ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38h02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C07 gen... 143 5e-31
2dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 143 5e-31
3dbj|AK062550.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 5e-31
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 143 5e-31
5gb|AY110501.1| Zea mays CL35774_1 mRNA sequence 66 1e-07
6ref|NM_197845.1| Oryza sativa (japonica cultivar-group) putative... 64 4e-07
7gb|AC157802.8| Mus musculus chromosome 1, clone RP24-297D18, com... 46 0.091
8emb|CR450841.7| Zebrafish DNA sequence from clone DKEY-16N9 in l... 44 0.36
9emb|AL138964.11| Human DNA sequence from clone RP11-30C8 on chro... 44 0.36
10dbj|AP004978.1| Lotus japonicus genomic DNA, chromosome 4, clone... 44 0.36
11gb|AC158302.3| Mus musculus chromosome 5, clone RP24-61O18, comp... 42 1.4
12emb|Z73102.1|CEB0035 Caenorhabditis elegans Cosmid B0035, comple... 42 1.4
13gb|AC073068.8| Homo sapiens BAC clone RP11-159I18 from 7, comple... 42 1.4
14gb|AC157990.4| Mus musculus chromosome 5, clone RP24-307I24, com... 42 1.4
15ref|NM_069723.3| Caenorhabditis elegans B0035.1b (B0035.1) mRNA,... 42 1.4
16dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome 42 1.4
17gb|AC102730.15| Mus musculus chromosome 5, clone RP24-194J15, co... 42 1.4
18dbj|AP002455.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 42 1.4
19gb|AC152451.5| Mus musculus BAC clone RP24-309M5 from chromosome... 40 5.6
20ref|XM_421271.1| PREDICTED: Gallus gallus similar to FLJ00353 pr... 40 5.6
21gb|BC016420.1| Mus musculus tumor necrosis factor receptor super... 40 5.6
22ref|XM_957823.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.6
23ref|XM_326054.1| Neurospora crassa OR74A hypothetical protein (N... 40 5.6
24gb|AY386697.1| Oryctolagus cuniculus clone 225P18, complete sequ... 40 5.6
25gb|AY386695.1| Oryctolagus cuniculus clone 219D23, complete sequ... 40 5.6
26gb|AC122013.4| Mus musculus BAC clone RP24-357P7 from chromosome... 40 5.6
27gb|BC059025.1| Mus musculus RIKEN cDNA 2810011L19 gene, mRNA (cD... 40 5.6
28emb|AL353592.9| Human DNA sequence from clone RP11-569O12 on chr... 40 5.6
29gb|AC055753.21| Homo sapiens 3 BAC RP11-503I22 (Roswell Park Can... 40 5.6
30gb|DQ397638.1| Cenarchaeum symbiosum clone C16E09, complete sequ... 40 5.6
31dbj|AK134704.1| Mus musculus adult male medulla oblongata cDNA, ... 40 5.6
32dbj|AK045952.1| Mus musculus adult male corpora quadrigemina cDN... 40 5.6
33gb|AY043489.1| Mus musculus death receptor 6 mRNA, complete cds 40 5.6
34dbj|AK012713.1| Mus musculus 10, 11 days embryo whole body cDNA,... 40 5.6
35dbj|AK043823.1| Mus musculus 10 days neonate cortex cDNA, RIKEN ... 40 5.6
36dbj|AK033529.1| Mus musculus adult male colon cDNA, RIKEN full-l... 40 5.6
37gb|AC140476.2| Homo sapiens BAC clone RP11-1294H20 from 2, compl... 40 5.6
38gb|AC155811.2| Mus musculus BAC clone RP24-185C13 from chromosom... 40 5.6
39gb|AF322069.1|AF322069 Mus musculus DR6 mRNA, complete cds 40 5.6
40ref|XM_236992.3| PREDICTED: Rattus norvegicus tumor necrosis fac... 40 5.6
41gb|AC108462.5| Homo sapiens BAC clone RP13-542C4 from 2, complet... 40 5.6
42gb|AC108489.5| Homo sapiens BAC clone RP13-981I10 from 2, comple... 40 5.6
43dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome 40 5.6
44emb|AJ506238.1|ATH506238 Arabidopsis thaliana single-copy transg... 40 5.6
45gb|AC007918.2|F28J9 Arabidopsis thaliana chromosome 1 BAC F28J9 ... 40 5.6
46emb|AL109759.4|CNS018OW Human chromosome 14 DNA sequence BAC R-8... 40 5.6
47gb|AC127582.4| Mus musculus BAC clone RP24-89J3 from 12, complet... 40 5.6
48ref|NM_178589.2| Mus musculus tumor necrosis factor receptor sup... 40 5.6
49dbj|AB056766.1| Macaca fascicularis brain cDNA clone:QnpA-10908,... 40 5.6 
>gb|AC077693.19| Oryza sativa chromosome 10 BAC OSJNBa0095C07 genomic sequence, complete
              sequence
          Length = 187707

