Clone Name | rbastl38g09 |
---|---|
Clone Library Name | barley_pub |
>gb|BC078449.1| Mus musculus solute carrier family 18 (vesicular monoamine), member 2, mRNA (cDNA clone MGC:90556 IMAGE:5705966), complete cds Length = 3702 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 tctccaaatagttctgcaat 32 |||||||||||||||||||| Sbjct: 3375 tctccaaatagttctgcaat 3356
>gb|AC135016.3| Mus musculus BAC clone RP24-244B4 from chromosome 18, complete sequence Length = 177193 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 cattttcatagtgattgata 324 |||||||||||||||||||| Sbjct: 157764 cattttcatagtgattgata 157783
>gb|AC127699.4| Mus musculus BAC clone RP24-114P21 from chromosome 7, complete sequence Length = 152811 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ttccttttcttcctagtctttcat 152 ||||||||||||||||||| |||| Sbjct: 67408 ttccttttcttcctagtctatcat 67385
>emb|BX936420.9| Zebrafish DNA sequence from clone DKEY-7F16 in linkage group 3, complete sequence Length = 168285 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 296 tgcagataacattttcatag 315 |||||||||||||||||||| Sbjct: 26411 tgcagataacattttcatag 26430
>ref|XM_726170.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03268) partial mRNA Length = 2193 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 ttgattggaagtaattcaat 379 |||||||||||||||||||| Sbjct: 1444 ttgattggaagtaattcaat 1463
>emb|AL390785.15| Human DNA sequence from clone RP11-325N9 on chromosome 10, complete sequence Length = 203169 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 248 taaaacatctagaaatacag 267 |||||||||||||||||||| Sbjct: 195765 taaaacatctagaaatacag 195784
>ref|XM_963591.1| PREDICTED: Tribolium castaneum similar to CG14905-PA (LOC657111), mRNA Length = 2931 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ttccttttcttcctagtctttcat 152 ||||||||||||| |||||||||| Sbjct: 816 ttccttttcttccaagtctttcat 793
>ref|XM_794605.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein LOC574952 (LOC574952), mRNA Length = 970 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 364 ttggaagtaattcaatgtca 383 |||||||||||||||||||| Sbjct: 591 ttggaagtaattcaatgtca 572
>emb|AL732488.7| Zebrafish DNA sequence from clone RP71-1C10 in linkage group 12 Contains part of a novel ring finger gene, a novel zinc finger pseudogene, a novel zinc finger gene and a novel gene similar to valop (vertebrate ancient long opsin), complete sequence Length = 165151 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 tccacaacagaaatggccaaaata 225 ||||| |||||||||||||||||| Sbjct: 62925 tccaccacagaaatggccaaaata 62948
>dbj|AK078096.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330443F13 product:unclassifiable, full insert sequence Length = 2074 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 tctccaaatagttctgcaat 32 |||||||||||||||||||| Sbjct: 1774 tctccaaatagttctgcaat 1755
>dbj|AK088487.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN full-length enriched library, clone:E430018M18 product:unclassifiable, full insert sequence Length = 3702 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tctccaaatagttctgcaat 32 |||||||||||||||||||| Sbjct: 1220 tctccaaatagttctgcaat 1239
>dbj|AK035644.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length enriched library, clone:9530080J18 product:reserpine-sensitive vesicular monoamine transporter homolog [Rattus norvegicus], full insert sequence Length = 3787 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 tctccaaatagttctgcaat 32 |||||||||||||||||||| Sbjct: 3488 tctccaaatagttctgcaat 3469
>emb|AL954662.13| Mouse DNA sequence from clone RP23-348L16 on chromosome 2, complete sequence Length = 132427 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gctttcataaggtccacaac 209 |||||||||||||||||||| Sbjct: 28037 gctttcataaggtccacaac 28018
>gb|AC093350.15| Mus musculus chromosome 3, clone RP23-16G3, complete sequence Length = 200326 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 aaatacagagagcctaactgagaa 283 |||||||||||| ||||||||||| Sbjct: 118021 aaatacagagagtctaactgagaa 118044
>gb|AC139040.8| Mus musculus chromosome 19, clone RP23-292H20, complete sequence Length = 206197 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tctccaaatagttctgcaat 32 |||||||||||||||||||| Sbjct: 85300 tctccaaatagttctgcaat 85319
>emb|BX004985.6| Mouse DNA sequence from clone RP23-320O16 on chromosome 2, complete sequence Length = 208765 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 ttcaatgtcagcttccaagt 393 |||||||||||||||||||| Sbjct: 38479 ttcaatgtcagcttccaagt 38460
>emb|CR847564.6| Zebrafish DNA sequence from clone DKEY-190E10 in linkage group 14, complete sequence Length = 122704 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 202 tccacaacagaaatggccaaaata 225 ||||| |||||||||||||||||| Sbjct: 92538 tccaccacagaaatggccaaaata 92561 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,639,649 Number of Sequences: 3902068 Number of extensions: 3639649 Number of successful extensions: 72338 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 72299 Number of HSP's gapped (non-prelim): 39 length of query: 433 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 411 effective length of database: 17,147,199,772 effective search space: 7047499106292 effective search space used: 7047499106292 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)