ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38f10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ234614.1|HVU234614 Hordeum vulgare genomic DNA fragment; c... 595 e-167
2emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4,... 92 1e-15
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 92 1e-15
4emb|AJ427980.1|OSA427980 Oryza sativa HAK11 gene for putative po... 92 1e-15
5dbj|AK072123.1| Oryza sativa (japonica cultivar-group) cDNA clon... 92 1e-15
6ref|XM_473875.1| Oryza sativa (japonica cultivar-group), predic... 90 6e-15
7gb|AY108668.1| Zea mays PCO064352 mRNA sequence 70 5e-09
8dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
9dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic D... 64 3e-07
10emb|AJ427981.1|OSA427981 Oryza sativa HAK12 gene for putative po... 64 3e-07
11dbj|AK069377.1| Oryza sativa (japonica cultivar-group) cDNA clon... 64 3e-07
12dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
13dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
14dbj|AK065464.1| Oryza sativa (japonica cultivar-group) cDNA clon... 62 1e-06
15gb|AC116587.4| Mus musculus BAC clone RP23-409C18 from 12, compl... 40 4.7
16gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, co... 40 4.7
17emb|CR394564.8| Zebrafish DNA sequence from clone DKEY-1K1 in li... 40 4.7
18gb|AC104185.2| Homo sapiens chromosome 3 clone RP11-268J19, comp... 40 4.7
19gb|AC159652.6| Mus musculus 10 BAC RP24-123H21 (Roswell Park Can... 40 4.7
20gb|AC158339.1| Homo sapiens chromosome 8 clone WI2-3382N4, compl... 40 4.7
21dbj|AK047433.1| Mus musculus 10 days neonate cerebellum cDNA, RI... 40 4.7
22gb|AC019144.9| Homo sapiens BAC clone RP11-733L22 from 2, comple... 40 4.7
23gb|AC084669.1|CBRG47F11 Caenorhabditis briggsae cosmid G47F11, c... 40 4.7
24gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Canc... 40 4.7
25gb|AC155269.2| Mus musculus BAC clone RP23-215E17 from 12, compl... 40 4.7
26gb|AC154416.2| Mus musculus BAC clone RP24-232F23 from 17, compl... 40 4.7
27gb|AC153931.2| Mus musculus 10 BAC RP24-147A18 (Roswell Park Can... 40 4.7
28gb|AC115894.6| Mus musculus chromosome 18, clone RP24-443A14, co... 40 4.7 
>emb|AJ234614.1|HVU234614 Hordeum vulgare genomic DNA fragment; clone MWG0882.uni
          Length = 351

 Score =  595 bits (300), Expect = e-167
 Identities = 335/344 (97%), Gaps = 2/344 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctaggcaactatcgcaatatatgatctctcatggaaagaaagcatctgaatcttacatg 60
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 342 cctaggcaactatcgcaatatatgatccctcatggaaagaaagcatctgaatcttacatg 283

                                                                       
Query: 61  ttacaacacaaaacatgaacgtttctagcatgaacactgcctgaaagatgcagagggcaa 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 282 ttacaacacaaaacatga-cgtttctagcatgaacactgcctgaaagatgcagagtgcaa 224

                                                                       
Query: 121 aacaaaatctgaagctattccctatttatattctacgactgataagtttcctatatacat 180
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 223 aacaaaatctgaagctat-ccctatttatattctacgactgataagtttcctatatacat 165

                                                                       
Query: 181 tttaaagcagccagccccttttttccctccagagaacggcacatcaaagctttttgctca 240
           ||||||||||||||||||| | |||||||||||||| ||||||||| |||||||||||||
Sbjct: 164 tttaaagcagccagcccctctcttccctccagagaatggcacatcagagctttttgctca 105

                                                                       
Query: 241 aaacccaatacaaactaacatcggaaacgatgtttcagatgtagtatatttgcccaacat 300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 gaacccaatacaaactaacatcggaaacgatgtttcagatgtagtatatttgcccaacat 45

