ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38h09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL732355.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 80 7e-12
2emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 72 2e-09
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 72 2e-09
4dbj|AK099725.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 2e-09
5gb|AC100861.2| Homo sapiens chromosome 8, clone RP11-1149O23, co... 42 1.5
6gb|AF022977.1| Caenorhabditis elegans cosmid ZK994, complete seq... 40 5.7
7gb|AC141479.3| Mus musculus BAC clone RP23-281N15 from chromosom... 40 5.7
8emb|BX649247.9| Zebrafish DNA sequence from clone DKEY-181C10 in... 40 5.7
9gb|AC116471.8| Mus musculus chromosome 12, clone RP23-384N3, com... 40 5.7
10gb|AC006337.5| Homo sapiens BAC clone RP11-535N23 from 7, comple... 40 5.7
11emb|AL033544.15|HSE107C5 Human DNA sequence from clone LL22NC01-... 40 5.7
12emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genom... 40 5.7
13gb|AC087256.9| Homo sapiens 12q BAC RP11-443N24 (Roswell Park Ca... 40 5.7
14gb|AC022253.6| Homo sapiens chromosome 11, clone RP11-35P21, com... 40 5.7
15gb|AC021868.17|AC021868 Homo sapiens 12 BAC RP11-679N16 (Roswell... 40 5.7
16gb|AC019209.3|AC019209 Homo sapiens BAC clone RP11-443N24 from S... 40 5.7
17emb|AJ871176.1| Bos taurus ABCG2 gene, PKD2 gene and SPP1 gene, ... 40 5.7
18emb|AL845444.9| Zebrafish DNA sequence from clone DKEY-12F4 in l... 40 5.7

>emb|AL732355.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0322F07, complete
             sequence
          Length = 100419

 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                         
Query: 299   ctacttgcccttctctcgtggagttgatagggcgacgagggtgtcagccgcctgagcgac 358
             |||| |||||||||||||  |||||||||||||||||||||| ||||| ||| |||||||
Sbjct: 33002 ctacctgcccttctctcgaagagttgatagggcgacgagggtatcagctgcccgagcgac 33061

                     
Query: 359   gttgctgc 366
              |||||||
Sbjct: 33062 attgctgc 33069



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>emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004A17,
             complete sequence
          Length = 159894

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                         
Query: 299   ctacttgcccttctctcgtggagttgatagggcgacgagggtgtcagccgcctgagcgac 358
             |||| |||||||||||||  |||||||||||||||||| ||| ||||| ||| |||||||
Sbjct: 72867 ctacctgcccttctctcgaagagttgatagggcgacgatggtatcagctgcccgagcgac 72926

                     
Query: 359   gttgctgc 366
              |||||||
Sbjct: 72927 attgctgc 72934



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Plus

                                                                            
Query: 299      ctacttgcccttctctcgtggagttgatagggcgacgagggtgtcagccgcctgagcgac 358
                |||| |||||||||||||  |||||||||||||||||| ||| ||||| ||| |||||||
Sbjct: 34348464 ctacctgcccttctctcgaagagttgatagggcgacgatggtatcagctgcccgagcgac 34348523

                        
Query: 359      gttgctgc 366
                 |||||||
Sbjct: 34348524 attgctgc 34348531



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>dbj|AK099725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089B18, full
            insert sequence
          Length = 3560

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 60/68 (88%)
 Strand = Plus / Minus

                                                                        
Query: 299  ctacttgcccttctctcgtggagttgatagggcgacgagggtgtcagccgcctgagcgac 358
            |||| |||||||||||||  |||||||||||||||||| ||| ||||| ||| |||||||
Sbjct: 3302 ctacctgcccttctctcgaagagttgatagggcgacgatggtatcagctgcccgagcgac 3243

                    
Query: 359  gttgctgc 366
             |||||||
Sbjct: 3242 attgctgc 3235



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>gb|AC100861.2| Homo sapiens chromosome 8, clone RP11-1149O23, complete sequence
          Length = 164692

