ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38g05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1AMGO1_MOUSE (Q80ZD8) Amphoterin-induced protein 1 precursor (Ali... 33 0.35
2AMGO1_RAT (Q80ZD7) Amphoterin-induced protein 1 precursor (Alivi... 30 2.3
3ADPGK_MOUSE (Q8VDL4) ADP-dependent glucokinase (EC 2.7.1.147) (A... 29 5.0
4TTBK2_HUMAN (Q6IQ55) Tau-tubulin kinase 2 (EC 2.7.11.1) 29 5.0
5PSL2_MOUSE (Q9JJF9) Signal peptide peptidase-like 2A (EC 3.4.23.... 29 6.6
6AMGO1_HUMAN (Q86WK6) Amphoterin-induced protein 1 precursor (Ali... 28 8.6
7GBLP_MEDSA (O24076) Guanine nucleotide-binding protein beta subu... 28 8.6
8HEM6_PHOLL (Q7N6Z9) Coproporphyrinogen 3 oxidase, aerobic (EC 1.... 28 8.6

>AMGO1_MOUSE (Q80ZD8) Amphoterin-induced protein 1 precursor (Alivin-2)|
          Length = 492

 Score = 33.1 bits (74), Expect = 0.35
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
 Frame = +2

Query: 59  SMPRRRGDLTFP-------GIYTCPSMGALQTWSSSADLQIYNLTKMGENNGRRHIFT 211
           S+  R GDL F        G+YTC +MG     + S +L++YN T  G ++     +T
Sbjct: 317 SVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNTAYT 374



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>AMGO1_RAT (Q80ZD7) Amphoterin-induced protein 1 precursor (Alivin-2)|
          Length = 493

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 95  GIYTCPSMGALQTWSSSADLQIYNLTKMGENNGRRHIFT 211
           G+YTC +MG     + S +L++YN T  G ++     +T
Sbjct: 337 GVYTCYAMGETFNETLSVELKVYNFTLHGHHDTLNTAYT 375



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>ADPGK_MOUSE (Q8VDL4) ADP-dependent glucokinase (EC 2.7.1.147) (ADPGK) (ADP-GK)|
          Length = 496

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 66  QEEEETSLFPEYTLAHQWGPYK 131
           QEE+E  L  EY    +WGP+K
Sbjct: 201 QEEDEFHLILEYLAGEEWGPFK 222



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>TTBK2_HUMAN (Q6IQ55) Tau-tubulin kinase 2 (EC 2.7.11.1)|
          Length = 1244

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +1

Query: 61   HAKKKRRPHFSRNIHLPINGGPTNLEFICRSADLQPDENG*K*WQKTHFYSAT 219
            H ++   PH  R+   P + G ++    C+    +P +NG K     H +SA+
Sbjct: 1176 HDQRSSSPHLGRSKSPPSHSGSSSSRRSCQQEHCKPSKNGLKGSGSLHHHSAS 1228



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>PSL2_MOUSE (Q9JJF9) Signal peptide peptidase-like 2A (EC 3.4.23.-) (SPP-like|
           2A protein) (SPPL2a protein) (Intramembrane protease 3)
           (IMP3) (Presenilin-like protein 2)
          Length = 523

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = -3

Query: 216 CTVKMCLLPLFSPIFVRL*--ICRSADELQV--CRAPIDGQVYIPGKVRSPLLLGMEVKY 49
           C + + LL ++   FV +   I ++ + + V     P +    +P  +R P L+G  V  
Sbjct: 344 CVILLGLLLIYDVFFVFITPFITKNGESIMVELAAGPFENAEKLPVVIRVPKLMGYSVMS 403

Query: 48  RCNVKLSFIHYSD 10
            C+V +S + + D
Sbjct: 404 VCSVPVSVLGFGD 416



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>AMGO1_HUMAN (Q86WK6) Amphoterin-induced protein 1 precursor (Alivin-2)|
          Length = 493

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +2

Query: 95  GIYTCPSMGALQTWSSSADLQIYNLTKMGENNGRRHIFT 211
           G+YTC +MG     + S +L+++N T  G ++     +T
Sbjct: 337 GVYTCYAMGETFNETLSVELKVHNFTLHGHHDTLNTAYT 375



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>GBLP_MEDSA (O24076) Guanine nucleotide-binding protein beta subunit-like|
           protein
          Length = 325

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +3

Query: 366 HSGWPSA*RSSPSTPQP 416
           HS W S  R SPSTPQP
Sbjct: 148 HSDWVSCVRFSPSTPQP 164



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>HEM6_PHOLL (Q7N6Z9) Coproporphyrinogen 3 oxidase, aerobic (EC 1.3.3.3)|
           (Coproporphyrinogen III oxidase, aerobic)
           (Coproporphyrinogenase) (Coprogen oxidase)
          Length = 302

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 307 SVFWDAGQATGLVLGAESTAILVGLPPEEARHRHHNH 417
           ++ WD G   GL  G  + +IL+ +PP  AR  H  H
Sbjct: 246 NLVWDRGTLFGLQSGGRTESILMSMPP-LARWEHDYH 281


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,866,621
Number of Sequences: 219361
Number of extensions: 1659373
Number of successful extensions: 4272
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4270
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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