ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38g05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK065015.1| Oryza sativa (japonica cultivar-group) cDNA clon... 84 5e-13
2ref|XM_480136.1| Oryza sativa (japonica cultivar-group), mRNA 82 2e-12
3emb|AJ437338.1|OSA437338 Oryza sativa partial mRNA for putative ... 82 2e-12
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
5dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
6gb|AY112141.1| Zea mays CL24213_1 mRNA sequence 74 4e-10
7gb|AC183275.3| Pan troglodytes BAC clone CH251-16D10 from chromo... 44 0.40
8emb|CR392347.5| Zebrafish DNA sequence from clone DKEY-37G12 in ... 44 0.40
9emb|AL807815.3| Mouse DNA sequence from clone RP23-207H16 on chr... 44 0.40
10emb|BX324223.23| Zebrafish DNA sequence from clone CH211-217F24 ... 42 1.6
11dbj|AK111445.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.6
12gb|AF047660.2| Caenorhabditis elegans cosmid T09A12, complete se... 40 6.2
13gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 6.2
14gb|AC150912.3| Pan troglodytes BAC clone CH251-18B3 from chromos... 40 6.2
15gb|AC147342.3| Pan troglodytes BAC clone CH251-13D13 from Y, com... 40 6.2
16gb|AC147671.3| Pan troglodytes BAC clone CH251-52L13 from Y, com... 40 6.2
17gb|AC147667.3| Pan troglodytes BAC clone CH251-114F17 from Y, co... 40 6.2
18gb|AC147686.2| Pan troglodytes BAC clone CH251-285E7 from Y, com... 40 6.2
19gb|AC147661.2| Pan troglodytes BAC clone CH251-336D20 from Y, co... 40 6.2
20gb|AC147130.3| Pan troglodytes BAC clone CH251-390G11 from Y, co... 40 6.2
21gb|AC146186.3| Pan troglodytes BAC clone CH251-517F3 from Y, com... 40 6.2
22gb|AC147682.3| Pan troglodytes BAC clone CH251-563H18 from Y, co... 40 6.2
23gb|AC149097.1| Pan troglodytes BAC clone CH251-8I14 from Y, comp... 40 6.2
24ref|NG_004832.1| Homo sapiens chromosome Y inverted repeat IR2, ... 40 6.2
25gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 6.2
26gb|AC161169.10| Mus musculus chromosome 5, clone RP24-102B13, co... 40 6.2
27gb|AC148932.3| Pan troglodytes BAC clone CH251-571G8 from chromo... 40 6.2
28gb|AC146223.3| Pan troglodytes BAC clone CH251-259P23 from Y, co... 40 6.2
29gb|AC146190.3| Pan troglodytes BAC clone CH251-509K23 from Y, co... 40 6.2
30gb|AC146168.3| Pan troglodytes BAC clone CH251-565F21 from Y, co... 40 6.2
31gb|AC146268.2| Pan troglodytes BAC clone CH251-57I2 from Y, comp... 40 6.2
32gb|AC146578.2| Pan troglodytes BAC clone CH251-86G3 from Y, comp... 40 6.2
33gb|AC159017.2| Pan troglodytes BAC clone CH251-571G18 from chrom... 40 6.2
34gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.2
35emb|X77867.1|YEHEMSTUV Y.enterocolitica hemS, hemT, hemU and hem... 40 6.2
36emb|BX247953.2| Mouse DNA sequence from clone RP23-289L21 on chr... 40 6.2
37emb|CR759968.6| Zebrafish DNA sequence from clone CH211-198N5 in... 40 6.2
38emb|AL138643.1|ATF7M19 Arabidopsis thaliana DNA chromosome 3, BA... 40 6.2
39dbj|BS000662.3| Pan troglodytes chromosome Y clone: PTB-143L19, ... 40 6.2
40dbj|BS000661.3| Pan troglodytes chromosome Y clone: PTB-101K22, ... 40 6.2
41dbj|BS000597.1| Pan troglodytes chromosome Y clone:PTB-206N19, c... 40 6.2
42dbj|BS000547.1| Pan troglodytes chromosome Y clone:PTB-232N08, c... 40 6.2
43dbj|BS000672.1| Pan troglodytes chromosome Y clone:PTB-410J23, c... 40 6.2
44gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 6.2
45gb|AC148835.3| Pan troglodytes BAC clone CH251-25M11 from chromo... 40 6.2
46emb|BX572079.7| Zebrafish DNA sequence from clone DKEY-35L8 in l... 40 6.2
47gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 6.2
48gb|AC147674.5| Pan troglodytes BAC clone CH251-28I8 from chromos... 40 6.2
49gb|AC010141.2|AC010141 Homo sapiens BAC clone RP11-220O2 from Y,... 40 6.2
50gb|AC068339.6| Homo sapiens chromosome 11, clone RP11-328E22, co... 40 6.2
51gb|AC150279.2| Pan troglodytes BAC clone CH251-100M4 from chromo... 40 6.2
52gb|AC148938.2| Pan troglodytes BAC clone CH251-272M11 from chrom... 40 6.2
53gb|AC156943.1| Pan troglodytes BAC clone CH251-607J5 from chromo... 40 6.2
54gb|AC006158.6|AC006158 Homo sapiens BAC clone RP11-441G8 from Y,... 40 6.2
55gb|AC007322.4|AC007322 Homo sapiens BAC clone RP11-553C13 from Y... 40 6.2
56ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 40 6.2
57gb|AC146011.4| Pan troglodytes BAC clone RP43-42M15 from chromos... 40 6.2
58gb|BC090532.1| Danio rerio cDNA clone IMAGE:7143041 40 6.2
59gb|AE001439.1| Helicobacter pylori J99, complete genome 40 6.2
60dbj|AP003034.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.2
61emb|AL953890.7| Mouse DNA sequence from clone RP23-321B3 on chro... 40 6.2
62emb|AL713989.20| Mouse DNA sequence from clone RP23-5I4 on chrom... 40 6.2 
>dbj|AK065015.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001F10, full
            insert sequence
          Length = 1818