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 121  tcccactggtttgtttgttta 141
            |||||||||||||||||||||
Sbjct: 1370 tcccactggtttgtttgttta 1390



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>gb|AF022977.1| Caenorhabditis elegans cosmid ZK994, complete sequence
          Length = 25547

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 135   ttgtttacacctgacctaac 154
             ||||||||||||||||||||
Sbjct: 14370 ttgtttacacctgacctaac 14351



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>gb|AC141479.3| Mus musculus BAC clone RP23-281N15 from chromosome 12, complete
             sequence
          Length = 190974

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 193   ccaccatccagcacatgaaa 212
             ||||||||||||||||||||
Sbjct: 24957 ccaccatccagcacatgaaa 24976



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>emb|BX649247.9| Zebrafish DNA sequence from clone DKEY-181C10 in linkage group 15,
             complete sequence
          Length = 194916

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   gatccaaaacagggaccaaa 262
             ||||||||||||||||||||
Sbjct: 39467 gatccaaaacagggaccaaa 39448



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>gb|AC116471.8| Mus musculus chromosome 12, clone RP23-384N3, complete sequence
          Length = 240876

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   ccaccatccagcacatgaaa 212
             ||||||||||||||||||||
Sbjct: 84070 ccaccatccagcacatgaaa 84051



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>gb|AC006337.5| Homo sapiens BAC clone RP11-535N23 from 7, complete sequence
          Length = 172291

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 252    cagggaccaaaggggtcatc 271
              ||||||||||||||||||||
Sbjct: 169595 cagggaccaaaggggtcatc 169576



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>emb|AL033544.15|HSE107C5 Human DNA sequence from clone LL22NC01-107C5 on chromosome 22q13.33
             Contains GSSs and a CpG Island, complete sequence
          Length = 20427

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 366   ccaggctcagggccgggcgc 385
             ||||||||||||||||||||
Sbjct: 14872 ccaggctcagggccgggcgc 14853



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>emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genome; segment 4/16
          Length = 348942

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 168    cccgcctgtacaacggcaag 187
              ||||||||||||||||||||
Sbjct: 182453 cccgcctgtacaacggcaag 182472



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>gb|AC087256.9| Homo sapiens 12q BAC RP11-443N24 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 149546

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 127   tggtttgtttgtttacacct 146
             ||||||||||||||||||||
Sbjct: 55460 tggtttgtttgtttacacct 55479



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>gb|AC022253.6| Homo sapiens chromosome 11, clone RP11-35P21, complete sequence
          Length = 161629

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   ctgctacttgcccttctctc 315
             ||||||||||||||||||||
Sbjct: 65973 ctgctacttgcccttctctc 65992



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>gb|AC021868.17|AC021868 Homo sapiens 12 BAC RP11-679N16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 168227

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   tggtttgtttgtttacacct 146
             ||||||||||||||||||||
Sbjct: 79578 tggtttgtttgtttacacct 79559



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>gb|AC019209.3|AC019209 Homo sapiens BAC clone RP11-443N24 from Sequence-12, complete sequence
          Length = 196817

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 127    tggtttgtttgtttacacct 146
              ||||||||||||||||||||
Sbjct: 102731 tggtttgtttgtttacacct 102750



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>emb|AJ871176.1| Bos taurus ABCG2 gene, PKD2 gene and SPP1 gene, clone RPCI42_5K14
          Length = 171712

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 106   gaaactaacagcagatcccactggtttgtttg 137
             ||||||||||| ||||| |||||| |||||||
Sbjct: 98851 gaaactaacagaagatctcactggcttgtttg 98820



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>emb|AL845444.9| Zebrafish DNA sequence from clone DKEY-12F4 in linkage group 17,
             complete sequence
          Length = 200306

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   aaacatttacatgtacagca 237
             ||||||||||||||||||||
Sbjct: 41980 aaacatttacatgtacagca 41999


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,587,722
Number of Sequences: 3902068
Number of extensions: 4587722
Number of successful extensions: 81465
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81413
Number of HSP's gapped (non-prelim): 52
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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