ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38f12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HAX1_MOUSE (O35387) HS1-associating protein X-1 (HAX-1) (HS1-bin... 31 0.66
2SYP41_ARATH (O65359) Syntaxin-41 (AtSYP41) (AtTLG2a) 31 0.66
3CAND_DROME (P27398) Calpain D (EC 3.4.22.-) (Calcium-activated n... 29 3.3
4NPBW2_BOVIN (Q8MJV2) Neuropeptides B/W receptor type 2 (G-protei... 28 5.6
5NPBW2_HUMAN (P48146) Neuropeptides B/W receptor type 2 (G-protei... 28 7.3
6POLG_HCVTR (Q81487) Genome polyprotein [Contains: Core protein p... 28 7.3
7ACM4_XENLA (P30544) Muscarinic acetylcholine receptor M4 28 7.3
8VANT_ENTGA (Q9X3P3) Serine/alanine racemase (EC 5.1.1.-) (EC 5.1... 28 7.3
9ACM4_CHICK (P17200) Muscarinic acetylcholine receptor M4 27 9.5

>HAX1_MOUSE (O35387) HS1-associating protein X-1 (HAX-1) (HS1-binding protein)|
          Length = 280

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 18/36 (50%), Positives = 18/36 (50%)
 Frame = -2

Query: 132 GSSGPFDDLLDTWDVVFLSLLPHFGASEPLDYDSMV 25
           GS GPF  L DTW V      PH  A E  D DS V
Sbjct: 162 GSQGPFHRLDDTWPV-----SPHSRAKEDKDLDSQV 192



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>SYP41_ARATH (O65359) Syntaxin-41 (AtSYP41) (AtTLG2a)|
          Length = 322

 Score = 31.2 bits (69), Expect = 0.66
 Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
 Frame = +2

Query: 101 SNRSSKGPLLPSLHTGTR*AHHQKLERASATSAQQKNMLLRTFSWRR-GSSCTGPLAVEV 277
           S RS + PL  S  TGTR      +   ++TS    N      S    G+S  G + V +
Sbjct: 16  SLRSVRAPLSSSSLTGTRSGGVGPVIEMASTSLLNPNRSYAPISTEDPGTSSKGAITVGL 75

Query: 278 WPPPWLDDVSDISSNFMNCAT 340
            PP W+D   +IS N     T
Sbjct: 76  -PPAWVDVSEEISVNIQRART 95



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>CAND_DROME (P27398) Calpain D (EC 3.4.22.-) (Calcium-activated neutral|
           proteinase D) (CANP D) (Small optic lobes protein)
          Length = 1594

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 54  RHQSVAASLGTQHPRCPTGHQRGHYYHHYI 143
           R Q +A SLG +       H   H++HHY+
Sbjct: 176 RGQDLAGSLGNRGELLAADHSHPHHHHHYL 205



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>NPBW2_BOVIN (Q8MJV2) Neuropeptides B/W receptor type 2 (G-protein coupled|
           receptor 8)
          Length = 336

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/53 (32%), Positives = 24/53 (45%)
 Frame = -3

Query: 188 HLRVPTFGDALI*YQYVVMVVVAPLMTCWTPGMLCS*ACCHTLVPQNLWIMIV 30
           H      G A      +V+ V+A  + CWTP  L S     T +PQ   ++IV
Sbjct: 245 HSGAKALGKAKRKVSLLVLAVLAVGLLCWTPFHLASIVALTTDLPQTPLVIIV 297



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>NPBW2_HUMAN (P48146) Neuropeptides B/W receptor type 2 (G-protein coupled|
           receptor 8)
          Length = 333

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 140 VVMVVVAPLMTCWTPGMLCS*ACCHTLVPQ 51
           +V+VV+A  + CWTP  L S     T +PQ
Sbjct: 261 LVLVVLAVCLLCWTPFHLASVVALTTDLPQ 290



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>POLG_HCVTR (Q81487) Genome polyprotein [Contains: Core protein p21 (Capsid|
           protein C) (p21); Core protein p19; Envelope
           glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2
           (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-)
           (p23); Serine protease/N
          Length = 3022

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 206 KNMLLRTFSWRRGSSCTGPLAVEVWPPPWL 295
           K+ + R   W + + C G  A++VW PP L
Sbjct: 843 KHWIGRLIWWNQYAICRGEAALQVWVPPLL 872



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>ACM4_XENLA (P30544) Muscarinic acetylcholine receptor M4|
          Length = 484

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 10/41 (24%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -3

Query: 137 VMVVVAPLMTCWTPG--MLCS*ACCHTLVPQNLWIMIVWCC 21
           +  ++   +  WTP   M+     C T +P+ +W +  W C
Sbjct: 407 IFAILLAFIITWTPYNVMVLINTFCQTCIPETIWYIGYWLC 447



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>VANT_ENTGA (Q9X3P3) Serine/alanine racemase (EC 5.1.1.-) (EC 5.1.1.1)|
           (Vancomycin C-type resistance protein vanT)
          Length = 698

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
 Frame = -2

Query: 132 GSSGPFDDLLDTWDVVFLSL---LPHFGASEPLDYDSMVLLNRQI 7
           G +   D +L  +D+ FL++     H G+++ L+ DSM+   +QI
Sbjct: 467 GVTPTIDSILSIFDLPFLTISGVYSHLGSADRLNPDSMIRTQKQI 511



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>ACM4_CHICK (P17200) Muscarinic acetylcholine receptor M4|
          Length = 490

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = -3

Query: 137 VMVVVAPLMTCWTPG--MLCS*ACCHTLVPQNLWIMIVWCC 21
           +  ++   +  WTP   M+     C T VP+ +W +  W C
Sbjct: 413 IFAILLAFILTWTPYNVMVLINTFCETCVPETVWSIGYWLC 453


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,114,112
Number of Sequences: 219361
Number of extensions: 981317
Number of successful extensions: 2662
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2579
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2654
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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