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 90/106 (84%)
 Strand = Plus / Minus

                                                                        
Query: 319  gatgccggccaagcaaccggccttgtactgggagcagagagcactgccattctggttggc 378
            |||||||||||||||| | ||||||| |||||||||| |||||||||||||||| |||||
Sbjct: 1548 gatgccggccaagcaatctgccttgtgctgggagcagtgagcactgccattctgtttggc 1489

                                                          
Query: 379  cttccgcctgaagaagctcgccatcgacaccacaaccactgtgggt 424
            | ||| |  ||| |||||| || || ||||| || ||| |||||||
Sbjct: 1488 cctccccaagaataagctctccgtcaacaccgcacccattgtgggt 1443
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>ref|XM_480136.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1818

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                        
Query: 319  gatgccggccaagcaaccggccttgtactgggagcagagagcactgccattctggttggc 378
            |||||||||||||||| | ||||||| |||||||||| |||||||||||||||| |||||
Sbjct: 1548 gatgccggccaagcaatctgccttgtgctgggagcagtgagcactgccattctgtttggc 1489

             
Query: 379  c 379
            |
Sbjct: 1488 c 1488
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>emb|AJ437338.1|OSA437338 Oryza sativa partial mRNA for putative sphingosine kinase (sphk
           gene)
          Length = 580

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                       
Query: 319 gatgccggccaagcaaccggccttgtactgggagcagagagcactgccattctggttggc 378
           |||||||||||||||| | ||||||| |||||||||| |||||||||||||||| |||||
Sbjct: 337 gatgccggccaagcaatctgccttgtgctgggagcagtgagcactgccattctgtttggc 278

