ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl38f06 |
|---|---|
| Clone Library Name | barley_pub |
>TBCD_MOUSE (Q8BYA0) Tubulin-specific chaperone D (Tubulin-folding cofactor D)| (Beta-tubulin cofactor D) Length = 1196 Score = 58.2 bits (139), Expect = 8e-09 Identities = 27/72 (37%), Positives = 43/72 (59%) Frame = -1 Query: 414 KAFSQLLVFLGHRYPKIRKAAADQVYLVLLQNDSLISAEDMDKAQEVLAETCWEGDVEEA 235 K QL + LGH +P IRK+ A QVY ++L L+ AE +D+ VL++T W+ ++ Sbjct: 1111 KILLQLFLLLGHPFPVIRKSTASQVYEMVLTYSDLVDAEVLDEVMSVLSDTAWDAELPVV 1170 Query: 234 RHKRSELNVMAG 199 R +R+ L + G Sbjct: 1171 REQRNRLCDLLG 1182
>TBCD_HUMAN (Q9BTW9) Tubulin-specific chaperone D (Tubulin-folding cofactor D)| (Beta-tubulin cofactor D) (tfcD) (SSD-1) Length = 1192 Score = 54.3 bits (129), Expect = 1e-07 Identities = 26/72 (36%), Positives = 42/72 (58%) Frame = -1 Query: 414 KAFSQLLVFLGHRYPKIRKAAADQVYLVLLQNDSLISAEDMDKAQEVLAETCWEGDVEEA 235 +A QL + L HR+P IRK A QVY LL ++ A+ +D+ VL++T W+ ++ Sbjct: 1108 QALLQLCLLLCHRFPLIRKTTASQVYETLLTYSDVVGADVLDEVVTVLSDTAWDAELAVV 1167 Query: 234 RHKRSELNVMAG 199 R +R+ L + G Sbjct: 1168 REQRNRLCDLLG 1179
>TBCD_BOVIN (Q28205) Tubulin-specific chaperone D (Tubulin-folding cofactor D)| (Beta-tubulin cofactor D) Length = 1199 Score = 44.3 bits (103), Expect = 1e-04 Identities = 24/72 (33%), Positives = 39/72 (54%) Frame = -1 Query: 414 KAFSQLLVFLGHRYPKIRKAAADQVYLVLLQNDSLISAEDMDKAQEVLAETCWEGDVEEA 235 K QL + L H +P IRK A QVY ++L D ++ +D+ VL+ T W+ ++ Sbjct: 1116 KVLLQLFLLLCHPFPVIRKNTASQVYEMVLTYD-VVPTAVLDEVMAVLSSTAWDAELPVV 1174 Query: 234 RHKRSELNVMAG 199 R +R+ L + G Sbjct: 1175 RAQRNRLCDLLG 1186
>SEC2_YEAST (P17065) Rab guanine nucleotide exchange factor SEC2 (GDP-GTP| exchange factor SEC2) Length = 759 Score = 33.5 bits (75), Expect = 0.22 Identities = 17/47 (36%), Positives = 26/47 (55%) Frame = -1 Query: 309 ISAEDMDKAQEVLAETCWEGDVEEARHKRSELNVMAGFGVAASDKSE 169 I+ ED++K EV T +G V K L+ MAG G+ +S K++ Sbjct: 408 ITKEDLEKFSEVTKHTKRDGRVSSQDKKTKRLSFMAGLGINSSTKNK 454
>FANCG_HUMAN (O15287) Fanconi anemia group G protein (Protein FACG) (DNA-repair| protein XRCC9) Length = 622 Score = 31.6 bits (70), Expect = 0.83 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Frame = +3 Query: 51 GRTTAPLLSIH*IQPARNTTCSRQSKQHFEHRELLLPVDSQTCPRR-RRQNQPSHSVPTS 227 G TTA L S+ + A N CS ++ Q ELLLP P Q+Q H + + Sbjct: 294 GDTTAELESLELLVEALNVPCSSKAPQFLIEVELLLPPPDLASPLHCGTQSQTKHILASR 353 Query: 228 C 230 C Sbjct: 354 C 354
>IF2B_RABIT (P41035) Eukaryotic translation initiation factor 2 subunit 2| (Eukaryotic translation initiation factor 2 beta subunit) (eIF-2-beta) Length = 333 Score = 31.2 bits (69), Expect = 1.1 Identities = 22/89 (24%), Positives = 44/89 (49%), Gaps = 5/89 (5%) Frame = -1 Query: 297 DMDKAQEVLAETCWEGDVEEARHKRSELNVMAGFGVAASDKSENRQGARAPD-----VRN 133 D+D+A+E + + E DV+E +L++M G +K + ++ + PD ++ Sbjct: 90 DIDEAEEGVKDLKIENDVQEPAEPEDDLDIMLG------NKKKKKKNVKFPDEDEILEKD 143 Query: 132 AASTDENTSYSSLVEFSGY*AGGPSFSPS 46 A DE++ + FS GP+++ S Sbjct: 144 EALEDEDSKKDDGISFSN--QTGPAWAGS 170
>UBP8_MOUSE (Q80U87) Ubiquitin carboxyl-terminal hydrolase 8 (EC 3.1.2.15)| (Ubiquitin thioesterase 8) (Ubiquitin-specific-processing protease 8) (Deubiquitinating enzyme 8) (mUBPy) Length = 1080 Score = 30.8 bits (68), Expect = 1.4 Identities = 14/41 (34%), Positives = 20/41 (48%) Frame = +3 Query: 105 TTCSRQSKQHFEHRELLLPVDSQTCPRRRRQNQPSHSVPTS 227 T RQSK E + +PV+ + CP Q +P+ P S Sbjct: 543 TGTQRQSKSEHEASDAKVPVEGKRCPTSEAQKRPADVSPAS 583
