ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl38f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SOPB_SALDZ (Q9AH19) Inositol phosphate phosphatase sopB (EC 3.1.... 30 2.7
2FXL19_MOUSE (Q6PB97) F-box/LRR-repeat protein 19 (F-box and leuc... 30 2.7
3Y1330_DEIRA (Q9RUQ2) Hypothetical protein DR1330 29 7.7

>SOPB_SALDZ (Q9AH19) Inositol phosphate phosphatase sopB (EC 3.1.3.-) (Effector|
           protein sopB) (Fragment)
          Length = 416

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = +1

Query: 214 GRRSACLSLGLGLATAAVFHTTPARATVDGDEEPEPANNGW---WLTEFP 354
           G     L LG GL T+  ++       +  D  PE    GW   WL ++P
Sbjct: 215 GVNELALKLGFGLKTSDSYNVEALHQLLGNDLRPEAKPGGWVGDWLAQYP 264



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>FXL19_MOUSE (Q6PB97) F-box/LRR-repeat protein 19 (F-box and leucine-rich repeat|
           protein 19)
          Length = 674

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +1

Query: 280 PARATVDGDEEPEPANNGWWLTEFPLPVPKIRNSTATLP 396
           P R   D  EE      GW LTE P P P +      LP
Sbjct: 142 PGRRRADNGEEGANLGGGWKLTEEPPPPPPLPRRKGPLP 180



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>Y1330_DEIRA (Q9RUQ2) Hypothetical protein DR1330|
          Length = 308

 Score = 28.9 bits (63), Expect = 7.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 387 GGTVADLGHRQGELGEPPAVIGRLRLLVAVNGGAGGCRV 271
           G  +A  G  +GE  E   + GR+ L + ++ G G CRV
Sbjct: 93  GRVLAQAGRWRGEALELETLAGRIPLRLVLDAGGGECRV 131


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,552,101
Number of Sequences: 219361
Number of extensions: 1081350
Number of successful extensions: 2675
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2675
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3420806017
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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