            
Query: 379 c 379
           |
Sbjct: 277 c 277
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                           
Query: 319     gatgccggccaagcaaccggccttgtactgggagcagagagcactgccattctggttggc 378
               |||||||||||||||| | ||||||| |||||||||| |||||||||||||||| |||||
Sbjct: 3015372 gatgccggccaagcaatctgccttgtgctgggagcagtgagcactgccattctgtttggc 3015313

                
Query: 379     c 379
               |
Sbjct: 3015312 c 3015312
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>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1349_D05
          Length = 174478

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 56/61 (91%)
 Strand = Plus / Minus

                                                                         
Query: 319   gatgccggccaagcaaccggccttgtactgggagcagagagcactgccattctggttggc 378
             |||||||||||||||| | ||||||| |||||||||| |||||||||||||||| |||||
Sbjct: 66095 gatgccggccaagcaatctgccttgtgctgggagcagtgagcactgccattctgtttggc 66036

              
Query: 379   c 379
             |
Sbjct: 66035 c 66035
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>gb|AY112141.1| Zea mays CL24213_1 mRNA sequence
          Length = 555

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 49/53 (92%)
 Strand = Plus / Plus

                                                                
Query: 389 aagaagctcgccatcgacaccacaaccactgtgggtactgccgactggcctaa 441
           ||||||||| || ||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 368 aagaagctcaccgtcgacgccacaaccactgtgggtactgccaactggcctaa 420



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Plus

                                                         
Query: 325 ggccaagcaaccggccttgtactgggagcagagagcactgccattc 370
           ||||||||| || ||||||| |||| ||||| ||||||||||||||
Sbjct: 304 ggccaagcagcctgccttgtgctggaagcagcgagcactgccattc 349
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>gb|AC183275.3| Pan troglodytes BAC clone CH251-16D10 from chromosome 2, complete
              sequence
          Length = 180877

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 339    ccttgtactgggagcagagagcactg 364
              |||||||||| |||||||||||||||
Sbjct: 109704 ccttgtactgtgagcagagagcactg 109679
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>emb|CR392347.5| Zebrafish DNA sequence from clone DKEY-37G12 in linkage group 1,
             complete sequence
          Length = 172461

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 183   aaaataatggcagaagacacatttttacag 212
             |||||||||| |||| ||||||||||||||
Sbjct: 97795 aaaataatggaagaaaacacatttttacag 97824
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>emb|AL807815.3| Mouse DNA sequence from clone RP23-207H16 on chromosome 4, complete
              sequence
          Length = 206914

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 190    tggcagaagacacatttttaca 211
              ||||||||||||||||||||||
Sbjct: 139186 tggcagaagacacatttttaca 139165
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>emb|BX324223.23| Zebrafish DNA sequence from clone CH211-217F24 in linkage group 21,
             complete sequence
          Length = 223297

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 202   catttttacagtgcaacaata 222
             |||||||||||||||||||||
Sbjct: 12955 catttttacagtgcaacaata 12975
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>dbj|AK111445.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-B01, full
           insert sequence
          Length = 1433

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 385 cctgaagaagctcgccatcgacacc 409
           |||||| ||||||||||||||||||
Sbjct: 367 cctgaacaagctcgccatcgacacc 391
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>gb|AF047660.2| Caenorhabditis elegans cosmid T09A12, complete sequence
          Length = 32727

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     cgatcagaataatgaataaa 27
             ||||||||||||||||||||
Sbjct: 22771 cgatcagaataatgaataaa 22790
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 386     ctgaagaagctcgccatcgacacc 409
               |||||||||||||||| |||||||
Sbjct: 5019964 ctgaagaagctcgccaccgacacc 5019941
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>gb|AC150912.3| Pan troglodytes BAC clone CH251-18B3 from chromosome 7, complete
             sequence
          Length = 170021