 Score =  143 bits (72), Expect = 5e-31
 Identities = 134/152 (88%), Gaps = 2/152 (1%)
 Strand = Plus / Plus

                                                                          
Query: 117    taatttaacaactataccaatacttctaccctgtctaaactccataaagttaaaacacag 176
              |||||||||| |||||||| |||| ||||||||||||||| ||||||||| |||||||||
Sbjct: 184270 taatttaacagctatacca-tactactaccctgtctaaaccccataaagt-aaaacacag 184327

                                                                          
Query: 177    cacaaaactgtacacccgcatatctaaagatgaaaagaagtgtttatgccaggcttctcc 236
              ||||||||||||||| |  ||||||| ||| | || |||||||| |||||||| ||||| 
Sbjct: 184328 cacaaaactgtacactcaaatatctagagaagcaatgaagtgttcatgccaggtttctct 184387

                                              
Query: 237    ggcagaaactgctttatctccggagcctggtt 268
              |||||||||||||| |||||  ||||||||||
Sbjct: 184388 ggcagaaactgcttcatctcaagagcctggtt 184419



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 52/60 (86%), Gaps = 2/60 (3%)
 Strand = Plus / Plus

                                                                          
Query: 4      aactaaaactccatagaccaaacaaaatgcagcagtc-aataccatcagcagaccagcat 62
              ||||||||| ||||| | || ||||||||||| || | |||||||||| |||||||||||
Sbjct: 184160 aactaaaacaccata-atcacacaaaatgcagaagcctaataccatcaccagaccagcat 184218
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  143 bits (72), Expect = 5e-31
 Identities = 134/152 (88%), Gaps = 2/152 (1%)
 Strand = Plus / Plus

                                                                            
Query: 117      taatttaacaactataccaatacttctaccctgtctaaactccataaagttaaaacacag 176
                |||||||||| |||||||| |||| ||||||||||||||| ||||||||| |||||||||
Sbjct: 22179326 taatttaacagctatacca-tactactaccctgtctaaaccccataaagt-aaaacacag 22179383

                                                                            
Query: 177      cacaaaactgtacacccgcatatctaaagatgaaaagaagtgtttatgccaggcttctcc 236
                ||||||||||||||| |  ||||||| ||| | || |||||||| |||||||| ||||| 
Sbjct: 22179384 cacaaaactgtacactcaaatatctagagaagcaatgaagtgttcatgccaggtttctct 22179443

                                                
Query: 237      ggcagaaactgctttatctccggagcctggtt 268
                |||||||||||||| |||||  ||||||||||
Sbjct: 22179444 ggcagaaactgcttcatctcaagagcctggtt 22179475



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 52/60 (86%), Gaps = 2/60 (3%)
 Strand = Plus / Plus

                                                                            
Query: 4        aactaaaactccatagaccaaacaaaatgcagcagtc-aataccatcagcagaccagcat 62
                ||||||||| ||||| | || ||||||||||| || | |||||||||| |||||||||||
Sbjct: 22179216 aactaaaacaccata-atcacacaaaatgcagaagcctaataccatcaccagaccagcat 22179274
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>dbj|AK062550.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-G12, full
           insert sequence
          Length = 722

 Score =  143 bits (72), Expect = 5e-31
 Identities = 134/152 (88%), Gaps = 2/152 (1%)
 Strand = Plus / Minus

                                                                       
Query: 117 taatttaacaactataccaatacttctaccctgtctaaactccataaagttaaaacacag 176
           |||||||||| |||||||| |||| ||||||||||||||| ||||||||| |||||||||
Sbjct: 561 taatttaacagctatacca-tactactaccctgtctaaaccccataaagt-aaaacacag 504