>IF2B_HUMAN (P20042) Eukaryotic translation initiation factor 2 subunit 2| (Eukaryotic translation initiation factor 2 beta subunit) (eIF-2-beta) Length = 333 Score = 30.8 bits (68), Expect = 1.4 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Frame = -1 Query: 297 DMDKAQEVLAETCWEGDVEEARHKRSELNVMAGFGVAASDKSENRQGARAPD-----VRN 133 D+D+A+E + + E DV+E +L++M G +K + ++ + PD ++ Sbjct: 90 DIDEAEEGVKDLKIESDVQEPTEPEDDLDIMLG------NKKKKKKNVKFPDEDEILEKD 143 Query: 132 AASTDENTSYSSLVEFSGY*AGGPSFSPS 46 A DE+ + FS GP+++ S Sbjct: 144 EALEDEDNKKDDGISFSN--QTGPAWAGS 170
>CP7A1_CRIGR (P46634) Cytochrome P450 7A1 (EC 1.14.13.17) (Cholesterol| 7-alpha-monooxygenase) (CYPVII) (Cholesterol 7-alpha-hydroxylase) Length = 504 Score = 30.0 bits (66), Expect = 2.4 Identities = 17/49 (34%), Positives = 27/49 (55%) Frame = -1 Query: 414 KAFSQLLVFLGHRYPKIRKAAADQVYLVLLQNDSLISAEDMDKAQEVLA 268 KA QL L H +R ++ + L + ND+L + +DM+KA+ LA Sbjct: 233 KAREQLAEGLKHENLSVRDQVSELIRLRMFLNDTLSTFDDMEKAKTHLA 281
>CP7A1_RAT (P18125) Cytochrome P450 7A1 (EC 1.14.13.17) (Cholesterol| 7-alpha-monooxygenase) (CYPVII) (Cholesterol 7-alpha-hydroxylase) Length = 503 Score = 29.3 bits (64), Expect = 4.1 Identities = 17/52 (32%), Positives = 29/52 (55%) Frame = -1 Query: 423 TGTKAFSQLLVFLGHRYPKIRKAAADQVYLVLLQNDSLISAEDMDKAQEVLA 268 T KA +L L H+ +R ++ + L + ND+L + +DM+KA+ LA Sbjct: 230 TAHKAREKLAEGLKHKNLCVRDQVSELIRLRMFLNDTLSTFDDMEKAKTHLA 281
>PKSL_BACSU (Q05470) Putative polyketide synthase pksL (PKS)| Length = 4538 Score = 28.9 bits (63), Expect = 5.4 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 12/47 (25%) Frame = -1 Query: 303 AEDMDKAQEVLAETCWEGDVEEA------------RHKRSELNVMAG 199 AE MD + + ETCWE +E+A R+KR + V AG Sbjct: 514 AETMDPQERLFLETCWE-TIEDAGYTPKTLAKPKGRNKRQHVGVFAG 559
>RDRP_PEAMV (P29154) RNA-directed RNA polymerase (EC 2.7.7.48)| Length = 599 Score = 28.9 bits (63), Expect = 5.4 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%) Frame = -1 Query: 246 VEEARHKRSELNVMAGFGVAAS-DKSENRQGARAPDVRNAASTDEN 112 V+ K SE + G GV+++ +S++R+G P RN A T+E+ Sbjct: 13 VDSGETKSSEDPLPKGRGVSSTPSRSKSRKGKACPSFRNDAGTEES 58
>ARBB_ERWCH (P26206) 6-phospho-beta-glucosidase (EC 3.2.1.86)| Length = 465 Score = 28.5 bits (62), Expect = 7.1 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = -1 Query: 339 YLVLLQNDSLISA-EDMDKAQEVLAETCWEGDVEEARHKRSELNVMAGF 196 Y + ND L+ E +D EVL TCW G ++ ++E++ GF Sbjct: 381 YRIRYLNDHLVQVGEAIDDGVEVLGYTCW-GPIDLVSASKAEMSKRYGF 428
>RIMS1_HUMAN (Q86UR5) Regulating synaptic membrane exocytosis protein 1| (Rab3-interacting molecule 1) (RIM 1) Length = 1692 Score = 28.1 bits (61), Expect = 9.2 Identities = 16/50 (32%), Positives = 23/50 (46%) Frame = -1 Query: 246 VEEARHKRSELNVMAGFGVAASDKSENRQGARAPDVRNAASTDENTSYSS 97 V ARH+R +V A + E + G RAP A+ D +YS+ Sbjct: 381 VSRARHERRHSDVALPRTEAGAALPEGKAGKRAPAAARASPPDSPRAYSA 430
>BUD3_YEAST (P25558) Bud site selection protein BUD3| Length = 1636 Score = 28.1 bits (61), Expect = 9.2 Identities = 18/44 (40%), Positives = 24/44 (54%) Frame = -1 Query: 189 AASDKSENRQGARAPDVRNAASTDENTSYSSLVEFSGY*AGGPS 58 A KS++ G + PDV N A ENT SS+V + Y + PS Sbjct: 928 AVEFKSDDLIG-KPPDVGNGAHPQENTRISSVVRDTKYVSYNPS 970 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 63,433,548 Number of Sequences: 219361 Number of extensions: 1218417 Number of successful extensions: 3817 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3599 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3816 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
