ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38f09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RDGC_PASMU (P57810) Recombination-associated protein rdgC 31 1.8
2TGL_BACHD (Q9K5W7) Protein-glutamine gamma-glutamyltransferase (... 31 1.8
3DRS1_ASHGO (Q75F95) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-) 30 3.9

>RDGC_PASMU (P57810) Recombination-associated protein rdgC|
          Length = 302

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 168 PVATGNSPNVIVTMMLHGDCTPCWALTLSEGNV 266
           P++  N P+VI+T  ++ D TP W + L E  +
Sbjct: 164 PLSFANEPSVIMTDWINKDQTPAWLMPLEEAEL 196



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>TGL_BACHD (Q9K5W7) Protein-glutamine gamma-glutamyltransferase (EC 2.3.2.13)|
           (Transglutaminase) (TGase)
          Length = 284

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = +3

Query: 111 YSHFNFTKFEINKRGTTTSPVATGNSPNVIVTMMLHGDCTP-CWALTLSEG 260
           YS  N  +FE+N R          N+  V  T+  H  C P  W LT + G
Sbjct: 41  YSSMNELRFELNVRINIMESAKEMNASQVTFTIFEHASCNPEYWTLTSTGG 91



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>DRS1_ASHGO (Q75F95) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)|
          Length = 734

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +1

Query: 277 ENRNRRRIVHITTPELQLSCPVLNGTVRTNVHLPSSLQG 393
           E    + +VH T   L LS PVL G        PS +QG
Sbjct: 209 EGEEAKNVVHSTFNSLSLSRPVLKGLAALGYTKPSPIQG 247


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,587,895
Number of Sequences: 219361
Number of extensions: 1464264
Number of successful extensions: 3930
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3929
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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