Clone Name | rbastl38g10 |
---|---|
Clone Library Name | barley_pub |
>gb|AC136636.6| Mus musculus BAC clone RP24-183E22 from chromosome 1, complete sequence Length = 182542 Score = 44.1 bits (22), Expect = 0.29 Identities = 25/26 (96%) Strand = Plus / Minus Query: 74 tgagaattcagtaaattttgtcacaa 99 |||||||||| ||||||||||||||| Sbjct: 124253 tgagaattcactaaattttgtcacaa 124228
>ref|XM_808018.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053506155.20) partial mRNA Length = 1503 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 4 cgcaaaggttcaacgagatcgctctatta 32 |||||||||||||| |||| ||||||||| Sbjct: 726 cgcaaaggttcaaccagatggctctatta 754
>gb|AY691179.1| Cirrhinus mrigala growth hormone receptor mRNA, complete cds Length = 2290 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 tcgcaacagattgtgcctttggac 252 |||||||||||| ||||||||||| Sbjct: 233 tcgcaacagattttgcctttggac 256
>gb|AY691178.1| Catla catla growth hormone receptor mRNA, complete cds Length = 2291 Score = 40.1 bits (20), Expect = 4.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 229 tcgcaacagattgtgcctttggac 252 |||||||||||| ||||||||||| Sbjct: 236 tcgcaacagattttgcctttggac 259
>emb|AL161728.25| Human DNA sequence from clone RP11-342C23 on chromosome 9 Contains the FBP1 gene for Fructose-1,6-bisphosphatase 1, a novel gene, the FBP2 gene for Fructose-1,6-bisphosphatase 2, a gene for a putative novel protein and one CpG island, complete sequence Length = 170532 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 gtgcctttggactgcagaac 260 |||||||||||||||||||| Sbjct: 26274 gtgcctttggactgcagaac 26255
>gb|AC093027.12| Homo sapiens 12q BAC RP11-701B6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162322 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 acagattgtgccttaaaata 183 |||||||||||||||||||| Sbjct: 70670 acagattgtgccttaaaata 70651
>gb|AC007497.6| Homo sapiens chromosome 16 clone RP11-36I17, complete sequence Length = 164269 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 agaatccagtaaattttgtc 160 |||||||||||||||||||| Sbjct: 152335 agaatccagtaaattttgtc 152316
>gb|AC090483.3|AC090483 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0050M22, from chromosome 10, complete sequence Length = 145417 Score = 40.1 bits (20), Expect = 4.6 Identities = 53/64 (82%) Strand = Plus / Plus Query: 269 gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 328 ||||||||||| || | || |||| ||||||||||| ||| | |||||||||||||| Sbjct: 39508 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 39567 Query: 329 tgac 332 |||| Sbjct: 39568 tgac 39571
>dbj|AK048297.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched library, clone:C130047C22 product:ATP-binding cassette, sub-family B (MDR/TAP), member 1B, full insert sequence Length = 3025 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 accattattgttctcactga 76 |||||||||||||||||||| Sbjct: 606 accattattgttctcactga 625
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.6 Identities = 53/64 (82%) Strand = Plus / Plus Query: 269 gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 328 ||||||||||| || | || |||| ||||||||||| ||| | |||||||||||||| Sbjct: 9406024 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 9406083 Query: 329 tgac 332 |||| Sbjct: 9406084 tgac 9406087
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 cagtaaattttgtcacaaca 101 |||||||||||||||||||| Sbjct: 9117989 cagtaaattttgtcacaaca 9118008
>gb|AC007342.6| Homo sapiens chromosome 16 clone RP11-44F14, complete sequence Length = 177788 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 agaatccagtaaattttgtc 160 |||||||||||||||||||| Sbjct: 17862 agaatccagtaaattttgtc 17843
>dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0499C11 Length = 151369 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 cagtaaattttgtcacaaca 101 |||||||||||||||||||| Sbjct: 146996 cagtaaattttgtcacaaca 147015
>dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0011D01 Length = 168655 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 82 cagtaaattttgtcacaaca 101 |||||||||||||||||||| Sbjct: 18371 cagtaaattttgtcacaaca 18390
>gb|AC154100.7| Mus musculus chromosome 5, clone RP24-154F3, complete sequence Length = 200945 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 accattattgttctcactga 76 |||||||||||||||||||| Sbjct: 87394 accattattgttctcactga 87375
>ref|XM_309518.2| Anopheles gambiae str. PEST ENSANGP00000012511 (ENSANGG00000010022), partial mRNA Length = 660 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 271 acattctcacagtggacagg 290 |||||||||||||||||||| Sbjct: 125 acattctcacagtggacagg 144
>dbj|AK101675.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058F11, full insert sequence Length = 2868 Score = 40.1 bits (20), Expect = 4.6 Identities = 53/64 (82%) Strand = Plus / Minus Query: 269 gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 328 ||||||||||| || | || |||| ||||||||||| ||| | |||||||||||||| Sbjct: 2613 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 2554 Query: 329 tgac 332 |||| Sbjct: 2553 tgac 2550
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.6 Identities = 53/64 (82%) Strand = Plus / Plus Query: 269 gtacattctcacagtggacaggtctccaagcacttcaactccgagttgaacctgtaaact 328 ||||||||||| || | || |||| ||||||||||| ||| | |||||||||||||| Sbjct: 9412063 gtacattctcagagagcccaagtcttcaagcacttcagatccttgctgaacctgtaaact 9412122 Query: 329 tgac 332 |||| Sbjct: 9412123 tgac 9412126
>gb|AC151474.2| Mus musculus BAC clone RP23-338P12 from 5, complete sequence Length = 226403 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 accattattgttctcactga 76 |||||||||||||||||||| Sbjct: 86944 accattattgttctcactga 86925 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,831,601 Number of Sequences: 3902068 Number of extensions: 2831601 Number of successful extensions: 49368 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49285 Number of HSP's gapped (non-prelim): 83 length of query: 346 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 324 effective length of database: 17,147,199,772 effective search space: 5555692726128 effective search space used: 5555692726128 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)