Clone Name | rbastl38g02 |
---|---|
Clone Library Name | barley_pub |
>gb|M90663.1|WHTE1A Wheat ubiquitin activating enzyme (E1) mRNA, complete cds Length = 3695 Score = 543 bits (274), Expect = e-151 Identities = 393/431 (91%), Gaps = 10/431 (2%) Strand = Plus / Minus Query: 41 ttttagttgtaaacgcatcatgcaaca--------gatgatgttgtgcgt-gtcttgtga 91 |||||||||| |||||||||||||||| ||||||||||||| | |||| |||| Sbjct: 3687 ttttagttgtgaacgcatcatgcaacaattatcaagatgatgttgtgcctagtctcgtga 3628 Query: 92 atcgtgatgtctggtaacaactccagatcagcccccaatgatccaatcgacatcgagatg 151 || || ||||||||||||||| | |||||||||||||||||||| ||||||||| ||||| Sbjct: 3627 atagttatgtctggtaacaacccgagatcagcccccaatgatccgatcgacatcaagatg 3568 Query: 152 gtagaaaggaaaa-tcagtcagtaatgtggcttaagcccccactcagcttacagtcacta 210 ||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||||| Sbjct: 3567 gtagaaaggaaaaatcagtcgataatgtggcttaagcccccactcagcttacaatcacta 3508 Query: 211 atgcaactcatgacttgtcagtcgatcaggcatgaccaaccacaagatcatgtgaacaca 270 |||| ||||||||| |||||||||||| |||||||||||||||||||||||| ||| || Sbjct: 3507 atgcgactcatgacatgtcagtcgatccagcatgaccaaccacaagatcatgtaaacgca 3448 Query: 271 gatgaagcgcttcttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtca 330 || | |||||||||||||||||||||||| |||||||| |||||||||||||||||||| Sbjct: 3447 gaaggagcgcttcttcagcggaagtagaccgacacaagtgggatgtcgacatcgttgtcg 3388 Query: 331 tcgtcatcctcacaggccaccacgacgtcgagatgacgccggtaagagggcacctccatc 390 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 3387 tcgtcatcctcacaggccaccacaacgtcgagatgacgccggtaagagggcacctccatc 3328 Query: 391 ttggccacctccctggcaacatcaactacctttctgtcaagccgttccttgtgcctgggg 450 || ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct: 3327 ttagccacctccctggcaacatcaacaaccttcctgtcaagccgttccttgtgcctgggg 3268 Query: 451 aacatagagtt 461 ||||| ||||| Sbjct: 3267 aacatggagtt 3257
>gb|M55604.1|WHTUBA1 T.aestivum ubiquitin activating enzyme E1 (UBA1) gene, complete cds Length = 3586 Score = 353 bits (178), Expect = 3e-94 Identities = 220/234 (94%) Strand = Plus / Minus Query: 228 tcagtcgatcaggcatgaccaaccacaagatcatgtgaacacagatgaagcgcttcttca 287 ||||| ||||| |||||||||||||||||||||| | ||| |||| | |||||||||||| Sbjct: 3395 tcagtagatcaagcatgaccaaccacaagatcatttaaacgcagaaggagcgcttcttca 3336 Query: 288 gcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggc 347 |||||||||||| |||||||| |||||||||||||| ||||| |||||||||||||| || Sbjct: 3335 gcggaagtagaccgacacaagtgggatgtcgacatcattgtcgtcgtcatcctcacacgc 3276 Query: 348 caccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctccctggc 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3275 caccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctccctggc 3216 Query: 408 aacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagtt 461 ||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct: 3215 aacatcaactaccttcctgtcaagccgttccttgtgcctggggaacatggagtt 3162 Score = 174 bits (88), Expect = 2e-40 Identities = 150/169 (88%), Gaps = 10/169 (5%) Strand = Plus / Minus Query: 38 caattttagttgtaaacgcatcatgcaaca--------gatgatgttgtgcgt-gtcttg 88 ||||||||| |||||||||||||||||||| ||||||||||||| | |||| | Sbjct: 3571 caattttagctgtaaacgcatcatgcaacaattatcaagatgatgttgtgcctagtctcg 3512 Query: 89 tgaatcgtgatgtctggtaacaactccagatcagcccccaatgatccaatcgacatcga- 147 |||||| ||||||||||||||||| | |||||||||||||||||||| ||||||||| | Sbjct: 3511 tgaatcatgatgtctggtaacaacccgagatcagcccccaatgatccgatcgacatcaaa 3452 Query: 148 gatggtagaaaggaaaatcagtcagtaatgtggcttaagcccccactca 196 ||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 3451 gatggtagaaaggaaaatcagtcggtaatgtggcttaagcccccactca 3403
>gb|BT019213.1| Zea mays clone Contig886.F mRNA sequence Length = 836 Score = 176 bits (89), Expect = 4e-41 Identities = 152/173 (87%) Strand = Plus / Minus Query: 289 cggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggcc 348 |||||||| | ||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct: 779 cggaagtaaatagacacaagcgggatgtcgacgtcattgtcatcgtcatcctcacaggcc 720 Query: 349 accacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctccctggca 408 ||||| ||||| ||||| || ||||| || |||||||||| |||||||||||||||||| Sbjct: 719 accacaacgtccagatggcggcggtaggaaggcacctccaccttggccacctccctggcc 660 Query: 409 acatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagtt 461 ||||| || ||||| |||| ||||| |||||||| || |||||||| ||||| Sbjct: 659 acatccaccaccttcttgtccagccgctccttgtgtctcgggaacatggagtt 607
