Clone Name | rbastl38f12 |
---|---|
Clone Library Name | barley_pub |
>gb|BT008960.1| Triticum aestivum clone wdk1c.pk012.i2:fis, full insert mRNA sequence Length = 2815 Score = 287 bits (145), Expect = 1e-74 Identities = 276/316 (87%), Gaps = 19/316 (6%) Strand = Plus / Minus Query: 43 caaaggttctgaggcaccaaagtgtggcagcaagcttaggaacacaacatcccaggtgtc 102 |||||||||||||||||||| ||| ||| | |||||||||||||||||||||||| ||| Sbjct: 2728 caaaggttctgaggcaccaa-gtgcagcaaccagcttaggaacacaacatcccaggagtc 2670 Query: 103 caacaggtcatcaaaggggccactactaccatcactacatactggtactagataa----g 158 ||||||| ||||| ||| |||||||||| ||| |||| ||||||||||| | Sbjct: 2669 caacaggccatcacagg--ccactactaca-----tac-tactagtactagataaccaag 2618 Query: 159 cgcatcaccaaaagttggaacgcgcaagtgcgactagc------gctcagcagaagaaca 212 |||||||||||||||||||||||||||||||| || || |||||||||||||||| Sbjct: 2617 cgcatcaccaaaagttggaacgcgcaagtgcggctggctggctggctcagcagaagaaca 2558 Query: 213 tgctgctgcggactttctcatggagacgaggcagctcctgcaccgggccgctggcagtag 272 ||||||||||||||||||||||||| ||||||||||||||||| || ||||| | | || Sbjct: 2557 tgctgctgcggactttctcatggaggcgaggcagctcctgcactggagcgctgccggcag 2498 Query: 273 aggtgtggccaccaccctggctcgacgacgtctcggacatttcatcaaactttatgaact 332 ||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| Sbjct: 2497 aggtgtggccaccgccctggctcgacgacgtctcagacatctcatcaaactttatgaact 2438 Query: 333 gcgccacctgagcagc 348 |||||||||||||||| Sbjct: 2437 gcgccacctgagcagc 2422
>gb|BT009560.1| Triticum aestivum clone wre1n.pk0001.h6:fis, full insert mRNA sequence Length = 1565 Score = 95.6 bits (48), Expect = 9e-17 Identities = 111/132 (84%) Strand = Plus / Minus Query: 199 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 258 |||||||||||||||| ||| | |||||||| || || |||||||||||| ||||||| Sbjct: 1171 tcagcagaagaacatggagctcctcactttctcgtgcagccgaggcagctccggcaccgg 1112 Query: 259 gccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatttcatc 318 | ||||| | | ||| |||||||| || ||||||||||||||||| || ||||| || || Sbjct: 1111 ggcgctgcccgcagacgtgtggccccctccctggctcgacgacgtgtccgacatgtcctc 1052 Query: 319 aaactttatgaa 330 |||||| ||||| Sbjct: 1051 aaacttcatgaa 1040
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 69.9 bits (35), Expect = 5e-09 Identities = 112/137 (81%), Gaps = 3/137 (2%) Strand = Plus / Plus Query: 197 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 256 |||||||||||||||||| ||| | |||||| | ||| || ||||||||||| ||||| Sbjct: 9630504 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 9630563 Query: 257 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatttca 316 || ||||| | | ||||| ||||||||| ||||||||||||||||| ||||| || Sbjct: 9630564 ggagcgctgcccgccgaggtatggccacca---tggctcgacgacgtctccgacatctcg 9630620 Query: 317 tcaaactttatgaactg 333 || ||||| |||||||| Sbjct: 9630621 tcgaacttgatgaactg 9630637 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 catcaccaaaagttggaacg 180 |||||||||||||||||||| Sbjct: 21143571 catcaccaaaagttggaacg 21143552
>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0038F12 Length = 190014 Score = 69.9 bits (35), Expect = 5e-09 Identities = 112/137 (81%), Gaps = 3/137 (2%) Strand = Plus / Plus Query: 197 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 256 |||||||||||||||||| ||| | |||||| | ||| || ||||||||||| ||||| Sbjct: 68507 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 68566 Query: 257 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatttca 316 || ||||| | | ||||| ||||||||| ||||||||||||||||| ||||| || Sbjct: 68567 ggagcgctgcccgccgaggtatggccacca---tggctcgacgacgtctccgacatctcg 68623 Query: 317 tcaaactttatgaactg 333 || ||||| |||||||| Sbjct: 68624 tcgaacttgatgaactg 68640
>dbj|AK121307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111L20, full insert sequence Length = 3027 Score = 69.9 bits (35), Expect = 5e-09 Identities = 112/137 (81%), Gaps = 3/137 (2%) Strand = Plus / Minus Query: 197 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 256 |||||||||||||||||| ||| | |||||| | ||| || ||||||||||| ||||| Sbjct: 2865 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 2806 Query: 257 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatttca 316 || ||||| | | ||||| ||||||||| ||||||||||||||||| ||||| || Sbjct: 2805 ggagcgctgcccgccgaggtatggccacca---tggctcgacgacgtctccgacatctcg 2749 Query: 317 tcaaactttatgaactg 333 || ||||| |||||||| Sbjct: 2748 tcgaacttgatgaactg 2732