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 342   tgtactgggagcagagagca 361
             ||||||||||||||||||||
Sbjct: 73118 tgtactgggagcagagagca 73137
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>gb|AC147342.3| Pan troglodytes BAC clone CH251-13D13 from Y, complete sequence
          Length = 146106

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    ccatgccaagaagaagagga 79
             ||||||||||||||||||||
Sbjct: 28156 ccatgccaagaagaagagga 28175
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>gb|AC147671.3| Pan troglodytes BAC clone CH251-52L13 from Y, complete sequence
          Length = 159177

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     ccatgccaagaagaagagga 79
              ||||||||||||||||||||
Sbjct: 148688 ccatgccaagaagaagagga 148707
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>gb|AC147667.3| Pan troglodytes BAC clone CH251-114F17 from Y, complete sequence
          Length = 182271

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    ccatgccaagaagaagagga 79
             ||||||||||||||||||||
Sbjct: 30060 ccatgccaagaagaagagga 30041
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>gb|AC147686.2| Pan troglodytes BAC clone CH251-285E7 from Y, complete sequence
          Length = 176158

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    ccatgccaagaagaagagga 79
             ||||||||||||||||||||
Sbjct: 26715 ccatgccaagaagaagagga 26734
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>gb|AC147661.2| Pan troglodytes BAC clone CH251-336D20 from Y, complete sequence
          Length = 160602

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    ccatgccaagaagaagagga 79
             ||||||||||||||||||||
Sbjct: 67353 ccatgccaagaagaagagga 67334
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>gb|AC147130.3| Pan troglodytes BAC clone CH251-390G11 from Y, complete sequence
          Length = 180797

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    ccatgccaagaagaagagga 79
             ||||||||||||||||||||
Sbjct: 81591 ccatgccaagaagaagagga 81610
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>gb|AC146186.3| Pan troglodytes BAC clone CH251-517F3 from Y, complete sequence
          Length = 187140

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     ccatgccaagaagaagagga 79
              ||||||||||||||||||||
Sbjct: 116248 ccatgccaagaagaagagga 116229
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>gb|AC147682.3| Pan troglodytes BAC clone CH251-563H18 from Y, complete sequence
          Length = 196240

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    ccatgccaagaagaagagga 79
             ||||||||||||||||||||
Sbjct: 40712 ccatgccaagaagaagagga 40731
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>gb|AC149097.1| Pan troglodytes BAC clone CH251-8I14 from Y, complete sequence
          Length = 177481

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    ccatgccaagaagaagagga 79
             ||||||||||||||||||||
Sbjct: 41810 ccatgccaagaagaagagga 41791
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>ref|NG_004832.1| Homo sapiens chromosome Y inverted repeat IR2, centromeric (IR2@) on
              chromosome Y
          Length = 389013

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     ccatgccaagaagaagagga 79
              ||||||||||||||||||||
Sbjct: 245725 ccatgccaagaagaagagga 245744
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>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 170     acgaaaatgggtgaaaataa 189
               ||||||||||||||||||||
Sbjct: 3528225 acgaaaatgggtgaaaataa 3528244
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>gb|AC161169.10| Mus musculus chromosome 5, clone RP24-102B13, complete sequence
          Length = 239061

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 346  ctgggagcagagagcactgc 365
            ||||||||||||||||||||
Sbjct: 2714 ctgggagcagagagcactgc 2733
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>gb|AC148932.3| Pan troglodytes BAC clone CH251-571G8 from chromosome 7, complete
              sequence
          Length = 232604

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 342    tgtactgggagcagagagca 361
              ||||||||||||||||||||
Sbjct: 214270 tgtactgggagcagagagca 214289
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>gb|AC146223.3| Pan troglodytes BAC clone CH251-259P23 from Y, complete sequence
          Length = 150595

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 60   ccatgccaagaagaagagga 79
            ||||||||||||||||||||
Sbjct: 3180 ccatgccaagaagaagagga 3161
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>gb|AC146190.3| Pan troglodytes BAC clone CH251-509K23 from Y, complete sequence
          Length = 213746