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 125 bits (63), Expect = 1e-25 Identities = 150/179 (83%) Strand = Plus / Plus Query: 283 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 342 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 312150 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 312209 Query: 343 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 402 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 312210 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 312269 Query: 403 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagtt 461 || || ||||| || ||||| |||| || || ||||||||||| |||||||| ||||| Sbjct: 312270 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagtt 312328 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 169 tcagtaatgtggcttaagcccccactcagcttacag 204 ||||||||||||||||| |||||||| || |||||| Sbjct: 312039 tcagtaatgtggcttaaacccccacttagtttacag 312074
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 125 bits (63), Expect = 1e-25 Identities = 150/179 (83%) Strand = Plus / Plus Query: 283 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 342 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 295048 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 295107 Query: 343 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 402 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 295108 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 295167 Query: 403 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagtt 461 || || ||||| || ||||| |||| || || ||||||||||| |||||||| ||||| Sbjct: 295168 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagtt 295226 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 169 tcagtaatgtggcttaagcccccactcagcttacag 204 ||||||||||||||||| |||||||| || |||||| Sbjct: 294937 tcagtaatgtggcttaaacccccacttagtttacag 294972
>dbj|AK111781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083B12, full insert sequence Length = 3724 Score = 125 bits (63), Expect = 1e-25 Identities = 150/179 (83%) Strand = Plus / Minus Query: 283 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 342 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 3469 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 3410 Query: 343 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 402 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 3409 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 3350 Query: 403 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagtt 461 || || ||||| || ||||| |||| || || ||||||||||| |||||||| ||||| Sbjct: 3349 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagtt 3291 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Minus Query: 169 tcagtaatgtggcttaagcccccactcagcttacag 204 ||||||||||||||||| |||||||| || |||||| Sbjct: 3580 tcagtaatgtggcttaaacccccacttagtttacag 3545
>dbj|AK111741.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023049I12, full insert sequence Length = 1533 Score = 125 bits (63), Expect = 1e-25 Identities = 150/179 (83%) Strand = Plus / Minus Query: 283 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 342 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 1362 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 1303 Query: 343 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 402 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 1302 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 1243 Query: 403 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagtt 461 || || ||||| || ||||| |||| || || ||||||||||| |||||||| ||||| Sbjct: 1242 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagtt 1184 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Minus Query: 169 tcagtaatgtggcttaagcccccactcagcttacag 204 ||||||||||||||||| |||||||| || |||||| Sbjct: 1473 tcagtaatgtggcttaaacccccacttagtttacag 1438
