>gb|AC091755.3| Sus scrofa clone RP44-123F10, complete sequence
          Length = 207865

 Score = 46.1 bits (23), Expect = 0.087
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 287    aaggtgagggcttccaacttcag 309
              |||||||||||||||||||||||
Sbjct: 177138 aaggtgagggcttccaacttcag 177116

>emb|AL137004.7| Human DNA sequence from clone RP1-216A11 on chromosome 6, complete
             sequence
          Length = 52994

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 81    agaaaatagcaaaaacaggga 101
             |||||||||||||||||||||
Sbjct: 28514 agaaaatagcaaaaacaggga 28494

>ref|XM_221540.2| PREDICTED: Rattus norvegicus similar to RIKEN cDNA 2810403B08
            (predicted) (LOC304007), mRNA
          Length = 2538

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 145  agaattgatttggagaacagg 165
            |||||||||||||||||||||
Sbjct: 1041 agaattgatttggagaacagg 1021

>gb|AE000512.1| Thermotoga maritima MSB8, complete genome
          Length = 1860725

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 77      tcacagaaaatagcaaaaaca 97
               |||||||||||||||||||||
Sbjct: 1080264 tcacagaaaatagcaaaaaca 1080284

>gb|DQ240224.1| Avicennia germinans clone Agerm_GA_002 microsatellite sequence
          Length = 692

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 147 aattgatttggagaacaggg 166
           ||||||||||||||||||||
Sbjct: 430 aattgatttggagaacaggg 411

>gb|AC169038.4| Mus musculus BAC clone RP23-31H24 from chromosome 14, complete sequence
          Length = 214689

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 317    atctgcacacatctgtgcat 336
              ||||||||||||||||||||
Sbjct: 198023 atctgcacacatctgtgcat 198004

>ref|NM_004745.3| Homo sapiens discs, large (Drosophila) homolog-associated protein 2
            (DLGAP2), mRNA
          Length = 10101

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 136  gaagtttctagaattgatttggag 159
            ||||||| ||||||||||||||||
Sbjct: 6322 gaagtttttagaattgatttggag 6299

>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
               sequence
          Length = 2300533

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 24      cattggtattgctccttcca 43
               ||||||||||||||||||||
Sbjct: 1393107 cattggtattgctccttcca 1393126



 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 281    gccgtcaaggtgagggcttc 300
              ||||||||||||||||||||
Sbjct: 562568 gccgtcaaggtgagggcttc 562587

>ref|NM_013860.1| Mus musculus LIM domains containing 1 (Limd1), mRNA
          Length = 4806

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  ggtgagggcttccaacttca 308
            ||||||||||||||||||||
Sbjct: 1861 ggtgagggcttccaacttca 1842

>gb|AC125254.9| Mus musculus chromosome 9, clone RP24-156I15, complete sequence
          Length = 161503

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 289    ggtgagggcttccaacttca 308
              ||||||||||||||||||||
Sbjct: 126185 ggtgagggcttccaacttca 126166

>gb|AC120153.11| Mus musculus chromosome 14, clone RP24-251C20, complete sequence
          Length = 182524

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 317   atctgcacacatctgtgcat 336
             ||||||||||||||||||||
Sbjct: 59942 atctgcacacatctgtgcat 59961

>ref|XM_567148.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
           (CNA02120) partial mRNA
          Length = 1590

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 281 gccgtcaaggtgagggcttc 300
           ||||||||||||||||||||
Sbjct: 934 gccgtcaaggtgagggcttc 915

>gb|AC126333.7| Homo sapiens chromosome 8, clone RP11-666I19, complete sequence
          Length = 127374

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 136  gaagtttctagaattgatttggag 159
            ||||||| ||||||||||||||||
Sbjct: 4730 gaagtttttagaattgatttggag 4753

>emb|AL606535.11| Human DNA sequence from clone RP11-438I12 on chromosome 1 Contains a
             keratin 8 (KRT8) pseudogene, complete sequence
          Length = 119814

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    cacagaaaatagcaaaaaca 97
             ||||||||||||||||||||
Sbjct: 56144 cacagaaaatagcaaaaaca 56125

>emb|AL512508.8| Human DNA sequence from clone RP11-364E8 on chromosome 10, complete
             sequence
          Length = 74524

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    aatcacagaaaatagcaaaaacag 98
             |||||||||||| |||||||||||
Sbjct: 38796 aatcacagaaaagagcaaaaacag 38773

>gb|AF188030.5| Homo sapiens chromosome 8 clone RP4-593A12 map p23, complete sequence
          Length = 151329

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 136    gaagtttctagaattgatttggag 159
              ||||||| ||||||||||||||||
Sbjct: 111301 gaagtttttagaattgatttggag 111278

>emb|AL117340.3|HSBA192P3 Human DNA sequence from clone RP11-192P3 on chromosome 10 Contains a
              novel gene, the 5' end of the TCF8 gene for transcription
              factor 8 (represses interleukin 2 expression)
              (BZP,ZEB,ZEB1,AREB6,ZFHEP,NIL-2A,ZFHX1A,NIL-2-A), a
              pseudogene similar to part of serine palmitoyltransferase,
              long chain base subunit 1 (SPTLC1) (HSAN, HSN1, LBC1, LCB1,
              SPT1, SPTI) and two CpG islands, complete sequence
          Length = 187517