                                                                       
Query: 177 cacaaaactgtacacccgcatatctaaagatgaaaagaagtgtttatgccaggcttctcc 236
           ||||||||||||||| |  ||||||| ||| | || |||||||| |||||||| ||||| 
Sbjct: 503 cacaaaactgtacactcaaatatctagagaagcaatgaagtgttcatgccaggtttctct 444

                                           
Query: 237 ggcagaaactgctttatctccggagcctggtt 268
           |||||||||||||| |||||  ||||||||||
Sbjct: 443 ggcagaaactgcttcatctcaagagcctggtt 412



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 52/60 (86%), Gaps = 2/60 (3%)
 Strand = Plus / Minus

                                                                       
Query: 4   aactaaaactccatagaccaaacaaaatgcagcagtc-aataccatcagcagaccagcat 62
           ||||||||| ||||| | || ||||||||||| || | |||||||||| |||||||||||
Sbjct: 671 aactaaaacaccata-atcacacaaaatgcagaagcctaataccatcaccagaccagcat 613
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  143 bits (72), Expect = 5e-31
 Identities = 134/152 (88%), Gaps = 2/152 (1%)
 Strand = Plus / Plus

                                                                            
Query: 117      taatttaacaactataccaatacttctaccctgtctaaactccataaagttaaaacacag 176
                |||||||||| |||||||| |||| ||||||||||||||| ||||||||| |||||||||
Sbjct: 22191389 taatttaacagctatacca-tactactaccctgtctaaaccccataaagt-aaaacacag 22191446

                                                                            
Query: 177      cacaaaactgtacacccgcatatctaaagatgaaaagaagtgtttatgccaggcttctcc 236
                ||||||||||||||| |  ||||||| ||| | || |||||||| |||||||| ||||| 
Sbjct: 22191447 cacaaaactgtacactcaaatatctagagaagcaatgaagtgttcatgccaggtttctct 22191506

                                                
Query: 237      ggcagaaactgctttatctccggagcctggtt 268
                |||||||||||||| |||||  ||||||||||
Sbjct: 22191507 ggcagaaactgcttcatctcaagagcctggtt 22191538



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 52/60 (86%), Gaps = 2/60 (3%)
 Strand = Plus / Plus

                                                                            
Query: 4        aactaaaactccatagaccaaacaaaatgcagcagtc-aataccatcagcagaccagcat 62
                ||||||||| ||||| | || ||||||||||| || | |||||||||| |||||||||||
Sbjct: 22191279 aactaaaacaccata-atcacacaaaatgcagaagcctaataccatcaccagaccagcat 22191337
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>gb|AY110501.1| Zea mays CL35774_1 mRNA sequence
          Length = 866

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 100/122 (81%), Gaps = 9/122 (7%)
 Strand = Plus / Plus

                                                                       
Query: 136 atacttctaccctgtctaaactccataaagttaaaacacagcacaaaactgtacacccgc 195
           ||||||||||||||||||||||||||| ||        | |||||||||||||||| |||
Sbjct: 128 atacttctaccctgtctaaactccatacag--------ctgcacaaaactgtacactcgc 179

                                                                       
Query: 196 atatctaaagatgaaaagaagtgtttatgccaggcttctccggcagaaactgctttatct 255
           | ||||||||  |  |  ||||||||||||| |||||||||||||| || ||||| ||||
Sbjct: 180 aaatctaaag-gggcattaagtgtttatgcctggcttctccggcaggaattgcttcatct 238

             
Query: 256 cc 257
           ||
Sbjct: 239 cc 240
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>ref|NM_197845.1| Oryza sativa (japonica cultivar-group) putative DNA-binding protein
            (OSJNBa0095C07.35), mRNA
          Length = 2949

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 213  gaagtgtttatgccaggcttctccggcagaaactgctttatctccggagcctggtt 268
            |||||||| |||||||| ||||| |||||||||||||| |||||  ||||||||||
Sbjct: 2936 gaagtgttcatgccaggtttctctggcagaaactgcttcatctcaagagcctggtt 2881
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>gb|AC157802.8| Mus musculus chromosome 1, clone RP24-297D18, complete sequence
          Length = 154309

