Clone Name | rbastl38h09 |
---|---|
Clone Library Name | barley_pub |
>emb|AL732355.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0322F07, complete sequence Length = 100419 Score = 79.8 bits (40), Expect = 7e-12 Identities = 61/68 (89%) Strand = Plus / Plus Query: 299 ctacttgcccttctctcgtggagttgatagggcgacgagggtgtcagccgcctgagcgac 358 |||| ||||||||||||| |||||||||||||||||||||| ||||| ||| ||||||| Sbjct: 33002 ctacctgcccttctctcgaagagttgatagggcgacgagggtatcagctgcccgagcgac 33061 Query: 359 gttgctgc 366 ||||||| Sbjct: 33062 attgctgc 33069
>emb|AL606652.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0004A17, complete sequence Length = 159894 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 299 ctacttgcccttctctcgtggagttgatagggcgacgagggtgtcagccgcctgagcgac 358 |||| ||||||||||||| |||||||||||||||||| ||| ||||| ||| ||||||| Sbjct: 72867 ctacctgcccttctctcgaagagttgatagggcgacgatggtatcagctgcccgagcgac 72926 Query: 359 gttgctgc 366 ||||||| Sbjct: 72927 attgctgc 72934
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Plus Query: 299 ctacttgcccttctctcgtggagttgatagggcgacgagggtgtcagccgcctgagcgac 358 |||| ||||||||||||| |||||||||||||||||| ||| ||||| ||| ||||||| Sbjct: 34348464 ctacctgcccttctctcgaagagttgatagggcgacgatggtatcagctgcccgagcgac 34348523 Query: 359 gttgctgc 366 ||||||| Sbjct: 34348524 attgctgc 34348531
>dbj|AK099725.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089B18, full insert sequence Length = 3560 Score = 71.9 bits (36), Expect = 2e-09 Identities = 60/68 (88%) Strand = Plus / Minus Query: 299 ctacttgcccttctctcgtggagttgatagggcgacgagggtgtcagccgcctgagcgac 358 |||| ||||||||||||| |||||||||||||||||| ||| ||||| ||| ||||||| Sbjct: 3302 ctacctgcccttctctcgaagagttgatagggcgacgatggtatcagctgcccgagcgac 3243 Query: 359 gttgctgc 366 ||||||| Sbjct: 3242 attgctgc 3235
>gb|AC100861.2| Homo sapiens chromosome 8, clone RP11-1149O23, complete sequence Length = 164692 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 121 tcccactggtttgtttgttta 141 ||||||||||||||||||||| Sbjct: 1370 tcccactggtttgtttgttta 1390
>gb|AF022977.1| Caenorhabditis elegans cosmid ZK994, complete sequence Length = 25547 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 135 ttgtttacacctgacctaac 154 |||||||||||||||||||| Sbjct: 14370 ttgtttacacctgacctaac 14351
>gb|AC141479.3| Mus musculus BAC clone RP23-281N15 from chromosome 12, complete sequence Length = 190974 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 193 ccaccatccagcacatgaaa 212 |||||||||||||||||||| Sbjct: 24957 ccaccatccagcacatgaaa 24976
>emb|BX649247.9| Zebrafish DNA sequence from clone DKEY-181C10 in linkage group 15, complete sequence Length = 194916 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 gatccaaaacagggaccaaa 262 |||||||||||||||||||| Sbjct: 39467 gatccaaaacagggaccaaa 39448
>gb|AC116471.8| Mus musculus chromosome 12, clone RP23-384N3, complete sequence Length = 240876 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 193 ccaccatccagcacatgaaa 212 |||||||||||||||||||| Sbjct: 84070 ccaccatccagcacatgaaa 84051
>gb|AC006337.5| Homo sapiens BAC clone RP11-535N23 from 7, complete sequence Length = 172291 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 252 cagggaccaaaggggtcatc 271 |||||||||||||||||||| Sbjct: 169595 cagggaccaaaggggtcatc 169576
>emb|AL033544.15|HSE107C5 Human DNA sequence from clone LL22NC01-107C5 on chromosome 22q13.33 Contains GSSs and a CpG Island, complete sequence Length = 20427 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 ccaggctcagggccgggcgc 385 |||||||||||||||||||| Sbjct: 14872 ccaggctcagggccgggcgc 14853
>emb|BX572596.1| Rhodopseudomonas palustris CGA009 complete genome; segment 4/16 Length = 348942 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 cccgcctgtacaacggcaag 187 |||||||||||||||||||| Sbjct: 182453 cccgcctgtacaacggcaag 182472
>gb|AC087256.9| Homo sapiens 12q BAC RP11-443N24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 149546 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 tggtttgtttgtttacacct 146 |||||||||||||||||||| Sbjct: 55460 tggtttgtttgtttacacct 55479
>gb|AC022253.6| Homo sapiens chromosome 11, clone RP11-35P21, complete sequence Length = 161629 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 ctgctacttgcccttctctc 315 |||||||||||||||||||| Sbjct: 65973 ctgctacttgcccttctctc 65992
>gb|AC021868.17|AC021868 Homo sapiens 12 BAC RP11-679N16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168227 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 tggtttgtttgtttacacct 146 |||||||||||||||||||| Sbjct: 79578 tggtttgtttgtttacacct 79559
>gb|AC019209.3|AC019209 Homo sapiens BAC clone RP11-443N24 from Sequence-12, complete sequence Length = 196817 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 tggtttgtttgtttacacct 146 |||||||||||||||||||| Sbjct: 102731 tggtttgtttgtttacacct 102750
>emb|AJ871176.1| Bos taurus ABCG2 gene, PKD2 gene and SPP1 gene, clone RPCI42_5K14 Length = 171712 Score = 40.1 bits (20), Expect = 5.7 Identities = 29/32 (90%) Strand = Plus / Minus Query: 106 gaaactaacagcagatcccactggtttgtttg 137 ||||||||||| ||||| |||||| ||||||| Sbjct: 98851 gaaactaacagaagatctcactggcttgtttg 98820
>emb|AL845444.9| Zebrafish DNA sequence from clone DKEY-12F4 in linkage group 17, complete sequence Length = 200306 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 218 aaacatttacatgtacagca 237 |||||||||||||||||||| Sbjct: 41980 aaacatttacatgtacagca 41999 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,587,722 Number of Sequences: 3902068 Number of extensions: 4587722 Number of successful extensions: 81465 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81413 Number of HSP's gapped (non-prelim): 52 length of query: 427 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 405 effective length of database: 17,147,199,772 effective search space: 6944615907660 effective search space used: 6944615907660 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)