||||| Sbjct: 84534 gaacaaaacaagatacaata 84515
>gb|AC124711.3| Mus musculus BAC clone RP24-100M12 from 12, complete sequence Length = 225134 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 45 gaacaaaacaagatacaata 64 |||||||||||||||||||| Sbjct: 19240 gaacaaaacaagatacaata 19221
>emb|AL773598.5| Zebrafish DNA sequence from clone CH211-207G4, complete sequence Length = 209875 Score = 40.1 bits (20), Expect = 5.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 43 atgaacaaaacaagatacaatagacata 70 ||||||| |||||||||||| ||||||| Sbjct: 112993 atgaacagaacaagatacaaaagacata 112966
>gb|AC113507.12| Mus musculus chromosome 3, clone RP23-376O10, complete sequence Length = 210262 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 375 ctgaaggcatcaaaagcaaa 394 |||||||||||||||||||| Sbjct: 100745 ctgaaggcatcaaaagcaaa 100726
>gb|L20801.1|RATFIBNEC Rat fibronectin gene, exons III-7b through III-10a including alternative exon EIIIB Length = 7747 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 35 acaaaataatgaacaaaaca 54 |||||||||||||||||||| Sbjct: 2672 acaaaataatgaacaaaaca 2653 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,224,652 Number of Sequences: 3902068 Number of extensions: 4224652 Number of successful extensions: 96125 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95988 Number of HSP's gapped (non-prelim): 130 length of query: 409 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 387 effective length of database: 17,147,199,772 effective search space: 6635966311764 effective search space used: 6635966311764 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