                                                       
Query: 301 taagtaggctctcatgaggaatattgaacatcacactgttctcc 344
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44  taagtaggctctcatgaggaatattgaacatcacactgttctcc 1
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>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
              complete sequence
          Length = 160484

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 73/82 (89%)
 Strand = Plus / Plus

                                                                          
Query: 272    gtttcagatgtagtatatttgcccaacattaagtaggctctcatgaggaatattgaacat 331
              |||||| || || |||||||| ||||||||||| | ||||||||| |||| |||||| ||
Sbjct: 144518 gtttcatatataatatatttggccaacattaagcaagctctcatggggaacattgaagat 144577

                                    
Query: 332    cacactgttctccctgcagatc 353
              ||||||||||||||||||||||
Sbjct: 144578 cacactgttctccctgcagatc 144599
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 73/82 (89%)
 Strand = Plus / Plus

                                                                            
Query: 272      gtttcagatgtagtatatttgcccaacattaagtaggctctcatgaggaatattgaacat 331
                |||||| || || |||||||| ||||||||||| | ||||||||| |||| |||||| ||
Sbjct: 31162437 gtttcatatataatatatttggccaacattaagcaagctctcatggggaacattgaagat 31162496

                                      
Query: 332      cacactgttctccctgcagatc 353
                ||||||||||||||||||||||
Sbjct: 31162497 cacactgttctccctgcagatc 31162518
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>emb|AJ427980.1|OSA427980 Oryza sativa HAK11 gene for putative potasium transporter, exons 1-9
          Length = 4562

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                        
Query: 272  gtttcagatgtagtatatttgcccaacattaagtaggctctcatgaggaatattgaacat 331
            |||||| || || |||||||| ||||||||||| | ||||||||| |||| |||||| ||
Sbjct: 4076 gtttcatatataatatatttggccaacattaagcaagctctcatggggaacattgaagat 4017

                                  
Query: 332  cacactgttctccctgcagatc 353
            ||||||||||||||||||||||
Sbjct: 4016 cacactgttctccctgcagatc 3995
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>dbj|AK072123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122K08, full
            insert sequence
          Length = 3453

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                        
Query: 272  gtttcagatgtagtatatttgcccaacattaagtaggctctcatgaggaatattgaacat 331
            |||||| || || |||||||| ||||||||||| | ||||||||| |||| |||||| ||
Sbjct: 3247 gtttcatatataatatatttggccaacattaagcaagctctcatggggaacattgaagat 3188

                                  
Query: 332  cacactgttctccctgcagatc 353
            ||||||||||||||||||||||
Sbjct: 3187 cacactgttctccctgcagatc 3166
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>ref|XM_473875.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2217

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 63/69 (91%)
 Strand = Plus / Minus

                                                                        
Query: 285  tatatttgcccaacattaagtaggctctcatgaggaatattgaacatcacactgttctcc 344
            |||||||| ||||||||||| | ||||||||| |||| |||||| |||||||||||||||
Sbjct: 2207 tatatttggccaacattaagcaagctctcatggggaacattgaagatcacactgttctcc 2148

                     
Query: 345  ctgcagatc 353
            |||||||||
Sbjct: 2147 ctgcagatc 2139
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>gb|AY108668.1| Zea mays PCO064352 mRNA sequence
          Length = 1690

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 56/63 (88%)
 Strand = Plus / Minus

                                                                        
Query: 291  tgcccaacattaagtaggctctcatgaggaatattgaacatcacactgttctccctgcag 350
            ||||||||||| |||||||||||||| |||| |||||| ||  | |||||||||||||||
Sbjct: 1494 tgcccaacattcagtaggctctcatggggaacattgaagatggcgctgttctccctgcag 1435

