Clone Name | rbastl38f12 |
---|---|
Clone Library Name | barley_pub |
>HAX1_MOUSE (O35387) HS1-associating protein X-1 (HAX-1) (HS1-binding protein)| Length = 280 Score = 31.2 bits (69), Expect = 0.66 Identities = 18/36 (50%), Positives = 18/36 (50%) Frame = -2 Query: 132 GSSGPFDDLLDTWDVVFLSLLPHFGASEPLDYDSMV 25 GS GPF L DTW V PH A E D DS V Sbjct: 162 GSQGPFHRLDDTWPV-----SPHSRAKEDKDLDSQV 192
>SYP41_ARATH (O65359) Syntaxin-41 (AtSYP41) (AtTLG2a)| Length = 322 Score = 31.2 bits (69), Expect = 0.66 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 1/81 (1%) Frame = +2 Query: 101 SNRSSKGPLLPSLHTGTR*AHHQKLERASATSAQQKNMLLRTFSWRR-GSSCTGPLAVEV 277 S RS + PL S TGTR + ++TS N S G+S G + V + Sbjct: 16 SLRSVRAPLSSSSLTGTRSGGVGPVIEMASTSLLNPNRSYAPISTEDPGTSSKGAITVGL 75 Query: 278 WPPPWLDDVSDISSNFMNCAT 340 PP W+D +IS N T Sbjct: 76 -PPAWVDVSEEISVNIQRART 95
>CAND_DROME (P27398) Calpain D (EC 3.4.22.-) (Calcium-activated neutral| proteinase D) (CANP D) (Small optic lobes protein) Length = 1594 Score = 28.9 bits (63), Expect = 3.3 Identities = 11/30 (36%), Positives = 16/30 (53%) Frame = +3 Query: 54 RHQSVAASLGTQHPRCPTGHQRGHYYHHYI 143 R Q +A SLG + H H++HHY+ Sbjct: 176 RGQDLAGSLGNRGELLAADHSHPHHHHHYL 205
>NPBW2_BOVIN (Q8MJV2) Neuropeptides B/W receptor type 2 (G-protein coupled| receptor 8) Length = 336 Score = 28.1 bits (61), Expect = 5.6 Identities = 17/53 (32%), Positives = 24/53 (45%) Frame = -3 Query: 188 HLRVPTFGDALI*YQYVVMVVVAPLMTCWTPGMLCS*ACCHTLVPQNLWIMIV 30 H G A +V+ V+A + CWTP L S T +PQ ++IV Sbjct: 245 HSGAKALGKAKRKVSLLVLAVLAVGLLCWTPFHLASIVALTTDLPQTPLVIIV 297
>NPBW2_HUMAN (P48146) Neuropeptides B/W receptor type 2 (G-protein coupled| receptor 8) Length = 333 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -3 Query: 140 VVMVVVAPLMTCWTPGMLCS*ACCHTLVPQ 51 +V+VV+A + CWTP L S T +PQ Sbjct: 261 LVLVVLAVCLLCWTPFHLASVVALTTDLPQ 290
>POLG_HCVTR (Q81487) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3022 Score = 27.7 bits (60), Expect = 7.3 Identities = 11/30 (36%), Positives = 17/30 (56%) Frame = +2 Query: 206 KNMLLRTFSWRRGSSCTGPLAVEVWPPPWL 295 K+ + R W + + C G A++VW PP L Sbjct: 843 KHWIGRLIWWNQYAICRGEAALQVWVPPLL 872
>ACM4_XENLA (P30544) Muscarinic acetylcholine receptor M4| Length = 484 Score = 27.7 bits (60), Expect = 7.3 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Frame = -3 Query: 137 VMVVVAPLMTCWTPG--MLCS*ACCHTLVPQNLWIMIVWCC 21 + ++ + WTP M+ C T +P+ +W + W C Sbjct: 407 IFAILLAFIITWTPYNVMVLINTFCQTCIPETIWYIGYWLC 447
>VANT_ENTGA (Q9X3P3) Serine/alanine racemase (EC 5.1.1.-) (EC 5.1.1.1)| (Vancomycin C-type resistance protein vanT) Length = 698 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%) Frame = -2 Query: 132 GSSGPFDDLLDTWDVVFLSL---LPHFGASEPLDYDSMVLLNRQI 7 G + D +L +D+ FL++ H G+++ L+ DSM+ +QI Sbjct: 467 GVTPTIDSILSIFDLPFLTISGVYSHLGSADRLNPDSMIRTQKQI 511
>ACM4_CHICK (P17200) Muscarinic acetylcholine receptor M4| Length = 490 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%) Frame = -3 Query: 137 VMVVVAPLMTCWTPG--MLCS*ACCHTLVPQNLWIMIVWCC 21 + ++ + WTP M+ C T VP+ +W + W C Sbjct: 413 IFAILLAFILTWTPYNVMVLINTFCETCVPETVWSIGYWLC 453 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,114,112 Number of Sequences: 219361 Number of extensions: 981317 Number of successful extensions: 2662 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 2579 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2654 length of database: 80,573,946 effective HSP length: 92 effective length of database: 60,392,734 effective search space used: 1449425616 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)