ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38g09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BC078449.1| Mus musculus solute carrier family 18 (vesicular ... 40 5.8
2gb|AC135016.3| Mus musculus BAC clone RP24-244B4 from chromosome... 40 5.8
3gb|AC127699.4| Mus musculus BAC clone RP24-114P21 from chromosom... 40 5.8
4emb|BX936420.9| Zebrafish DNA sequence from clone DKEY-7F16 in l... 40 5.8
5ref|XM_726170.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 5.8
6emb|AL390785.15| Human DNA sequence from clone RP11-325N9 on chr... 40 5.8
7ref|XM_963591.1| PREDICTED: Tribolium castaneum similar to CG149... 40 5.8
8ref|XM_794605.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 40 5.8
9emb|AL732488.7| Zebrafish DNA sequence from clone RP71-1C10 in l... 40 5.8
10dbj|AK078096.1| Mus musculus adult male medulla oblongata cDNA, ... 40 5.8
11dbj|AK088487.1| Mus musculus 2 days neonate thymus thymic cells ... 40 5.8
12dbj|AK035644.1| Mus musculus adult male urinary bladder cDNA, RI... 40 5.8
13emb|AL954662.13| Mouse DNA sequence from clone RP23-348L16 on ch... 40 5.8
14gb|AC093350.15| Mus musculus chromosome 3, clone RP23-16G3, comp... 40 5.8
15gb|AC139040.8| Mus musculus chromosome 19, clone RP23-292H20, co... 40 5.8
16emb|BX004985.6| Mouse DNA sequence from clone RP23-320O16 on chr... 40 5.8
17emb|CR847564.6| Zebrafish DNA sequence from clone DKEY-190E10 in... 40 5.8

>gb|BC078449.1| Mus musculus solute carrier family 18 (vesicular monoamine), member
            2, mRNA (cDNA clone MGC:90556 IMAGE:5705966), complete
            cds
          Length = 3702

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   tctccaaatagttctgcaat 32
            ||||||||||||||||||||
Sbjct: 3375 tctccaaatagttctgcaat 3356



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>gb|AC135016.3| Mus musculus BAC clone RP24-244B4 from chromosome 18, complete sequence
          Length = 177193

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 305    cattttcatagtgattgata 324
              ||||||||||||||||||||
Sbjct: 157764 cattttcatagtgattgata 157783



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>gb|AC127699.4| Mus musculus BAC clone RP24-114P21 from chromosome 7, complete sequence
          Length = 152811

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 129   ttccttttcttcctagtctttcat 152
             ||||||||||||||||||| ||||
Sbjct: 67408 ttccttttcttcctagtctatcat 67385



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>emb|BX936420.9| Zebrafish DNA sequence from clone DKEY-7F16 in linkage group 3,
             complete sequence
          Length = 168285

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 296   tgcagataacattttcatag 315
             ||||||||||||||||||||
Sbjct: 26411 tgcagataacattttcatag 26430



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>ref|XM_726170.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY03268)
            partial mRNA
          Length = 2193

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 360  ttgattggaagtaattcaat 379
            ||||||||||||||||||||
Sbjct: 1444 ttgattggaagtaattcaat 1463



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>emb|AL390785.15| Human DNA sequence from clone RP11-325N9 on chromosome 10, complete
              sequence
          Length = 203169

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 248    taaaacatctagaaatacag 267
              ||||||||||||||||||||
Sbjct: 195765 taaaacatctagaaatacag 195784



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>ref|XM_963591.1| PREDICTED: Tribolium castaneum similar to CG14905-PA (LOC657111),
           mRNA
          Length = 2931

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 129 ttccttttcttcctagtctttcat 152
           ||||||||||||| ||||||||||
Sbjct: 816 ttccttttcttccaagtctttcat 793



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>ref|XM_794605.1| PREDICTED: Strongylocentrotus purpuratus hypothetical protein
           LOC574952 (LOC574952), mRNA
          Length = 970

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 364 ttggaagtaattcaatgtca 383
           ||||||||||||||||||||
Sbjct: 591 ttggaagtaattcaatgtca 572



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>emb|AL732488.7| Zebrafish DNA sequence from clone RP71-1C10 in linkage group 12
             Contains part of a novel ring finger gene, a novel zinc
             finger pseudogene, a novel zinc finger gene and a novel
             gene similar to valop (vertebrate ancient long opsin),
             complete sequence
          Length = 165151

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 202   tccacaacagaaatggccaaaata 225
             ||||| ||||||||||||||||||
Sbjct: 62925 tccaccacagaaatggccaaaata 62948



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>dbj|AK078096.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
            enriched library, clone:6330443F13
            product:unclassifiable, full insert sequence
          Length = 2074

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   tctccaaatagttctgcaat 32
            ||||||||||||||||||||
Sbjct: 1774 tctccaaatagttctgcaat 1755



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>dbj|AK088487.1| Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
            full-length enriched library, clone:E430018M18
            product:unclassifiable, full insert sequence
          Length = 3702

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 13   tctccaaatagttctgcaat 32
            ||||||||||||||||||||
Sbjct: 1220 tctccaaatagttctgcaat 1239



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>dbj|AK035644.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
            enriched library, clone:9530080J18
            product:reserpine-sensitive vesicular monoamine
            transporter homolog [Rattus norvegicus], full insert
            sequence
          Length = 3787

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 13   tctccaaatagttctgcaat 32
            ||||||||||||||||||||
Sbjct: 3488 tctccaaatagttctgcaat 3469



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>emb|AL954662.13| Mouse DNA sequence from clone RP23-348L16 on chromosome 2, complete
             sequence
          Length = 132427

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 190   gctttcataaggtccacaac 209
             ||||||||||||||||||||
Sbjct: 28037 gctttcataaggtccacaac 28018



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>gb|AC093350.15| Mus musculus chromosome 3, clone RP23-16G3, complete sequence
          Length = 200326

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 260    aaatacagagagcctaactgagaa 283
              |||||||||||| |||||||||||
Sbjct: 118021 aaatacagagagtctaactgagaa 118044



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>gb|AC139040.8| Mus musculus chromosome 19, clone RP23-292H20, complete sequence
          Length = 206197

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    tctccaaatagttctgcaat 32
             ||||||||||||||||||||
Sbjct: 85300 tctccaaatagttctgcaat 85319



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>emb|BX004985.6| Mouse DNA sequence from clone RP23-320O16 on chromosome 2, complete
             sequence
          Length = 208765

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   ttcaatgtcagcttccaagt 393
             ||||||||||||||||||||
Sbjct: 38479 ttcaatgtcagcttccaagt 38460



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>emb|CR847564.6| Zebrafish DNA sequence from clone DKEY-190E10 in linkage group 14,
             complete sequence
          Length = 122704

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 202   tccacaacagaaatggccaaaata 225
             ||||| ||||||||||||||||||
Sbjct: 92538 tccaccacagaaatggccaaaata 92561


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,639,649
Number of Sequences: 3902068
Number of extensions: 3639649
Number of successful extensions: 72338
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 72299
Number of HSP's gapped (non-prelim): 39
length of query: 433
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 411
effective length of database: 17,147,199,772
effective search space: 7047499106292
effective search space used: 7047499106292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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