               
Query: 351  atc 353
            |||
Sbjct: 1434 atc 1432
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                           
Query: 282     tagtatatttgcccaacattaagtaggctctcatgaggaatattgaacatcacactgttc 341
               |||||||| || || ||||| || || || ||||| |||| |||||| ||||||||||||
Sbjct: 6204820 tagtatatctggcctacattgagaagactttcatggggaacattgaatatcacactgttc 6204761

                           
Query: 342     tccctgcagatc 353
               ||||||||||||
Sbjct: 6204760 tccctgcagatc 6204749
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>dbj|AP003875.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1119_C05
          Length = 126112

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                         
Query: 282   tagtatatttgcccaacattaagtaggctctcatgaggaatattgaacatcacactgttc 341
             |||||||| || || ||||| || || || ||||| |||| |||||| ||||||||||||
Sbjct: 68213 tagtatatctggcctacattgagaagactttcatggggaacattgaatatcacactgttc 68154

                         
Query: 342   tccctgcagatc 353
             ||||||||||||
Sbjct: 68153 tccctgcagatc 68142
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>emb|AJ427981.1|OSA427981 Oryza sativa HAK12 gene for putative potasium transporter, exons 1-9
          Length = 5418

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                        
Query: 282  tagtatatttgcccaacattaagtaggctctcatgaggaatattgaacatcacactgttc 341
            |||||||| || || ||||| || || || ||||| |||| |||||| ||||||||||||
Sbjct: 4915 tagtatatctggcctacattgagaagactttcatggggaacattgaatatcacactgttc 4856

                        
Query: 342  tccctgcagatc 353
            ||||||||||||
Sbjct: 4855 tccctgcagatc 4844
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>dbj|AK069377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012J20, full
            insert sequence
          Length = 3200

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                        
Query: 282  tagtatatttgcccaacattaagtaggctctcatgaggaatattgaacatcacactgttc 341
            |||||||| || || ||||| || || || ||||| |||| |||||| ||||||||||||
Sbjct: 2945 tagtatatctggcctacattgagaagactttcatggggaacattgaatatcacactgttc 2886

                        
Query: 342  tccctgcagatc 353
            ||||||||||||
Sbjct: 2885 tccctgcagatc 2874
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                            
Query: 291      tgcccaacattaagtaggctctcatgaggaatattgaacatcacactgttctccctgcag 350
                ||||||||||| || | |||||||||||| | |||||| ||  |||||||||||||||||
Sbjct: 22066566 tgcccaacattgagcatgctctcatgaggcacattgaagatggcactgttctccctgcag 22066625

                   
Query: 351      atc 353
                |||
Sbjct: 22066626 atc 22066628
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>dbj|AP005396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0635G10
          Length = 146728

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                          
Query: 291    tgcccaacattaagtaggctctcatgaggaatattgaacatcacactgttctccctgcag 350
              ||||||||||| || | |||||||||||| | |||||| ||  |||||||||||||||||
Sbjct: 108630 tgcccaacattgagcatgctctcatgaggcacattgaagatggcactgttctccctgcag 108689

                 
Query: 351    atc 353
              |||
Sbjct: 108690 atc 108692
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>dbj|AK065464.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013020H24, full
            insert sequence
          Length = 2893

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                        
Query: 291  tgcccaacattaagtaggctctcatgaggaatattgaacatcacactgttctccctgcag 350
            ||||||||||| || | |||||||||||| | |||||| ||  |||||||||||||||||
Sbjct: 2811 tgcccaacattgagcatgctctcatgaggcacattgaagatggcactgttctccctgcag 2752

               
Query: 351  atc 353
            |||
Sbjct: 2751 atc 2749
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>gb|AC116587.4| Mus musculus BAC clone RP23-409C18 from 12, complete sequence
          Length = 202651

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 209    ccagagaacggcacatcaaagctt 232
              ||||||||| ||||||||||||||
Sbjct: 190825 ccagagaacagcacatcaaagctt 190802
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>gb|AC100751.6| Mus musculus chromosome 18, clone RP23-249P18, complete sequence
          Length = 253910