>dbj|AK064813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E08, full insert sequence Length = 3047 Score = 69.9 bits (35), Expect = 5e-09 Identities = 112/137 (81%), Gaps = 3/137 (2%) Strand = Plus / Minus Query: 197 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 256 |||||||||||||||||| ||| | |||||| | ||| || ||||||||||| ||||| Sbjct: 2875 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 2816 Query: 257 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatttca 316 || ||||| | | ||||| ||||||||| ||||||||||||||||| ||||| || Sbjct: 2815 ggagcgctgcccgccgaggtatggccacca---tggctcgacgacgtctccgacatctcg 2759 Query: 317 tcaaactttatgaactg 333 || ||||| |||||||| Sbjct: 2758 tcgaacttgatgaactg 2742
>dbj|AK061675.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H03, full insert sequence Length = 772 Score = 69.9 bits (35), Expect = 5e-09 Identities = 112/137 (81%), Gaps = 3/137 (2%) Strand = Plus / Minus Query: 197 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 256 |||||||||||||||||| ||| | |||||| | ||| || ||||||||||| ||||| Sbjct: 574 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 515 Query: 257 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatttca 316 || ||||| | | ||||| ||||||||| ||||||||||||||||| ||||| || Sbjct: 514 ggagcgctgcccgccgaggtatggccacca---tggctcgacgacgtctccgacatctcg 458 Query: 317 tcaaactttatgaactg 333 || ||||| |||||||| Sbjct: 457 tcgaacttgatgaactg 441
>ref|NM_188086.1| Oryza sativa (japonica cultivar-group), Ozsa8518 predicted mRNA Length = 2715 Score = 65.9 bits (33), Expect = 8e-08 Identities = 110/135 (81%), Gaps = 3/135 (2%) Strand = Plus / Minus Query: 199 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 258 |||||||||||||||| ||| | |||||| | ||| || ||||||||||| ||||||| Sbjct: 2715 tcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcaccgg 2656 Query: 259 gccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatttcatc 318 ||||| | | ||||| ||||||||| ||||||||||||||||| ||||| || || Sbjct: 2655 agcgctgcccgccgaggtatggccacca---tggctcgacgacgtctccgacatctcgtc 2599 Query: 319 aaactttatgaactg 333 ||||| |||||||| Sbjct: 2598 gaacttgatgaactg 2584
>gb|AY111526.1| Zea mays CL881_3 mRNA sequence Length = 628 Score = 58.0 bits (29), Expect = 2e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 197 gctcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 256 |||||||||||||||||| ||| | ||||||||||| ||||| ||||||||||| || Sbjct: 341 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 282 Query: 257 gggccgctg 265 ||| ||||| Sbjct: 281 gggacgctg 273
>gb|AY109357.1| Zea mays CL881_1 mRNA sequence Length = 3158 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Minus Query: 299 gacgtctcggacatttcatcaaactttatgaactgcgccacctgagcagctgc 351 |||||||| ||||| ||||| |||||||||||||| | |||||||||||||| Sbjct: 2743 gacgtctccgacatctcatcgaactttatgaactggccaacctgagcagctgc 2691
>emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A11, complete sequence Length = 127419 Score = 48.1 bits (24), Expect = 0.019 Identities = 51/60 (85%) Strand = Plus / Plus Query: 199 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 258 ||||||||| |||||| ||| | |||||||||||||| ||||||||||| ||||||| Sbjct: 121776 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 121835
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.019 Identities = 51/60 (85%) Strand = Plus / Plus Query: 199 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 258 ||||||||| |||||| ||| | |||||||||||||| ||||||||||| ||||||| Sbjct: 3532481 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 3532540
>dbj|AK122078.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119H08, full insert sequence Length = 3385 Score = 48.1 bits (24), Expect = 0.019 Identities = 51/60 (85%) Strand = Plus / Minus Query: 199 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 258 ||||||||| |||||| ||| | |||||||||||||| ||||||||||| ||||||| Sbjct: 3037 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 2978
>dbj|AK119248.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-C06, full insert sequence Length = 1885 Score = 48.1 bits (24), Expect = 0.019 Identities = 51/60 (85%) Strand = Plus / Minus Query: 199 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 258 ||||||||| |||||| ||| | |||||||||||||| ||||||||||| ||||||| Sbjct: 1585 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 1526
