ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl38h02 |
|---|---|
| Clone Library Name | barley_pub |
>SMAD_LOXAR (Q7Z1Y7) Sphingomyelinase D precursor (EC 3.1.4.41) (SMase D)| (Dermonecrotic enzyme) Length = 320 Score = 30.0 bits (66), Expect = 2.3 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = -1 Query: 115 EHLGLIAPLYASAATVGSCWSADGIDCCILFGL 17 +++ +A Y A G W +DGI C+L GL Sbjct: 210 DNIDQVANAYKKAGVTGHVWQSDGITNCLLRGL 242
>DNJ5B_MOUSE (Q9CQ94) DnaJ homolog subfamily C member 5B (Beta cysteine string| protein) (Beta-CSP) Length = 199 Score = 29.3 bits (64), Expect = 3.8 Identities = 9/25 (36%), Positives = 16/25 (64%) Frame = -3 Query: 143 RSIGIVVKLRTSWSYCTALCICCHC 69 +++ I++ L T +C LC CC+C Sbjct: 111 KTLFIIIGLLTGCYFCCCLCCCCNC 135
>DNJ5B_HUMAN (Q9UF47) DnaJ homolog subfamily C member 5B (Beta cysteine string| protein) (Beta-CSP) Length = 199 Score = 29.3 bits (64), Expect = 3.8 Identities = 9/25 (36%), Positives = 16/25 (64%) Frame = -3 Query: 143 RSIGIVVKLRTSWSYCTALCICCHC 69 +++ ++V L T +C LC CC+C Sbjct: 111 KALFVIVGLLTGCYFCCCLCCCCNC 135
>MEPE_HUMAN (Q9NQ76) Matrix extracellular phosphoglycoprotein precursor| (Osteoblast/osteocyte factor 45) (OF45) Length = 525 Score = 28.9 bits (63), Expect = 5.0 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -3 Query: 311 VSFSWPPSPWRCKRKPGSGDKAVS 240 V F +PP+P + KRK GS D A S Sbjct: 370 VEFHYPPAPSKEKRKEGSSDAAES 393
>MDC1_RAT (Q5U2M8) Mediator of DNA damage checkpoint protein 1| Length = 1279 Score = 28.9 bits (63), Expect = 5.0 Identities = 18/64 (28%), Positives = 28/64 (43%) Frame = +1 Query: 202 KDEKKCLCQASPAETALSPEPGFLLQRQGEGGQEKETANDHLLRPNWQVCASLPL*TGIV 381 +D + + P ETA+ P PG + EG + +PN + A L TG+V Sbjct: 1036 EDPGEIQVKEEPQETAI-PTPGKRKRDPAEGETQGNPTRSRRTKPNQEAAAPKVLFTGVV 1094 Query: 382 TTEG 393 + G Sbjct: 1095 DSRG 1098
>CF136_HUMAN (Q5SQH8) Protein C6orf136| Length = 315 Score = 28.9 bits (63), Expect = 5.0 Identities = 11/23 (47%), Positives = 11/23 (47%) Frame = +3 Query: 231 FSGRNCFISGAWFPFATPGRGRP 299 F G C GAW PF PG P Sbjct: 111 FEGPPCPYPGAWIPFQVPGTAHP 133
>HIPK3_MOUSE (Q9ERH7) Homeodomain-interacting protein kinase 3 (EC 2.7.11.1)| (Fas-interacting serine/threonine-protein kinase) (FIST) (Nuclear body-associated kinase 3) (Nbak3) (Androgen receptor-interacting nuclear protein kinase) (ANPK) Length = 1192 Score = 28.5 bits (62), Expect = 6.6 Identities = 23/89 (25%), Positives = 33/89 (37%) Frame = +1 Query: 127 TIPILLPCLNSIKLKHSTKLYTRISKDEKKCLCQASPAETALSPEPGFLLQRQGEGGQEK 306 T+ I P + I H I D L +PA L PG L Q+ G ++ Sbjct: 622 TLIICPPAIQGIPAAHGKPTSYSIRVDNTVPLVTQAPAVQPLQIRPGVLSQQTWSGRTQQ 681 Query: 307 ETANDHLLRPNWQVCASLPL*TGIVTTEG 393 +L P WQ + +T+EG Sbjct: 682 ------MLIPAWQQVTPMAPAAATLTSEG 704
>PZRN3_MOUSE (Q69ZS0) PDZ domain-containing RING finger protein 3 (Semaphorin| cytoplasmic domain-associated protein 3) (SEMACAP3 protein) Length = 1063 Score = 28.1 bits (61), Expect = 8.6 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Frame = +1 Query: 163 KLKHSTKLYTRISKDEKKCL-----CQASPAETALSPEPGFLLQRQGEGGQEKETANDHL 327 +L T+L + KD C+++P +SP+ L+R EG E TAN Sbjct: 740 ELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNS--LRRVAEGSSEGATANIEA 797 Query: 328 LRPN 339 RP+ Sbjct: 798 YRPS 801
>DHBC_BACSU (P45744) Isochorismate synthase dhbC (EC 5.4.4.2) (Isochorismate| mutase) Length = 398 Score = 28.1 bits (61), Expect = 8.6 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +3 Query: 45 PSADQHEPTVAADA*SGAIRPRC 113 P+ D HE V ADA + A+RP C Sbjct: 239 PAKDLHEHAVVADAVAAALRPFC 261
>MURB_PSEHT (Q3IJU8) UDP-N-acetylenolpyruvoylglucosamine reductase (EC| 1.1.1.158) (UDP-N-acetylmuramate dehydrogenase) Length = 336 Score = 28.1 bits (61), Expect = 8.6 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 4/86 (4%) Frame = +1 Query: 112 VRNLTTIPILLPCLNSIKLKHSTKLYTRISKDEKKCLCQASPAETALSPEPGFLLQRQGE 291 ++ L T + C +K+ + +L T+ K CL L+ G +++ + Sbjct: 5 LQTLHTFALTSQCQQFVKINNLEQLKTQSFKPPF-CLLGEGSNTVFLNDYTGTVIKMATQ 63 Query: 292 GGQEKETANDHLLR----PNWQVCAS 357 G Q KE AND+L+ NW S Sbjct: 64 GVQIKERANDYLISVAAGENWHQLVS 89
>SMA2_LOXIN (P83046) Sphingomyelinase P2 precursor (EC 3.1.4.41) (SMase P2)| Length = 322 Score = 28.1 bits (61), Expect = 8.6 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = -1 Query: 109 LGLIAPLYASAATVGSCWSADGIDCCILFGL 17 +G + Y A G W +DGI C+L GL Sbjct: 214 IGDVGNAYKKAGISGHVWQSDGITNCLLRGL 244
>PZRN3_RAT (P68907) PDZ domain-containing RING finger protein 3 (Semaphorin| cytoplasmic domain-associated protein 3) (SEMACAP3 protein) Length = 1062 Score = 28.1 bits (61), Expect = 8.6 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%) Frame = +1 Query: 163 KLKHSTKLYTRISKDEKKCL-----CQASPAETALSPEPGFLLQRQGEGGQEKETANDHL 327 +L T+L + KD C+++P +SP+ L+R EG E TAN Sbjct: 739 ELSDITELPEKSDKDSSSAYNTGESCRSTPLTLEISPDNS--LRRVAEGSSEGATANMEA 796 Query: 328 LRPN 339 RP+ Sbjct: 797 YRPS 800 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,183,265 Number of Sequences: 219361 Number of extensions: 962441 Number of successful extensions: 2558 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 2500 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2556 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