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    ccttttttccctccagagaa 216
              ||||||||||||||||||||
Sbjct: 195776 ccttttttccctccagagaa 195757
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>emb|CR394564.8| Zebrafish DNA sequence from clone DKEY-1K1 in linkage group 8, complete
             sequence
          Length = 227475

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   tacattttaaagcagccagc 195
             ||||||||||||||||||||
Sbjct: 81136 tacattttaaagcagccagc 81117
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>gb|AC104185.2| Homo sapiens chromosome 3 clone RP11-268J19, complete sequence
          Length = 165918

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 315   tgaggaatattgaacatcacactg 338
             |||| |||||||||||||||||||
Sbjct: 14860 tgagtaatattgaacatcacactg 14883
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>gb|AC159652.6| Mus musculus 10 BAC RP24-123H21 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 202827

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 328   acatcacactgttctccctgcagatcct 355
             ||||| |||||| |||||||||||||||
Sbjct: 52598 acatctcactgtactccctgcagatcct 52571
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>gb|AC158339.1| Homo sapiens chromosome 8 clone WI2-3382N4, complete sequence
          Length = 42713

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 191   ccagccccttttttccctcc 210
             ||||||||||||||||||||
Sbjct: 35285 ccagccccttttttccctcc 35304
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>dbj|AK047433.1| Mus musculus 10 days neonate cerebellum cDNA, RIKEN full-length
           enriched library, clone:B930062B16
           product:unclassifiable, full insert sequence
          Length = 1736

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 197 ccttttttccctccagagaa 216
           ||||||||||||||||||||
Sbjct: 58  ccttttttccctccagagaa 77
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>gb|AC019144.9| Homo sapiens BAC clone RP11-733L22 from 2, complete sequence
          Length = 146004

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 323   attgaacatcacactgttct 342
             ||||||||||||||||||||
Sbjct: 83360 attgaacatcacactgttct 83341
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>gb|AC084669.1|CBRG47F11 Caenorhabditis briggsae cosmid G47F11, complete sequence
          Length = 43291

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    tggaaagaaagcatctgaat 52
             ||||||||||||||||||||
Sbjct: 28982 tggaaagaaagcatctgaat 29001
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>gb|AC016970.16| Homo sapiens 3 BAC RP11-40M23 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 166966

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 167    tttcctatatacattttaaa 186
              ||||||||||||||||||||
Sbjct: 161198 tttcctatatacattttaaa 161217
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>gb|AC155269.2| Mus musculus BAC clone RP23-215E17 from 12, complete sequence
          Length = 198927

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 209   ccagagaacggcacatcaaagctt 232
             ||||||||| ||||||||||||||
Sbjct: 59319 ccagagaacagcacatcaaagctt 59342
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>gb|AC154416.2| Mus musculus BAC clone RP24-232F23 from 17, complete sequence
          Length = 167542

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 309   ctctcatgaggaatattgaa 328
             ||||||||||||||||||||
Sbjct: 65192 ctctcatgaggaatattgaa 65211
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>gb|AC153931.2| Mus musculus 10 BAC RP24-147A18 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 172260

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 328    acatcacactgttctccctgcagatcct 355
              ||||| |||||| |||||||||||||||
Sbjct: 151629 acatctcactgtactccctgcagatcct 151602
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>gb|AC115894.6| Mus musculus chromosome 18, clone RP24-443A14, complete sequence
          Length = 185242

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   ccttttttccctccagagaa 216
             ||||||||||||||||||||
Sbjct: 57892 ccttttttccctccagagaa 57873


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,233,272
Number of Sequences: 3902068
Number of extensions: 4233272
Number of successful extensions: 79859
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 79749
Number of HSP's gapped (non-prelim): 108
length of query: 356
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 334
effective length of database: 17,147,199,772
effective search space: 5727164723848
effective search space used: 5727164723848
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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