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     ccatgccaagaagaagagga 79
              ||||||||||||||||||||
Sbjct: 210566 ccatgccaagaagaagagga 210585
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>gb|AC146168.3| Pan troglodytes BAC clone CH251-565F21 from Y, complete sequence
          Length = 183527

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    ccatgccaagaagaagagga 79
             ||||||||||||||||||||
Sbjct: 14403 ccatgccaagaagaagagga 14384
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>gb|AC146268.2| Pan troglodytes BAC clone CH251-57I2 from Y, complete sequence
          Length = 195737

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    ccatgccaagaagaagagga 79
             ||||||||||||||||||||
Sbjct: 18225 ccatgccaagaagaagagga 18206
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>gb|AC146578.2| Pan troglodytes BAC clone CH251-86G3 from Y, complete sequence
          Length = 188850

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     ccatgccaagaagaagagga 79
              ||||||||||||||||||||
Sbjct: 166090 ccatgccaagaagaagagga 166109
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>gb|AC159017.2| Pan troglodytes BAC clone CH251-571G18 from chromosome y, complete
             sequence
          Length = 196802

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    ccatgccaagaagaagagga 79
             ||||||||||||||||||||
Sbjct: 71881 ccatgccaagaagaagagga 71900
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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 384     gcctgaagaagctcgccatcgaca 407
               ||||||||||||||| ||||||||
Sbjct: 3364747 gcctgaagaagctcggcatcgaca 3364770
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>emb|X77867.1|YEHEMSTUV Y.enterocolitica hemS, hemT, hemU and hemV genes
          Length = 3901

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 178  gggtgaaaataatggcagaa 197
            ||||||||||||||||||||
Sbjct: 2419 gggtgaaaataatggcagaa 2400
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>emb|BX247953.2| Mouse DNA sequence from clone RP23-289L21 on chromosome 4 Contains a
             novel gene, a novel pseudogene, the Rrm2-ps1 gene for
             ribonucleotide reductase M2 pseudogene 1 and a
             heterogeneous nuclear ribonucleoprotein D (Hnrpd)
             pseudogene, complete sequence
          Length = 159473

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 10    atcagaataatgaataaaactaag 33
             |||||||||||| |||||||||||
Sbjct: 74665 atcagaataatgcataaaactaag 74688
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>emb|CR759968.6| Zebrafish DNA sequence from clone CH211-198N5 in linkage group 8,
             complete sequence
          Length = 182233

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 71    agaagaggagacctcacttt 90
             ||||||||||||||||||||
Sbjct: 77156 agaagaggagacctcacttt 77175
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>emb|AL138643.1|ATF7M19 Arabidopsis thaliana DNA chromosome 3, BAC clone F7M19
          Length = 99291

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   gacgaaaatgggtgaaaata 188
             ||||||||||||||||||||
Sbjct: 18686 gacgaaaatgggtgaaaata 18705
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>dbj|BS000662.3| Pan troglodytes chromosome Y clone: PTB-143L19, complete sequence
          Length = 193499

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     ccatgccaagaagaagagga 79
              ||||||||||||||||||||
Sbjct: 133090 ccatgccaagaagaagagga 133109
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>dbj|BS000661.3| Pan troglodytes chromosome Y clone: PTB-101K22, complete sequence
          Length = 185790

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     ccatgccaagaagaagagga 79
              ||||||||||||||||||||
Sbjct: 114878 ccatgccaagaagaagagga 114897
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>dbj|BS000597.1| Pan troglodytes chromosome Y clone:PTB-206N19, complete sequences
          Length = 205779

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     ccatgccaagaagaagagga 79
              ||||||||||||||||||||
Sbjct: 176112 ccatgccaagaagaagagga 176131
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>dbj|BS000547.1| Pan troglodytes chromosome Y clone:PTB-232N08, complete sequences
          Length = 219991