 Score = 46.1 bits (23), Expect = 0.091
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 299   aagagaaagagacagcgaatgat 321
             |||||||||||||||||||||||
Sbjct: 28806 aagagaaagagacagcgaatgat 28828
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>emb|CR450841.7| Zebrafish DNA sequence from clone DKEY-16N9 in linkage group 11,
            complete sequence
          Length = 263287

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 371  cagggatagtgacaacagaggggaggatcc 400
            |||||||||||||||||| || ||||||||
Sbjct: 4830 cagggatagtgacaacaggggtgaggatcc 4801
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>emb|AL138964.11| Human DNA sequence from clone RP11-30C8 on chromosome 13 Contains a
             pseudogene similar to part of a serine/threonine kinase
             and the 3' end of a novel gene, complete sequence
          Length = 44623

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 282   ccagggagagggaggccaagag 303
             ||||||||||||||||||||||
Sbjct: 38227 ccagggagagggaggccaagag 38206
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>dbj|AP004978.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT44L05, TM0162a,
             complete sequence
          Length = 92619

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 16    atagaccaaacaaaatgcagca 37
             ||||||||||||||||||||||
Sbjct: 36813 atagaccaaacaaaatgcagca 36792
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>gb|AC158302.3| Mus musculus chromosome 5, clone RP24-61O18, complete sequence
          Length = 215326

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 168   aaaacacagcacaaaactgta 188
             |||||||||||||||||||||
Sbjct: 16656 aaaacacagcacaaaactgta 16676
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>emb|Z73102.1|CEB0035 Caenorhabditis elegans Cosmid B0035, complete sequence
          Length = 39483

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 306   agagacagcgaatgatcatct 326
             |||||||||||||||||||||
Sbjct: 17992 agagacagcgaatgatcatct 17972
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>gb|AC073068.8| Homo sapiens BAC clone RP11-159I18 from 7, complete sequence
          Length = 171058

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 292    ggaggccaagagaaagagaca 312
              |||||||||||||||||||||
Sbjct: 133098 ggaggccaagagaaagagaca 133118
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>gb|AC157990.4| Mus musculus chromosome 5, clone RP24-307I24, complete sequence
          Length = 153860

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 168   aaaacacagcacaaaactgta 188
             |||||||||||||||||||||
Sbjct: 20635 aaaacacagcacaaaactgta 20615
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>ref|NM_069723.3| Caenorhabditis elegans B0035.1b (B0035.1) mRNA, complete cds
          Length = 1215

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 306 agagacagcgaatgatcatct 326
           |||||||||||||||||||||
Sbjct: 999 agagacagcgaatgatcatct 979
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>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome
          Length = 1669695

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 276    gcaacgccagggagagggagg 296
              |||||||||||||||||||||
Sbjct: 998237 gcaacgccagggagagggagg 998217
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>gb|AC102730.15| Mus musculus chromosome 5, clone RP24-194J15, complete sequence
          Length = 167135

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 168   aaaacacagcacaaaactgta 188
             |||||||||||||||||||||
Sbjct: 92526 aaaacacagcacaaaactgta 92546
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>dbj|AP002455.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-93M11, complete
             sequence
          Length = 64000

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 283   cagggagagggaggccaagagaaag 307
             ||||||||||||| |||||||||||
Sbjct: 41343 cagggagagggagaccaagagaaag 41319
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>gb|AC152451.5| Mus musculus BAC clone RP24-309M5 from chromosome 12, complete sequence
          Length = 145113

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 291   gggaggccaagagaaagaga 310
             ||||||||||||||||||||
Sbjct: 46684 gggaggccaagagaaagaga 46703
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>ref|XM_421271.1| PREDICTED: Gallus gallus similar to FLJ00353 protein (LOC423356),
           mRNA
          Length = 7209

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 61  atgaaccaacagtggcagca 80
           ||||||||||||||||||||
Sbjct: 832 atgaaccaacagtggcagca 851
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>gb|BC016420.1| Mus musculus tumor necrosis factor receptor superfamily, member 21,
            mRNA (cDNA clone MGC:25901 IMAGE:4220624), complete cds
          Length = 2748