>dbj|AK104898.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C03, full insert sequence Length = 1510 Score = 125 bits (63), Expect = 1e-25 Identities = 150/179 (83%) Strand = Plus / Minus Query: 283 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 342 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 1253 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 1194 Query: 343 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 402 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 1193 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 1134 Query: 403 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagtt 461 || || ||||| || ||||| |||| || || ||||||||||| |||||||| ||||| Sbjct: 1133 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagtt 1075 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Minus Query: 169 tcagtaatgtggcttaagcccccactcagcttacag 204 ||||||||||||||||| |||||||| || |||||| Sbjct: 1364 tcagtaatgtggcttaaacccccacttagtttacag 1329
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 125 bits (63), Expect = 1e-25 Identities = 150/179 (83%) Strand = Plus / Plus Query: 283 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 342 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 295048 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 295107 Query: 343 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 402 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 295108 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 295167 Query: 403 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagtt 461 || || ||||| || ||||| |||| || || ||||||||||| |||||||| ||||| Sbjct: 295168 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagtt 295226 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 169 tcagtaatgtggcttaagcccccactcagcttacag 204 ||||||||||||||||| |||||||| || |||||| Sbjct: 294937 tcagtaatgtggcttaaacccccacttagtttacag 294972
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 125 bits (63), Expect = 1e-25 Identities = 150/179 (83%) Strand = Plus / Plus Query: 283 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 342 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 312150 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 312209 Query: 343 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 402 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 312210 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 312269 Query: 403 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagtt 461 || || ||||| || ||||| |||| || || ||||||||||| |||||||| ||||| Sbjct: 312270 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagtt 312328 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 169 tcagtaatgtggcttaagcccccactcagcttacag 204 ||||||||||||||||| |||||||| || |||||| Sbjct: 312039 tcagtaatgtggcttaaacccccacttagtttacag 312074
>emb|BX000501.4|CNS08CDR Oryza sativa chromosome 11, . BAC OSJNBa0032J07 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 160673 Score = 125 bits (63), Expect = 1e-25 Identities = 150/179 (83%) Strand = Plus / Minus Query: 283 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 342 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 9945 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 9886 Query: 343 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 402 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 9885 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 9826 Query: 403 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagtt 461 || || ||||| || ||||| |||| || || ||||||||||| |||||||| ||||| Sbjct: 9825 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagtt 9767 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Minus Query: 169 tcagtaatgtggcttaagcccccactcagcttacag 204 ||||||||||||||||| |||||||| || |||||| Sbjct: 10056 tcagtaatgtggcttaaacccccacttagtttacag 10021
>emb|BX000494.2|CNS08CDK Oryza sativa chromosome 12, . BAC OSJNBa0052H10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152222 Score = 125 bits (63), Expect = 1e-25 Identities = 150/179 (83%) Strand = Plus / Plus Query: 283 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 342 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 45201 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 45260 Query: 343 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 402 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 45261 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 45320 Query: 403 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagtt 461 || || ||||| || ||||| |||| || || ||||||||||| |||||||| ||||| Sbjct: 45321 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagtt 45379 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 169 tcagtaatgtggcttaagcccccactcagcttacag 204 ||||||||||||||||| |||||||| || |||||| Sbjct: 45090 tcagtaatgtggcttaaacccccacttagtttacag 45125