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     ccatgccaagaagaagagga 79
              ||||||||||||||||||||
Sbjct: 181383 ccatgccaagaagaagagga 181402
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>dbj|BS000672.1| Pan troglodytes chromosome Y clone:PTB-410J23, complete sequence
          Length = 179523

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    ccatgccaagaagaagagga 79
             ||||||||||||||||||||
Sbjct: 50052 ccatgccaagaagaagagga 50071
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 60       ccatgccaagaagaagagga 79
                ||||||||||||||||||||
Sbjct: 14385800 ccatgccaagaagaagagga 14385781



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 60       ccatgccaagaagaagagga 79
                ||||||||||||||||||||
Sbjct: 14121815 ccatgccaagaagaagagga 14121834



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 60       ccatgccaagaagaagagga 79
                ||||||||||||||||||||
Sbjct: 13552868 ccatgccaagaagaagagga 13552849



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 60       ccatgccaagaagaagagga 79
                ||||||||||||||||||||
Sbjct: 13297608 ccatgccaagaagaagagga 13297627



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 60      ccatgccaagaagaagagga 79
               ||||||||||||||||||||
Sbjct: 9898334 ccatgccaagaagaagagga 9898315



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 60      ccatgccaagaagaagagga 79
               ||||||||||||||||||||
Sbjct: 9632432 ccatgccaagaagaagagga 9632451



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 60      ccatgccaagaagaagagga 79
               ||||||||||||||||||||
Sbjct: 9163389 ccatgccaagaagaagagga 9163370



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 60      ccatgccaagaagaagagga 79
               ||||||||||||||||||||
Sbjct: 8900773 ccatgccaagaagaagagga 8900792



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 60      ccatgccaagaagaagagga 79
               ||||||||||||||||||||
Sbjct: 8429804 ccatgccaagaagaagagga 8429785



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 60      ccatgccaagaagaagagga 79
               ||||||||||||||||||||
Sbjct: 8163879 ccatgccaagaagaagagga 8163898



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 60      ccatgccaagaagaagagga 79
               ||||||||||||||||||||
Sbjct: 4602195 ccatgccaagaagaagagga 4602176



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 60      ccatgccaagaagaagagga 79
               ||||||||||||||||||||
Sbjct: 4376531 ccatgccaagaagaagagga 4376550



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     ccatgccaagaagaagagga 79
              ||||||||||||||||||||
Sbjct: 946489 ccatgccaagaagaagagga 946470
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>gb|AC148835.3| Pan troglodytes BAC clone CH251-25M11 from chromosome 7, complete
             sequence
          Length = 154596

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 342   tgtactgggagcagagagca 361
             ||||||||||||||||||||
Sbjct: 73784 tgtactgggagcagagagca 73803
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>emb|BX572079.7| Zebrafish DNA sequence from clone DKEY-35L8 in linkage group 15,
             complete sequence
          Length = 192849

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 225   ttgctaaccacttaatttag 244
             ||||||||||||||||||||
Sbjct: 19301 ttgctaaccacttaatttag 19320
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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 384     gcctgaagaagctcgccatcgaca 407
               ||||||||||||||| ||||||||
Sbjct: 2790225 gcctgaagaagctcggcatcgaca 2790202
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>gb|AC147674.5| Pan troglodytes BAC clone CH251-28I8 from chromosome y, complete sequence
          Length = 193266

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 60     ccatgccaagaagaagagga 79
              ||||||||||||||||||||
Sbjct: 123373 ccatgccaagaagaagagga 123354
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>gb|AC010141.2|AC010141 Homo sapiens BAC clone RP11-220O2 from Y, complete sequence
          Length = 121258

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    ccatgccaagaagaagagga 79
             ||||||||||||||||||||
Sbjct: 98502 ccatgccaagaagaagagga 98521
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>gb|AC068339.6| Homo sapiens chromosome 11, clone RP11-328E22, complete sequence
          Length = 155491