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 273  tttgcaacgccagggagagggagg 296
            ||||||||||||| ||||||||||
Sbjct: 1701 tttgcaacgccagcgagagggagg 1724
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>ref|XM_957823.1| Neurospora crassa OR74A hypothetical protein (NCU06200.1) partial
            mRNA
          Length = 1497

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 284  agggagagggaggccaagag 303
            ||||||||||||||||||||
Sbjct: 1447 agggagagggaggccaagag 1466
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>ref|XM_326054.1| Neurospora crassa OR74A hypothetical protein (NCU06200.1) partial
            mRNA
          Length = 1497

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 284  agggagagggaggccaagag 303
            ||||||||||||||||||||
Sbjct: 1447 agggagagggaggccaagag 1466
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>gb|AY386697.1| Oryctolagus cuniculus clone 225P18, complete sequence
          Length = 139446

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    gcctggtttccttttgcaac 280
              ||||||||||||||||||||
Sbjct: 124327 gcctggtttccttttgcaac 124308
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>gb|AY386695.1| Oryctolagus cuniculus clone 219D23, complete sequence
          Length = 137302

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 261   gcctggtttccttttgcaac 280
             ||||||||||||||||||||
Sbjct: 31218 gcctggtttccttttgcaac 31199
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>gb|AC122013.4| Mus musculus BAC clone RP24-357P7 from chromosome 12, complete sequence
          Length = 175788

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 291   gggaggccaagagaaagaga 310
             ||||||||||||||||||||
Sbjct: 40730 gggaggccaagagaaagaga 40711
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>gb|BC059025.1| Mus musculus RIKEN cDNA 2810011L19 gene, mRNA (cDNA clone
           IMAGE:6810678), partial cds
          Length = 3306

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 gggaggccaagagaaagaga 310
           ||||||||||||||||||||
Sbjct: 766 gggaggccaagagaaagaga 785
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>emb|AL353592.9| Human DNA sequence from clone RP11-569O12 on chromosome 13, complete
             sequence
          Length = 63325

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   atgaaaagaagtgtttatgc 225
             ||||||||||||||||||||
Sbjct: 56096 atgaaaagaagtgtttatgc 56077
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>gb|AC055753.21| Homo sapiens 3 BAC RP11-503I22 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 167662

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 8     aaaactccatagaccaaacaaaat 31
             |||||||||||||| |||||||||
Sbjct: 98004 aaaactccatagacaaaacaaaat 98027
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>gb|DQ397638.1| Cenarchaeum symbiosum clone C16E09, complete sequence
          Length = 40387

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   ctccggcagaaactgcttta 252
             ||||||||||||||||||||
Sbjct: 35550 ctccggcagaaactgcttta 35531
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>dbj|AK134704.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
            enriched library, clone:6330530E01 product:tumor necrosis
            factor receptor superfamily, member 21, full insert
            sequence
          Length = 3598

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 273  tttgcaacgccagggagagggagg 296
            ||||||||||||| ||||||||||
Sbjct: 1723 tttgcaacgccagcgagagggagg 1746
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>dbj|AK045952.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN
           full-length enriched library, clone:B230326M03
           product:unclassifiable, full insert sequence
          Length = 2878

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 gggaggccaagagaaagaga 310
           ||||||||||||||||||||
Sbjct: 520 gggaggccaagagaaagaga 539
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>gb|AY043489.1| Mus musculus death receptor 6 mRNA, complete cds
          Length = 1968

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 273  tttgcaacgccagggagagggagg 296
            ||||||||||||| ||||||||||
Sbjct: 1310 tttgcaacgccagcgagagggagg 1333
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>dbj|AK012713.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:2810011L19 product:RIKEN cDNA
           2810011L19 gene, full insert sequence
          Length = 1108

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 291 gggaggccaagagaaagaga 310
           ||||||||||||||||||||
Sbjct: 414 gggaggccaagagaaagaga 433
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>dbj|AK043823.1| Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched
            library, clone:A830037A05 product:Death Receptor 6, full
            insert sequence
          Length = 3628

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 273  tttgcaacgccagggagagggagg 296
            ||||||||||||| ||||||||||
Sbjct: 1754 tttgcaacgccagcgagagggagg 1777
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>dbj|AK033529.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
            library, clone:9030604G24 product:death receptor 6, full
            insert sequence
          Length = 3597