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    agaattgatttggagaacag 164
              ||||||||||||||||||||
Sbjct: 135172 agaattgatttggagaacag 135153

>gb|AC159208.2| Mus musculus BAC clone RP23-152K15 from chromosome 13, complete sequence
          Length = 195714

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 74     aaatcacagaaaatagcaaa 93
              ||||||||||||||||||||
Sbjct: 109058 aaatcacagaaaatagcaaa 109039

>gb|AC093200.4| Homo sapiens chromosome 8 clone CTD-2336o2 map p23, complete sequence
          Length = 114816

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 136  gaagtttctagaattgatttggag 159
            ||||||| ||||||||||||||||
Sbjct: 2718 gaagtttttagaattgatttggag 2695

>emb|AJ132409.1|MMU132409 Mus musculus mRNA for LIM domains containing protein 1
          Length = 4806

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  ggtgagggcttccaacttca 308
            ||||||||||||||||||||
Sbjct: 1861 ggtgagggcttccaacttca 1842

>gb|AC102677.9| Mus musculus chromosome 5, clone RP24-67M11, complete sequence
          Length = 167898

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 137   aagtttctagaattgatttg 156
             ||||||||||||||||||||
Sbjct: 34580 aagtttctagaattgatttg 34599

>gb|AF119818.1| Homo sapiens discs, large (Drosophila) homolog-associated protein 2
            (DLGAP2) mRNA, alternatively spliced, partial cds
          Length = 10141

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 136  gaagtttctagaattgatttggag 159
            ||||||| ||||||||||||||||
Sbjct: 6362 gaagtttttagaattgatttggag 6339

>gb|AF119817.1| Homo sapiens discs, large (Drosophila) homolog-associated protein 2
            (DLGAP2) mRNA, alternatively spliced, complete cds
          Length = 10126

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 136  gaagtttctagaattgatttggag 159
            ||||||| ||||||||||||||||
Sbjct: 6347 gaagtttttagaattgatttggag 6324

>dbj|AK047198.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:B930034P16 product:LIM domains
            containing 1, full insert sequence
          Length = 3991

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  ggtgagggcttccaacttca 308
            ||||||||||||||||||||
Sbjct: 1866 ggtgagggcttccaacttca 1847

>dbj|AK083970.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
            enriched library, clone:D130070L13 product:LIM DOMAINS
            CONTAINING PROTEIN 1 homolog [Mus musculus], full insert
            sequence
          Length = 2991

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  ggtgagggcttccaacttca 308
            ||||||||||||||||||||
Sbjct: 1834 ggtgagggcttccaacttca 1815

>gb|AF214636.4| Homo sapiens chromosome 8 clone RP4-605G11 map p23, complete sequence
          Length = 95741

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 136   gaagtttctagaattgatttggag 159
             ||||||| ||||||||||||||||
Sbjct: 29585 gaagtttttagaattgatttggag 29562

>gb|AC100810.18| Homo sapiens chromosome 8, clone CTD-2336O2, complete sequence
          Length = 114639

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 136    gaagtttctagaattgatttggag 159
              ||||||| ||||||||||||||||
Sbjct: 111921 gaagtttttagaattgatttggag 111944

>gb|AC115625.3| Homo sapiens BAC clone RP11-588E23 from 2, complete sequence
          Length = 163505

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 336   ttcattctgctacaatggca 355
             ||||||||||||||||||||
Sbjct: 19896 ttcattctgctacaatggca 19877

>ref|XM_236734.3| PREDICTED: Rattus norvegicus LIM domains containing 1 (predicted)
            (Limd1_predicted), mRNA
          Length = 2403

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  ggtgagggcttccaacttca 308
            ||||||||||||||||||||
Sbjct: 1320 ggtgagggcttccaacttca 1301

>gb|AC127287.4| Mus musculus BAC clone RP23-345G7 from chromosome 7, complete sequence
          Length = 209901

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 291   tgagggcttccaacttcagc 310
             ||||||||||||||||||||
Sbjct: 43818 tgagggcttccaacttcagc 43837

>emb|AL672034.5| Mouse DNA sequence from clone RP23-461P10 on chromosome X, complete
              sequence
          Length = 199101

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    aaaaggaatgaagatctatg 229
              ||||||||||||||||||||
Sbjct: 134434 aaaaggaatgaagatctatg 134415

>gb|AF225898.1|AF225898 Homo sapiens BAC clone 13d21, complete sequence
          Length = 198084

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   agaattgatttggagaacag 164
             ||||||||||||||||||||
Sbjct: 17585 agaattgatttggagaacag 17566

>gb|BC056449.1| Mus musculus LIM domains containing 1, mRNA (cDNA clone MGC:66994
            IMAGE:5703026), complete cds
          Length = 3924

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 289  ggtgagggcttccaacttca 308
            ||||||||||||||||||||
Sbjct: 1747 ggtgagggcttccaacttca 1728

>dbj|AP006635.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT02F07, TM0101,
             complete sequence
          Length = 114487

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 137   aagtttctagaattgatttggaga 160
             ||||||| ||||||||||||||||
Sbjct: 80210 aagtttccagaattgatttggaga 80233


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,925,132
Number of Sequences: 3902068
Number of extensions: 3925132
Number of successful extensions: 80897
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80835
Number of HSP's gapped (non-prelim): 62
length of query: 402
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 380
effective length of database: 17,147,199,772
effective search space: 6515935913360
effective search space used: 6515935913360
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)