>dbj|AK104539.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H02, full insert sequence Length = 1196 Score = 48.1 bits (24), Expect = 0.019 Identities = 51/60 (85%) Strand = Plus / Minus Query: 199 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 258 ||||||||| |||||| ||| | |||||||||||||| ||||||||||| ||||||| Sbjct: 896 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 837
>dbj|AK065274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L10, full insert sequence Length = 3178 Score = 48.1 bits (24), Expect = 0.019 Identities = 51/60 (85%) Strand = Plus / Minus Query: 199 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 258 ||||||||| |||||| ||| | |||||||||||||| ||||||||||| ||||||| Sbjct: 2855 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 2796
>dbj|AK060907.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F07, full insert sequence Length = 1196 Score = 48.1 bits (24), Expect = 0.019 Identities = 51/60 (85%) Strand = Plus / Minus Query: 199 tcagcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 258 ||||||||| |||||| ||| | |||||||||||||| ||||||||||| ||||||| Sbjct: 896 tcagcagaaaaacatggagctcctcactttctcatggaggcgaggcagctcaggcaccgg 837
>gb|BT018108.1| Zea mays clone EL01N0553E01.c mRNA sequence Length = 1267 Score = 46.1 bits (23), Expect = 0.076 Identities = 47/55 (85%) Strand = Plus / Minus Query: 201 agcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcac 255 |||||||||||||| ||| | |||||| ||||| || |||||||||||| |||| Sbjct: 1075 agcagaagaacatggagctcctgactttgtcatgcaggcgaggcagctccggcac 1021
>gb|AY104211.1| Zea mays PCO124720 mRNA sequence Length = 2052 Score = 46.1 bits (23), Expect = 0.076 Identities = 47/55 (85%) Strand = Plus / Minus Query: 201 agcagaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcac 255 |||||||||||||| ||| | |||||| ||||| || |||||||||||| |||| Sbjct: 1866 agcagaagaacatggagctcctgactttgtcatgcaggcgaggcagctccggcac 1812
>emb|AL928586.10| Mouse DNA sequence from clone RP23-353H5 on chromosome 2, complete sequence Length = 105895 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 197 gctcagcagaagaacatgctgctgc 221 |||||||||||||||||||| |||| Sbjct: 94463 gctcagcagaagaacatgctcctgc 94487
>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1144D11 Length = 157943 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 catcaccaaaagttggaacg 180 |||||||||||||||||||| Sbjct: 111116 catcaccaaaagttggaacg 111097
>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1064G04 Length = 186704 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 161 catcaccaaaagttggaacg 180 |||||||||||||||||||| Sbjct: 41080 catcaccaaaagttggaacg 41061
>gb|AC105109.10| Homo sapiens chromosome 15, clone CTD-2343P13, complete sequence Length = 76158 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 ctcagcagaagaacatgctgctgc 221 |||| ||||||||||||||||||| Sbjct: 35520 ctcaccagaagaacatgctgctgc 35543
>gb|AC104020.10| Homo sapiens chromosome 15, clone RP11-369K8, complete sequence Length = 171307 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 198 ctcagcagaagaacatgctgctgc 221 |||| ||||||||||||||||||| Sbjct: 162327 ctcaccagaagaacatgctgctgc 162350
>emb|BX511094.6| Zebrafish DNA sequence from clone CH211-137G12 in linkage group 19, complete sequence Length = 154360 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 gctcagcagaagaacatgct 216 |||||||||||||||||||| Sbjct: 97639 gctcagcagaagaacatgct 97620
>gb|AC137555.4| Mus musculus BAC clone RP23-445B17 from 1, complete sequence Length = 174607 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 312 tttcatcaaactttatgaac 331 |||||||||||||||||||| Sbjct: 112756 tttcatcaaactttatgaac 112775 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,649,725 Number of Sequences: 3902068 Number of extensions: 2649725 Number of successful extensions: 45180 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45091 Number of HSP's gapped (non-prelim): 82 length of query: 352 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 330 effective length of database: 17,147,199,772 effective search space: 5658575924760 effective search space used: 5658575924760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)