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 273  tttgcaacgccagggagagggagg 296
            ||||||||||||| ||||||||||
Sbjct: 1728 tttgcaacgccagcgagagggagg 1751
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>gb|AC140476.2| Homo sapiens BAC clone RP11-1294H20 from 2, complete sequence
          Length = 172117

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   cagggagagggaggccaaga 302
             ||||||||||||||||||||
Sbjct: 93841 cagggagagggaggccaaga 93822
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>gb|AC155811.2| Mus musculus BAC clone RP24-185C13 from chromosome 12, complete
             sequence
          Length = 152790

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 152   taaactccataaagttaaaa 171
             ||||||||||||||||||||
Sbjct: 96840 taaactccataaagttaaaa 96821
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>gb|AF322069.1|AF322069 Mus musculus DR6 mRNA, complete cds
          Length = 1968

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 273  tttgcaacgccagggagagggagg 296
            ||||||||||||| ||||||||||
Sbjct: 1310 tttgcaacgccagcgagagggagg 1333
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>ref|XM_236992.3| PREDICTED: Rattus norvegicus tumor necrosis factor receptor
            superfamily, member 21 (predicted) (Tnfrsf21_predicted),
            mRNA
          Length = 3753

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 273  tttgcaacgccagggagagggagg 296
            ||||||||||||| ||||||||||
Sbjct: 3095 tttgcaacgccagcgagagggagg 3118
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>gb|AC108462.5| Homo sapiens BAC clone RP13-542C4 from 2, complete sequence
          Length = 161648

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   cagggagagggaggccaaga 302
             ||||||||||||||||||||
Sbjct: 74971 cagggagagggaggccaaga 74952
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>gb|AC108489.5| Homo sapiens BAC clone RP13-981I10 from 2, complete sequence
          Length = 167463

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   cagggagagggaggccaaga 302
             ||||||||||||||||||||
Sbjct: 48866 cagggagagggaggccaaga 48847
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>dbj|BA000001.2| Pyrococcus horikoshii OT3 DNA, complete genome
          Length = 1738505

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 234    tccggcagaaactgctttatctcc 257
              |||||||| |||||||||||||||
Sbjct: 162494 tccggcaggaactgctttatctcc 162471
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>emb|AJ506238.1|ATH506238 Arabidopsis thaliana single-copy transgenic T-DNA insertion line,
           clone MDL-ArAr-126_LB
          Length = 737

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 195 catatctaaagatgaaaaga 214
           ||||||||||||||||||||
Sbjct: 593 catatctaaagatgaaaaga 574
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>gb|AC007918.2|F28J9 Arabidopsis thaliana chromosome 1 BAC F28J9 sequence, complete sequence
          Length = 115963

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   catatctaaagatgaaaaga 214
             ||||||||||||||||||||
Sbjct: 37824 catatctaaagatgaaaaga 37843
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>emb|AL109759.4|CNS018OW Human chromosome 14 DNA sequence BAC R-898B23 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 201794

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 204    agatgaaaagaagtgtttat 223
              ||||||||||||||||||||
Sbjct: 173207 agatgaaaagaagtgtttat 173188
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>gb|AC127582.4| Mus musculus BAC clone RP24-89J3 from 12, complete sequence
          Length = 217949

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    taaactccataaagttaaaa 171
              ||||||||||||||||||||
Sbjct: 200088 taaactccataaagttaaaa 200107
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>ref|NM_178589.2| Mus musculus tumor necrosis factor receptor superfamily, member 21
            (Tnfrsf21), mRNA
          Length = 3628

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 273  tttgcaacgccagggagagggagg 296
            ||||||||||||| ||||||||||
Sbjct: 1754 tttgcaacgccagcgagagggagg 1777
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>dbj|AB056766.1| Macaca fascicularis brain cDNA clone:QnpA-10908, full insert
           sequence
          Length = 2797

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 283 cagggagagggaggccaaga 302
           ||||||||||||||||||||
Sbjct: 970 cagggagagggaggccaaga 951


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,731,297
Number of Sequences: 3902068
Number of extensions: 4731297
Number of successful extensions: 97960
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 97846
Number of HSP's gapped (non-prelim): 110
length of query: 418
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 396
effective length of database: 17,147,199,772
effective search space: 6790291109712
effective search space used: 6790291109712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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