>emb|BX000497.1|CNS08CDN Oryza sativa chromosome 11, . BAC OSJNBa0010K05 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 164143 Score = 125 bits (63), Expect = 1e-25 Identities = 150/179 (83%) Strand = Plus / Plus Query: 283 cttcagcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctca 342 ||||| |||||||||| || || || |||||||| || ||||||||||| || |||||| Sbjct: 2366 cttcaccggaagtagattgataccagtgggatgtcaacgtcgttgtcatcatcgtcctca 2425 Query: 343 caggccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctcc 402 || |||||||| ||||| ||||| |||||||| | ||||||||||| ||| ||||||||| Sbjct: 2426 caagccaccaccacgtcaagatggcgccggtatgggggcacctccacctttgccacctcc 2485 Query: 403 ctggcaacatcaactacctttctgtcaagccgttccttgtgcctggggaacatagagtt 461 || || ||||| || ||||| |||| || || ||||||||||| |||||||| ||||| Sbjct: 2486 ctcgccacatcgaccaccttcttgtctagacgctccttgtgcctcgggaacattgagtt 2544 Score = 48.1 bits (24), Expect = 0.025 Identities = 33/36 (91%) Strand = Plus / Plus Query: 169 tcagtaatgtggcttaagcccccactcagcttacag 204 ||||||||||||||||| |||||||| || |||||| Sbjct: 2255 tcagtaatgtggcttaaacccccacttagtttacag 2290
>gb|BT019260.1| Zea mays clone Contig933.F mRNA sequence Length = 771 Score = 60.0 bits (30), Expect = 7e-06 Identities = 63/74 (85%) Strand = Plus / Plus Query: 382 acctccatcttggccacctccctggcaacatcaactacctttctgtcaagccgttccttg 441 ||||||| |||||||||||||||||| |||||||| ||||| || | |||| |||||| Sbjct: 307 acctccaccttggccacctccctggcgacatcaaccaccttcctctgcagcctctccttg 366 Query: 442 tgcctggggaacat 455 ||||| | |||||| Sbjct: 367 tgcctcgcgaacat 380
>gb|BT018436.1| Zea mays clone EL01N0372B11.d mRNA sequence Length = 1726 Score = 60.0 bits (30), Expect = 7e-06 Identities = 63/74 (85%) Strand = Plus / Minus Query: 382 acctccatcttggccacctccctggcaacatcaactacctttctgtcaagccgttccttg 441 ||||||| |||||||||||||||||| |||||||| ||||| || | |||| |||||| Sbjct: 1463 acctccaccttggccacctccctggcgacatcaaccaccttcctctgcagcctctccttg 1404 Query: 442 tgcctggggaacat 455 ||||| | |||||| Sbjct: 1403 tgcctcgcgaacat 1390
>gb|M90664.1|WHTE1B Wheat ubiquitin activating enzyme (E1) mRNA, complete cds Length = 3588 Score = 58.0 bits (29), Expect = 3e-05 Identities = 98/121 (80%) Strand = Plus / Minus Query: 287 agcggaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacagg 346 |||||||||| || ||||| || ||||||||||| ||||| || || || ||||| |||| Sbjct: 3345 agcggaagtaaaccgacacgagggggatgtcgacgtcgttctcgtcctcgtcctcgcagg 3286 Query: 347 ccaccacgacgtcgagatgacgccggtaagagggcacctccatcttggccacctccctgg 406 |||| ||| ||| || || | |||||| ||| || |||| ||||||||||||||||| Sbjct: 3285 ccacgccgatgtccaggtgcctccggtactcggggacgtccaccttggccacctccctgg 3226 Query: 407 c 407 | Sbjct: 3225 c 3225
>ref|NM_128566.3| Arabidopsis thaliana ATUBA1; ubiquitin activating enzyme AT2G30110 (ATUBA1) mRNA, complete cds Length = 3626 Score = 46.1 bits (23), Expect = 0.10 Identities = 53/63 (84%) Strand = Plus / Minus Query: 291 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 350 |||||||| ||| || || || || ||||| || |||||||| ||||||||||| ||||| Sbjct: 3360 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3301 Query: 351 cac 353 ||| Sbjct: 3300 cac 3298
>gb|AC004165.3| Arabidopsis thaliana chromosome 2 clone T27E13 map m283, complete sequence Length = 83796 Score = 46.1 bits (23), Expect = 0.10 Identities = 53/63 (84%) Strand = Plus / Minus Query: 291 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 350 |||||||| ||| || || || || ||||| || |||||||| ||||||||||| ||||| Sbjct: 53002 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 52943 Query: 351 cac 353 ||| Sbjct: 52942 cac 52940
>gb|AY090248.1| Arabidopsis thaliana At2g30110/T27E13.15 mRNA, complete cds Length = 3561 Score = 46.1 bits (23), Expect = 0.10 Identities = 53/63 (84%) Strand = Plus / Minus Query: 291 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 350 |||||||| ||| || || || || ||||| || |||||||| ||||||||||| ||||| Sbjct: 3321 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3262 Query: 351 cac 353 ||| Sbjct: 3261 cac 3259