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   agtcacaaacctacttctgt 311
             ||||||||||||||||||||
Sbjct: 38815 agtcacaaacctacttctgt 38796
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>gb|AC150279.2| Pan troglodytes BAC clone CH251-100M4 from chromosome y, complete
             sequence
          Length = 171329

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    ccatgccaagaagaagagga 79
             ||||||||||||||||||||
Sbjct: 10469 ccatgccaagaagaagagga 10450
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>gb|AC148938.2| Pan troglodytes BAC clone CH251-272M11 from chromosome y, complete
             sequence
          Length = 191054

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    ccatgccaagaagaagagga 79
             ||||||||||||||||||||
Sbjct: 14407 ccatgccaagaagaagagga 14388
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>gb|AC156943.1| Pan troglodytes BAC clone CH251-607J5 from chromosome y, complete
              sequence
          Length = 193730

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 60     ccatgccaagaagaagagga 79
              ||||||||||||||||||||
Sbjct: 155825 ccatgccaagaagaagagga 155844
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>gb|AC006158.6|AC006158 Homo sapiens BAC clone RP11-441G8 from Y, complete sequence
          Length = 110359

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    ccatgccaagaagaagagga 79
             ||||||||||||||||||||
Sbjct: 11185 ccatgccaagaagaagagga 11166
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>gb|AC007322.4|AC007322 Homo sapiens BAC clone RP11-553C13 from Y, complete sequence
          Length = 184215

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    ccatgccaagaagaagagga 79
             ||||||||||||||||||||
Sbjct: 24936 ccatgccaagaagaagagga 24917
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>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat
             IR2 (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    ccatgccaagaagaagagga 79
             ||||||||||||||||||||
Sbjct: 62131 ccatgccaagaagaagagga 62112
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>gb|AC146011.4| Pan troglodytes BAC clone RP43-42M15 from chromosome y, complete
             sequence
          Length = 204487

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    ccatgccaagaagaagagga 79
             ||||||||||||||||||||
Sbjct: 48356 ccatgccaagaagaagagga 48375
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>gb|BC090532.1| Danio rerio cDNA clone IMAGE:7143041
          Length = 1295

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 71   agaagaggagacctcacttt 90
            ||||||||||||||||||||
Sbjct: 1059 agaagaggagacctcacttt 1040
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>gb|AE001439.1| Helicobacter pylori J99, complete genome
          Length = 1643831

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     taaaactaagcttaacatta 43
              ||||||||||||||||||||
Sbjct: 963021 taaaactaagcttaacatta 963002



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     taaaactaagcttaacatta 43
              ||||||||||||||||||||
Sbjct: 726767 taaaactaagcttaacatta 726748
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>dbj|AP003034.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-347E24,
           complete sequence
          Length = 158780

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 292 agtcacaaacctacttctgt 311
           ||||||||||||||||||||
Sbjct: 299 agtcacaaacctacttctgt 318
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>emb|AL953890.7| Mouse DNA sequence from clone RP23-321B3 on chromosome 2, complete
             sequence
          Length = 157722

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 204   tttttacagtgcaacaatac 223
             ||||||||||||||||||||
Sbjct: 50039 tttttacagtgcaacaatac 50020
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>emb|AL713989.20| Mouse DNA sequence from clone RP23-5I4 on chromosome 5, complete sequence
          Length = 215210

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 346    ctgggagcagagagcactgc 365
              ||||||||||||||||||||
Sbjct: 107716 ctgggagcagagagcactgc 107735


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,625,219
Number of Sequences: 3902068
Number of extensions: 4625219
Number of successful extensions: 104826
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104494
Number of HSP's gapped (non-prelim): 332
length of query: 458
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 436
effective length of database: 17,147,199,772
effective search space: 7476179100592
effective search space used: 7476179100592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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