>dbj|AK220705.1| Arabidopsis thaliana mRNA for putative ubiquitin activating enzyme, complete cds, clone: RAFL22-01-B01 Length = 474 Score = 46.1 bits (23), Expect = 0.10 Identities = 53/63 (84%) Strand = Plus / Minus Query: 291 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 350 |||||||| ||| || || || || ||||| || |||||||| ||||||||||| ||||| Sbjct: 208 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 149 Query: 351 cac 353 ||| Sbjct: 148 cac 146
>gb|BT006363.1| Arabidopsis thaliana At2g30110/T27E13.15 gene, complete cds Length = 3243 Score = 46.1 bits (23), Expect = 0.10 Identities = 53/63 (84%) Strand = Plus / Minus Query: 291 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 350 |||||||| ||| || || || || ||||| || |||||||| ||||||||||| ||||| Sbjct: 3237 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3178 Query: 351 cac 353 ||| Sbjct: 3177 cac 3175
>gb|U80808.1|ATU80808 Arabidopsis thaliana ubiquitin activating enzyme (UBA1) gene, complete cds Length = 3346 Score = 46.1 bits (23), Expect = 0.10 Identities = 53/63 (84%) Strand = Plus / Minus Query: 291 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 350 |||||||| ||| || || || || ||||| || |||||||| ||||||||||| ||||| Sbjct: 3334 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 3275 Query: 351 cac 353 ||| Sbjct: 3274 cac 3272
>emb|BX821151.1|CNS0AAA1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL1ZD10 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 646 Score = 46.1 bits (23), Expect = 0.10 Identities = 53/63 (84%) Strand = Plus / Minus Query: 291 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 350 |||||||| ||| || || || || ||||| || |||||||| ||||||||||| ||||| Sbjct: 390 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 331 Query: 351 cac 353 ||| Sbjct: 330 cac 328
>emb|BX820519.1|CNS0A9M5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH43ZE11 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1375 Score = 46.1 bits (23), Expect = 0.10 Identities = 53/63 (84%) Strand = Plus / Minus Query: 291 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 350 |||||||| ||| || || || || ||||| || |||||||| ||||||||||| ||||| Sbjct: 1167 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 1108 Query: 351 cac 353 ||| Sbjct: 1107 cac 1105
>emb|BX820277.1|CNS0A9OY Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH16ZF09 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 930 Score = 46.1 bits (23), Expect = 0.10 Identities = 53/63 (84%) Strand = Plus / Minus Query: 291 gaagtagacagacacaagcgggatgtcgacatcgttgtcatcgtcatcctcacaggccac 350 |||||||| ||| || || || || ||||| || |||||||| ||||||||||| ||||| Sbjct: 673 gaagtagatagagacgagaggaatatcgacgtcattgtcatcttcatcctcacaagccac 614 Query: 351 cac 353 ||| Sbjct: 613 cac 611
>gb|BC076655.1| Xenopus tropicalis matrin 3, mRNA (cDNA clone MGC:79524 IMAGE:6977687), complete cds Length = 3174 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 382 acctccatcttggccacctccc 403 |||||||||||||||||||||| Sbjct: 1307 acctccatcttggccacctccc 1286
>gb|AC151307.2| Xenopus tropicalis clone CH216-61M14, complete sequence Length = 164963 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Plus Query: 382 acctccatcttggccacctccc 403 |||||||||||||||||||||| Sbjct: 87684 acctccatcttggccacctccc 87705
>ref|NM_001006791.1| Xenopus tropicalis matrin 3 (matr3), mRNA Length = 3174 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 382 acctccatcttggccacctccc 403 |||||||||||||||||||||| Sbjct: 1307 acctccatcttggccacctccc 1286
>emb|AJ299395.1|CAR299395 Cicer arietinum partial mRNA for ubiquitin activating enzyme E1 (ORF), clone CanUBC-1 Length = 807 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Minus Query: 325 ttgtcatcgtcatcctcacaggccac 350 ||||||||||||||||| |||||||| Sbjct: 484 ttgtcatcgtcatcctcgcaggccac 459
>emb|CR761638.2| Xenopus tropicalis finished cDNA, clone TGas107n11 Length = 1855 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 382 acctccatcttggccacctccc 403 |||||||||||||||||||||| Sbjct: 1179 acctccatcttggccacctccc 1158
>gb|AC115722.12| Mus musculus chromosome 5, clone RP23-16N23, complete sequence Length = 194380 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 acatcgttgtcatcgtcatc 338 |||||||||||||||||||| Sbjct: 158321 acatcgttgtcatcgtcatc 158340
>ref|XM_752686.1| Ustilago maydis 521 hypothetical protein (UM01632.1) partial mRNA Length = 1047 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 315 gtcgacatcgttgtcatcgtcatc 338 |||| ||||||||||||||||||| Sbjct: 585 gtcgtcatcgttgtcatcgtcatc 562
>ref|XM_753433.1| Ustilago maydis 521 hypothetical protein (UM02379.1) partial mRNA Length = 3270 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 tcacaggccaccacgacgtc 359 |||||||||||||||||||| Sbjct: 2191 tcacaggccaccacgacgtc 2210
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 cttgtgaatcgtgatgtctg 104 |||||||||||||||||||| Sbjct: 2258336 cttgtgaatcgtgatgtctg 2258355
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 cttgtgaatcgtgatgtctg 104 |||||||||||||||||||| Sbjct: 2109514 cttgtgaatcgtgatgtctg 2109533
>emb|AL591845.27| Human DNA sequence from clone RP11-268J15 on chromosome 1 Contains the 3' end of a novel gene for thyroid hormone receptor-associated protein, 150 kDa subunit (TRAP150) (FLJ22082), a novel transcript (FLJ22938), a gene for a novel protein (FLJ10647), the 3' end of a gene for Ser/Thr-like kinase (MGC4796) and two CpG islands, complete sequence Length = 104307 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 395 ccacctccctggcaacatca 414 |||||||||||||||||||| Sbjct: 67335 ccacctccctggcaacatca 67354
>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 Length = 2039961 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 tgaagcgcttcttcagcgga 292 |||||||||||||||||||| Sbjct: 1983686 tgaagcgcttcttcagcgga 1983705
>gb|AC008125.9| Homo sapiens 12 BAC RPCI11-25E2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 189286 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gagatggtagaaaggaaaat 165 |||||||||||||||||||| Sbjct: 153914 gagatggtagaaaggaaaat 153933
>gb|AF231794.1|AF231794 Pinus taeda clone LC15b2 microsatellite sequence Length = 254 Score = 40.1 bits (20), Expect = 6.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 315 gtcgacatcgttgtcatcgtcatcctca 342 |||| |||||| |||||||||||||||| Sbjct: 231 gtcgtcatcgtcgtcatcgtcatcctca 204
>emb|BX005055.5| Zebrafish DNA sequence from clone CH211-188N23 in linkage group 23, complete sequence Length = 156598 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 gaacaaacataaaacatgca 20 |||||||||||||||||||| Sbjct: 96241 gaacaaacataaaacatgca 96260
>emb|Z65094.1|HS19B9F H.sapiens CpG island DNA genomic Mse1 fragment, clone 19b9, forward read cpg19b9.ft1a Length = 264 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 gaaaggaaaatcagtcagta 174 |||||||||||||||||||| Sbjct: 169 gaaaggaaaatcagtcagta 188
>emb|CR847870.16| Zebrafish DNA sequence from clone DKEY-170G11 in linkage group 22, complete sequence Length = 237985 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 aacaaacataaaacatgcat 21 |||||||||||||||||||| Sbjct: 155174 aacaaacataaaacatgcat 155193
>emb|AM236324.1| Escherichia coli genome fragment containing the yersiniabactin, cob and pdu gene clusters, strain A0 34/86 Length = 84189 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 85 cttgtgaatcgtgatgtctg 104 |||||||||||||||||||| Sbjct: 54791 cttgtgaatcgtgatgtctg 54810
>dbj|AB073314.1| Ciona intestinalis CiGi1 gene for G protein alpha subunit Gi splicing variants CiGi1a and CiGi1b, partial cds Length = 2192 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 gaacaaacataaaacatgca 20 |||||||||||||||||||| Sbjct: 1591 gaacaaacataaaacatgca 1572 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,573,171 Number of Sequences: 3902068 Number of extensions: 3573171 Number of successful extensions: 71227 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 44 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71023 Number of HSP's gapped (non-prelim): 199 length of query: 461 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 439 effective length of database: 17,147,199,772 effective search space: 7527620699908 effective search space used: 7527620699908 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)